Dbfetch
ID GU112023; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC GU112023; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Bhendi yellow vein India virus [India:Dharwad OYDWR2:2006] segment DNA-A, DE complete sequence. XX KW . XX OS Bhendi yellow vein India virus [India:Dharwad OYDWR2:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2739 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2739 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (29-SEP-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 30d54648ae82efcf883fecd0bf3c989e. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Bhendi yellow vein India virus [India:Dharwad FT OYDWR2:2006]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus (okra)" FT /isolate="OYDWR2" FT /mol_type="genomic DNA" FT /country="India:Dharwad, Karnataka" FT /isolation_source="leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="2006" FT /db_xref="taxon:908028" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BNX1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BNX1" FT /protein_id="ADO40641.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BNX2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7BNX2" FT /protein_id="ADO40642.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMPFLVRDRRPTDKPQDFGEVFNMFDNQP FT DMATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(629..985) FT /gene="AC5" FT CDS complement(629..985) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:E7BNX3" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:E7BNX3" FT /protein_id="ADO40643.1" FT /translation="MGTSHIKHQCILGVILVFSCLLLVVNNIIVNPDKLLNQRLFLRCI FT LTTSNGCMPFPQHLVPIPMHVLNGGHIGLVIKHIKHFTKILWFICRSSITNEERHHRIR FT MVLGLNVLVHPYLT" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BNW7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BNW7" FT /protein_id="ADO40644.1" FT /translation="MDSRKGERITAAHSTNGVYIWKVPNPLYFKILSHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPQTGLFLRVFKTQVFKYLNNLGVISLNL FT VIKAVEHVLYNVINQTMYVDQYSDIKLKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BNW8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BNW8" FT /protein_id="ADO40645.1" FT /translation="MQHSSLSPNRSTPVPIKVQHREAKRAHMRKRVDLECGCSYYLSIN FT CHNHGFSQRGTHHCSSFNEWRLYLEGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT TESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSIQVSQQSRCNLT" FT gene complement(1500..2588) FT /gene="AC1" FT CDS complement(1500..2588) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BNW9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BNW9" FT /protein_id="ADO40646.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIRI FT CRELHEDGNPHLRVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVQTYME FT KDGDILDHGVFQVDGRSATGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFHN FT LNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEEDS FT RTGKTMWARSLSPHNYLCGNLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVSLTQPLY FT SGTNQSSTQGSEESAHEETSGP" FT gene complement(2141..2434) FT /gene="AC4" FT CDS complement(2141..2434) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BNX0" FT /protein_id="ADO40647.1" FT /translation="MGILTCVFSSSSKESSSAGTIDSSTSPPQLGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLQEVAKLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2739 BP; 717 A; 537 C; 652 G; 833 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcggctataa gtacgtgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgagtttccg gatacggttc acgggtttcg ttgtatgcta 180 tctgtaaaat atttgcaact tttgtcgcag gattattctc cagatacgct tgggtacgat 240 ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg 540 taaggtaatg tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacattaa 660 gaccaagaac catacgaatt cggtgatgcc tttcctcgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtgtttaa tatgtttgat aaccagcccg atatggccac 780 cgttaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggtcaa tatgcatcta aggaacaggc gttggttaag aagtttatca gggttaacaa 900 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctactc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agttttaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgaata cttgggtttt 1200 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg taggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ctgaggattt tgaaataaag 1380 gggatttgga accttccaga tatagacgcc attcgttgaa tgagctgcag tgatgcgttc 1440 ccctttgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1500 caaggtccac tcgtttcctc atgtgcgctc tcttcgcttc cctgtgttga actttgattg 1560 gtaccggagt agagcggttg ggtgagagag acgaatgttg cattctttaa agcccaggat 1620 tttaatgctg agttcttatc ctcgtctaag aactctttat agcttgcatt gggccctgga 1680 ttgcagagga agattgttgg tatgccgcct ttaatttgaa ctggcttccc gtattttgtg 1740 tttgattgcc agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga 1800 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg gctaaggtcc 1860 agattcccgc ataaatagtt atgtgggctt aaagacctag cccacattgt ttttccagta 1920 cgactatctt cctcaattac tatactttga ggtctcaggg gccgcgcagc ggcatcgaca 1980 acgttctcgc acgcccactc ttcaagttct tctggaactt gatcaaatga agaagaagaa 2040 aaaggagaaa cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa 2100 ttatgaaatt gaagtagaaa gtctcttggg gctttttcct tcagtatatt gagggcctga 2160 gctttggacc ctgcgttgat tgcctcggca tatgcgtcgt tggcagtttg gcaacctcct 2220 gtagctgatc ttccatcgac ttggaaaact ccatgatcaa ggatgtctcc gtctttctcc 2280 atgtaggttt ggacatcgct tgagctttta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctagttg gggaggtgag gtcgaagaat ctattgttcc tgcactggaa ctttccttcg 2400 aactggatga gaacacgcaa gtgaggattc ccatcttcat gaagttctct gcagattcta 2460 atgaattttt tgtttactgg ggtttggaga tttaagaatt gggaaagtgc ttcttcttta 2520 gtcagggagc acttgggata agtgagaaaa taatttttgg aatatatttg aaagcgtttg 2580 gaaggcatgt tgactacatt gagtaccgat tgactcgctt tggcaactct ctctggtata 2640 tcggtaccca atatatagtg agcaccaaat ggcatatgtg taattttgca atgaaattca 2700 gaatcctcac gctccaggag cggccatccg tacaacatt 2739 //