ID   GU111229; SV 1; linear; genomic RNA; STD; VRL; 2214 BP.
XX
AC   GU111229;
XX
DT   11-NOV-2009 (Rel. 102, Created)
DT   15-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cucumber mosaic virus isolate New Delhi segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2214
RX   DOI; 10.1007/s10528-010-9382-8.
RX   PUBMED; 20978836.
RA   Koundal V., Haq Q.M., Praveen S.;
RT   "Characterization, genetic diversity, and evolutionary link of Cucumber
RT   mosaic virus strain New Delhi from India";
RL   Biochem. Genet. 49(1-2):25-38(2011).
XX
RN   [2]
RP   1-2214
RA   Koundal V., Dubey D., Praveen S.;
RT   ;
RL   Submitted (15-OCT-2009) to the INSDC.
RL   Division of Plant Pathology, I.A.R.I., Pusa, New Delhi, Delhi 110012, India
XX
DR   MD5; 15ad227dd9d9f786e1b5f9aaa8931f9e.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   RFAM; RF01084; TLS-PK3.
XX
CC   GenBank Accession Numbers GU111227-GU111229 represent the complete
CC   genome of Cucumber mosaic virus isolate New Delhi.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2214
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="tomato"
FT                   /isolate="New Delhi"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /db_xref="taxon:12305"
FT   CDS             122..973
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /note="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:D1LZE1"
FT                   /protein_id="ACY66904.1"
FT                   /translation="MAFQGTSKTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADIGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCTMETVGNRKRCFAVVIE
FT                   RHGLYWGIPVPASVCSNWQARFSSKNYNSHRSAAGNTLTFPLNSLAGGKKPSAIASLPK
FT                   SQLNSIESSQYVLTNAKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGTLV
FT                   FS"
FT   CDS             1255..1911
FT                   /codon_start=1
FT                   /product="3b protein"
FT                   /note="coat protein"
FT                   /db_xref="GOA:Q9WAB3"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WAB3"
FT                   /protein_id="ACY66905.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2214 BP; 506 A; 523 C; 539 G; 646 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt gcgtgtgtcg cgtcgtgtcg agtcgtgttg        60
     tccgcacata agagtcgtgc tgtccgcaca ttttcttttc agtgtgttag attcccgagg       120
     catggctttc caaggtacca gtaagacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc catggtcgta ttgcttcttt ctttaagtct ggatatgatg ctggtgaatt       360
     aagctctaaa ggatatatga gcgttcctca agtgttgtgt gctgttactc gaacagtttc       420
     caccgacgct gagggatctt tgagaattta cctagctgat ataggcgaca aggagttatc       480
     tcctatagat ggacagtgcg tcacattaca taaccatgat ctacccgctt tagtgtcttt       540
     ccaaccgacg tatgattgta ctatggaaac cgttgggaat cgtaagcggt gtttcgctgt       600
     tgttatcgaa agacatgggt tatattgggg tataccggta ccagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaatta caactcacat cgcagcgcag ctgggaacac       720
     cctcacattt ccgcttaaca gcctagctgg gggaaagaaa ccgtctgcca tcgctagcct       780
     gccgaagtcg caattgaaca gcatagaatc ttcgcaatac gttttaacga atgcgaagat       840
     caatcagaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat       900
     cgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta acggtacttt       960
     agtgttttcg tagcgtttta gtatatagtt atatgtgagt ctgtacataa tattatatct      1020
     atagtgtcct gtgtgagttg atacagtaga cactgtgacg cgatgttgtg ttgagaagag      1080
     agcacatctg gttttagtaa acccacaaca tatctttgag gttcaattcc tctcgttccc      1140
     tgttgggccc ctttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcctaagagt attgtgctgt gtttactctt tgtgtagtag atttgagtcg agtcatggac      1260
     aaatctgaat caaccagtgc cggtcgtaat cgtcgacgtc gtccgcgtcg tggttcccgc      1320
     tccgcttcct cctccgcgga tgctaacttt agagtcttgt cgcagcagct ttcgcgactt      1380
     aacaagacgt tagcagctgg tcgtccaact attaaccacc caacctttgt gggtagtgaa      1440
     cgctgtaaac ctgggtacac gttcacatct attaccctga agccgccaaa aatagaccgc      1500
     gggtcttatt atggtaaaag gttgttgcta cctgattcag tcacggagtt cgataagaag      1560
     cttgtttcgc gcattcaaat tcgagttaat cctttgccga aatttgattc taccgtgtgg      1620
     gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgctat ctctgctatg      1680
     tttgcggacg gagcctcacc ggtactggtt tatcagtatg ctgcatccgg cgttcaagcc      1740
     aacaacaaat tgttgtacga tctttcggcg atgcgcgctg atattggcga catgagaaag      1800
     tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagtt ggtacttcat      1860
     gttgacatcg agcaccaacg cattcccaca tctggggtgc tcccagtttg aatccgtgtt      1920
     tttcccagaa tcctccctcc ggtcctgtgg cgggagctga gttggtagtg ttgctataaa      1980
     ctgcctgaag tcactaaacg ctttgcggtg aacgggttgt ccatccagct tacggctaaa      2040
     atggtcagtc gtggagaaat ccacgccagt agacttacaa gtctctgagg tgcctttgaa      2100
     accatctcct aggtttcttc ggaaggactt cggtccgtgt acttctagca caaggtgcta      2160
     gttttagggt acgggcatcc ccccacttca gtgggggtct ctcgaaggag acca            2214
//