Dbfetch
ID GU112073; SV 1; circular; genomic DNA; STD; VRL; 2789 BP. XX AC GU112073; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Bhendi yellow vein mosaic virus [India:Pandarahalli:OY173:2006] segment DE DNA-A, complete sequence. XX KW . XX OS Bhendi yellow vein mosaic virus [India:Pandarahalli:OY173:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2789 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2789 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2789 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (01-OCT-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; e287c6210341adebe8e61965216b4f9b. DR EuropePMC; PMC3824786; 28324417. XX FH Key Location/Qualifiers FH FT source 1..2789 FT /organism="Bhendi yellow vein mosaic virus FT [India:Pandarahalli:OY173:2006]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus (okra)" FT /isolate="OY174" FT /mol_type="genomic DNA" FT /country="India:Pandarahalli, Tamil Nadu" FT /isolation_source="leaf" FT /collected_by="V.Venkataravanappa" FT /collection_date="2006" FT /db_xref="taxon:908101" FT gene 167..532 FT /gene="AV2" FT CDS 167..532 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BPW5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BPW5" FT /protein_id="ADO40989.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 327..1097 FT /gene="AV1" FT CDS 327..1097 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BPW6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7BPW6" FT /protein_id="ADO40990.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT SMATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(675..1031) FT /gene="AC5" FT CDS complement(675..1031) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:E7BPW7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:E7BPW7" FT /protein_id="ADO40991.1" FT /translation="MGTSHIKHQRILRMILVFSCLLLVVNNIIVNPNKFLNQRLFLTRI FT LSTSNGCMPFPQHLVPIPMHVLHGRHTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR FT MVLGLDVLVHPYLT" FT gene complement(1100..1504) FT /gene="AC3" FT CDS complement(1100..1504) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BPW8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BPW8" FT /protein_id="ADO40992.1" FT /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI FT ITLRIHFNYNLRKALGIHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVVSINL FT VIKAVEHVLYNVINQTMYVDQYSDIKFNLY" FT gene complement(1197..1649) FT /gene="AC2" FT CDS complement(1197..1649) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BPW9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BPW9" FT /protein_id="ADO40993.1" FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNTQDPFQLQP FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCSFN" FT gene complement(1546..2637) FT /gene="AC1" FT CDS complement(1546..2637) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BPX0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BPX0" FT /protein_id="ADO40994.1" FT /translation="MAAPNRFKIYSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIK FT ICRELHEDGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPL FT YSGTNQSTAQGSEETHQEEESRS" FT gene complement(2178..2480) FT /gene="AC4" FT CDS complement(2178..2480) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BPX1" FT /protein_id="ADO40995.1" FT /translation="MGNLICTCSSSSRANTSARISDSSTWSPQAGQHISIRTFRELNQA FT QMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLESLGS" XX