Dbfetch
ID GU112014; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC GU112014; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Bhendi yellow vein India virus [India:Srinivaspur OYSK3:2006] segment DE DNA-A, complete sequence. XX KW . XX OS Bhendi yellow vein India virus [India:Srinivaspur OYSK3:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2744 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2744 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (29-SEP-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 049bb292af271bd39629bd0c3feeb911. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Bhendi yellow vein India virus FT [India:Srinivaspur OYSK3:2006]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus (okra)" FT /isolate="OYSOK3" FT /mol_type="genomic DNA" FT /country="India:Srinivaspur, Karnataka" FT /isolation_source="leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="2006" FT /db_xref="taxon:908055" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BNQ4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BNQ4" FT /protein_id="ADO40578.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BNQ5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7BNQ5" FT /protein_id="ADO40579.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFWIVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(629..985) FT /gene="AC5" FT CDS complement(629..985) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:E7BNQ6" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:E7BNQ6" FT /protein_id="ADO40580.1" FT /translation="MGTSHIKHQCILGVILVFSCLLLVVNNIIVNPDKLLNQRLFLRCI FT LTTSNGCMPFPQHLVPIPMHVLNGGRTGLVIKHIKYFTKILWFICRSSITNNPKHHRIR FT MVLGLDVLVHPYLT" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BNQ7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BNQ7" FT /protein_id="ADO40581.1" FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISLNL FT VIKAVEHVLYNVINQTMYVDQYSDIKLKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BNQ8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BNQ8" FT /protein_id="ADO40582.1" FT /translation="MQHSSLSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT" FT gene complement(1500..2591) FT /gene="AC1" FT CDS complement(1500..2591) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BNQ9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BNQ9" FT /protein_id="ADO40583.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIR FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSATGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVSLTQPL FT YSGTNQSSTQGSEESAQEETSGP" FT gene complement(2141..2434) FT /gene="AC4" FT CDS complement(2141..2434) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BNR0" FT /protein_id="ADO40584.1" FT /translation="MGILTCMFSSSSKESSSAETIDSSTSPPQLGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLQEVAKLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2744 BP; 723 A; 529 C; 652 G; 840 T; 0 other; accggatggc cgcgcgattt ttttaactgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcgactataa gtacgtgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgagttcccg gatacggttc acggttttcg ttgtatgctt 180 tctgtgaaat atttgcaact tttgtcgcag gagtattcac cagatacgct tggttacgat 240 ttaatacggg atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagccctta 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgttg tccatattgg 540 taaggtaatg tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt ttggattgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggccac 780 cgttaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggtcaa tatgcatcta aggaacaggc gttggttaag aagtttatca gggttaacaa 900 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctactc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agttttaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt 1200 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ctgaggattt tgaaataaag 1380 gggatttgga acctcccaga taaagacgcc attcgttgaa tgagctgcag tgatgcgttc 1440 ccctgtgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1500 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga actttgattg 1560 gtaccggagt agagcggttg ggtgagagag acgaatgttg cattctttaa agcccaggat 1620 tttaatgctg agttcttatc ctcgtctaag aactctttat agcttgcatt gggccctgga 1680 ttgcagagga agattgttgg tatgccgcct ttaatttgaa ctggcttccc gtattttgtg 1740 tttgattgcc agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga 1800 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg gctaaggtcc 1860 agatgcccgc ataaatagtt atgtgggcct aaagacctag cccacattgt ttttccagta 1920 cgactatctc cctcaattac tatactttga ggtctcaggg gccgcgcagc ggcatcgaca 1980 acgttctcgc acgcccactc ttcaagttct tctggaactt gatcaaatga agaagaagaa 2040 aaaggagaaa cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa 2100 ttatgaaatt gaagtagaaa gtctcttggg gctttctcct tcagtatatt gagggcctga 2160 gctttggacc ctgcgttgat tgcctcggca tatgcgtcgt tggcagtttg gcaacctcct 2220 gtagctgatc ttccatcgac ttggaaaact ccatgatcaa ggatgtctcc gtctttctcc 2280 atgtaggttt tgacatcgct tgagctttta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctagttg gggaggtgag gtcgaagaat ctattgtttc tgcactggaa ctttccttcg 2400 aactggatga gaacatgcaa gtgaggattc ccatcttcat gaagttctct gcagattcta 2460 atgaattttt tgtttactgg ggtttggaga tttaagaatt gggaaagtgc ttcttcttta 2520 gtcagggagc acttgggata agtgagaaaa taatttttgg catttatttt aaaccgattg 2580 ggtgctgcca tgttgactta gtcaatcggt gtctctcaac tctctctatg tatcggtgta 2640 ttggagtcct atatatatgg agactctaat ggcataaatg taaataaaag aactttaatt 2700 tgaaattcaa aggaaaaggc taaagcggcc atccgtctaa tatt 2744 //