SQ Sequence 2789 BP; 738 A; 561 C; 663 G; 827 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga actcgcgcga tacttttcca 60 gaactcgcgc gagtggtggg tccagaacgc acgactatgc agactcaaag cttagataac 120 gcttcttcgg ctataagtac gtgcgcacta agtttcaatt caaaaaatgt gggatccact 180 attaaacgaa tttccggata cggttcacgg gtttcgttgt atgctatctg taaaatattt 240 gcaacttttg tcgcaggatt attctccaga tacgcttggg tacgagttaa tacgggattt 300 aatttgtatt ttacgctccc gtaattatgt cgaagcgagc tgccgatatc gtcatttcta 360 cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag cccatacacc agccgtgctg 420 ctgcccccat tgtccgcgtc acaaaacaac aggcatggac aaacaggcct atgaacagga 480 aacccagaat gtaccggatg tacagaagtc cggatgttcc aaggggatgt gagggtccct 540 gtaaggtaca gtcgtttgaa tctcgacacg atatcgttca tattggtaag gtaatgtgta 600 tttcggatgt tacgcgtgga gtcggtttga cccatcgtat aggtaagcgt ttttgtgtca 660 agtcagttta tgttttaggt aagatatgga tggacgagaa catcaagacc aagaaccata 720 cgaattcggt gatgtttttc cttgttcgtg atcgacgacc gacagataaa ccacaagatt 780 ttggtgaagt atttaatatg tttgataacg agcccagtat ggcgaccgtg aagaacgtgc 840 atagggatcg gtaccaggtg ttgaggaaat ggcatgcaac cgttactggt ggacaatatg 900 cgagtaagga acaggcgttg gttaagaaat ttgttagggt taacaattat gttgtttaca 960 accagcagga ggcaggaaaa tacgagaatc atacggagaa tgcgttgatg ctttatatgg 1020 cttgtaccca tgctagcaac ccagtttatg ctacgctgaa gattaggata tatttttatg 1080 actctgtaac gaattgaaat taataaagat tgaattttat atctgaatat tggtctacat 1140 acattgtttg attaattaca ttgtacaaaa catgttcgac agctttaata actaaattaa 1200 ttgaaactac accgagattg ttgagatatt tgaggacttg ggttttgaat acccttaaga 1260 aaagaccagt ctgagggtgt aaggtcgtcc agattcggaa ggttagaaaa cacttgtgta 1320 ttcccagagc tttccgtagg ttgtagttga aatggatcct gagtgttatt atgtccatgt 1380 tcgtcgtgaa tggacggttg tcgtggttga ggatcttgaa atagagggga tttggaacct 1440 tccagatata gacgccattc tttgcttgag ctgcagtgat gcgtgcccct gtgcgagaat 1500 ccatggttgt ggcagttgat agagagataa taagaacacc cgcattcaag atctactctc 1560 ctcctcctga tgcgtctctt cgcttccctg tgctgtactt tgattggtac ccgagtacaa 1620 cggttcggtg agaaagacga atgctgcatt ttttaaagcc cacgctttca aagctgagtt 1680 cttttcctcg tccaagaatt ctttatagct tgcgttgggg cctggattgc agaggaagat 1740 tgttggaatg ccgcctttaa tttgaaccgg cttcccgtac ttggtgtttg attgccagtc 1800 cctttgggcc cccatgaatt ctttaaagtg tttcagataa tgcgggtcaa catcatctat 1860 aatgttgaac cacgcatcgt ttgaatacac tttagggctt agatctaggt gaccacacaa 1920 atagttatgt gggcctaatg acctagccca catagttttg cccgtacgac tatctccctc 1980 taagactaaa ctcaaaggtc tcagaggccg cgcagcggcg tccatgacgt tttccgatac 2040 ccattcctca agttcttctg gaacttgatc gaaagaagaa gataaaaaag gagaaacata 2100 aacctccaag ggaggtgtaa aaatcctatc taaattggca tttaaattat gaaattgtaa 2160 gacataatcc ttaggtgcta actccctaat gactctaaga gcctctgact tactgcctgc 2220 gttaagtgct gcggcgtaag cgtcgttggc tgtctgctgt ccccctcttg cagatcgtcc 2280 atcgatctga aactctcccc attcgagggt gtctccgtcc ttgtcgatgt aggacttgac 2340 atctgagctt gatttagctc cctgaatgtt cggatggaaa tgtgctgacc tgcttgggga 2400 gaccaggtcg aagaatcgct gattctggca cttgtatttg ccctcgaact ggatgagcac 2460 gtgcagatga ggttccccat cctcgtgaag ctctctgcag atcttgatga attttttatt 2520 tgttggggtt tgtaggtttt ggagttggga aagtgcttcc tctttagtaa gagagcattt 2580 tggataagta aggaaataat ttttggaata tattttaaac cgattgggtg ctgccatttg 2640 acttagaatt gagtaccgat tgactcgctc tgcaactctc tctggtatat cggtacccaa 2700 tatatagtga gtaccaaatg gcatatgtgt aattttgtaa tgaaattcaa aatcctcacg 2760 ctccaaaaag cggccatccg tataatatt 2789 //