ID GU111228; SV 1; linear; genomic RNA; STD; VRL; 3042 BP. XX AC GU111228; XX DT 11-NOV-2009 (Rel. 102, Created) DT 15-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Cucumber mosaic virus isolate New Delhi segment RNA2, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3042 RX DOI; 10.1007/s10528-010-9382-8. RX PUBMED; 20978836. RA Koundal V., Haq Q.M., Praveen S.; RT "Characterization, genetic diversity, and evolutionary link of Cucumber RT mosaic virus strain New Delhi from India"; RL Biochem. Genet. 49(1-2):25-38(2011). XX RN [2] RP 1-3042 RA Koundal V., Dubey D., Praveen S.; RT ; RL Submitted (15-OCT-2009) to the INSDC. RL Division of Plant Pathology, I.A.R.I., Pusa, New Delhi, Delhi 110012, India XX DR MD5; e114b722e1b85704cbad7d51c191b6ab. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers GU111227-GU111229 represent the complete CC genome of Cucumber mosaic virus isolate New Delhi. XX FH Key Location/Qualifiers FH FT source 1..3042 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="tomato" FT /isolate="New Delhi" FT /mol_type="genomic RNA" FT /country="India" FT /db_xref="taxon:12305" FT CDS 80..2653 FT /codon_start=1 FT /product="2a protein" FT /note="polymerase" FT /db_xref="GOA:D1LZD9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D1LZD9" FT /protein_id="ACY66902.1" FT /translation="MAFPAPTFSLANLLNGSYGVDTPEEVERVRSEHREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPSEEVSVEFVSYGAEDYLEKSDDELLIAFETMVKP FT MRIGQLWCPEFDKCLFISSVAMARALLLAPRTSPRTMKCFEDLVAAIYTKSDFYYDDEC FT ETDDVQIDISSRDEPGYSFEPWSRSSGFEPPPICEAGDMIMYQCRCYDFNALKKSCTER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPKPTVAIPPDLNRATDRVDIN FT LVQSICDSTLPTHNSYDDSFHQVFVESAVYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKPVAEGFFISYINGNSLASSN FT FFNVVSNFHDYMEKRKSSGLSYDDLPDLHAENMQFYDHMIKSDVKPVVSATLNIDRPVP FT ATITYHKKGKTSQFSPLFTALVERFQRCLRGRIILRVGKISSLEMGGFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPGPLREIQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALILGAFKKYTANFQSYKELYYSDRRQC FT ELINSFSCSELRIDRSISTKQRKKKDGIERRRSDKRRTPAGSYDGGEETKTKVSQEEST FT GTRSQKSQREGAFKSQTIPIFTVLSDRWFGTNRDVPPRDGGIVRV" FT CDS 2415..2747 FT /codon_start=1 FT /product="2b protein" FT /note="RNAi suppressor" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:D1LZE0" FT /protein_id="ACY66903.1" FT /translation="MELNEGAVTNVELQLARMMEVRRQRRKSHKKNRRERGHKSPSERA FT RSNLRLFRFLPFCQIDGSELIEMYHHAMVELSESEAPRFTLPAEEGHDFDDTDWFAGND FT WAEGSF" XX SQ Sequence 3042 BP; 779 A; 668 C; 703 G; 892 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccg tgtaaaactc gaaacatttt 60 tcaagtttcc aattttccta tggcttttcc cgcccctact ttctcactgg ccaatctttt 120 gaatggcagt tacggtgtcg acactcccga ggaagtagaa cgcgtgcgat ctgagcatcg 180 cgaagaggct gctgcggcct gtcgtaatta caggccctta cccgctgtgg atgtcagcga 240 gagtgtcaca gaggatgcgc attccctccg aactccagac ggagctccct ctgaagaggt 300 gtctgttgag tttgtctctt atggtgctga agattacctt gaaaaatctg atgatgagct 360 ccttatcgct tttgagacga tggtcaaacc catgcgtatc ggtcaactat ggtgccccga 420 gttcgataaa tgtttattta tctccagcgt tgctatggcc agagctttgc tgctagcacc 480 tagaacatcc ccccgaacca tgaagtgttt tgaagacctg gtcgcggcta tttacactaa 540 atccgatttc tattacgatg atgagtgtga aaccgacgac gttcagatag atatctcgtc 600 tcgcgatgaa cccggttatt ctttcgaacc gtggtcccga tcctctggat ttgaaccacc 660 gcctatctgt gaggcgggtg acatgatcat gtaccagtgc cgatgttatg attttaacgc 720 tttaaagaaa tcatgcactg agaggacttt tgctgacgat tatgttattg aaggtttaga 780 tggtgttgtt gacaatgcaa ctttgttgtc gaatttaggc ccgtttttgg tgcctgtgaa 840 atgtcaatat gagaaatgtc caaaacctac cgtcgcgatt cctccggatt taaatcgtgc 900 tactgatcgt gttgatatta atttggttca atccatttgt gactcgactc tgcccacaca 960 caatagctac gacgactctt ttcatcaggt gtttgtcgaa agcgcggttt attctattga 1020 tctggatcat gttagacttc gacagtctga tcttattgcg aaaattccag attcagggca 1080 tatgataccg gttttgaata ccgggagcgg tcacaagaga gtaggtacta cgaaggaggt 1140 ccttacagca atcaagaaac gtaatgctga cgttccagag ctaggtgatt ccgttaatct 1200 gtctaggttg agtaagcctg tggctgaggg gtttttcatt tcatatatta atggcaactc 1260 tctagcatcc agcaactttt ttaatgtcgt tagtaacttc cacgattaca tggagaaaag 1320 gaagtcctca ggtctttcgt atgacgatct tccagatctt catgctgaaa atatgcaatt 1380 ttatgatcac atgataaaat ctgatgtgaa acctgtagtg agcgccacac tcaacattga 1440 cagaccggtt ccagctacta taacgtatca caagaaaggt aaaacctccc agttctcacc 1500 gttattcaca gcgctagtag agcgcttcca gagatgcctt cgaggacgta tcattcttcg 1560 tgtcggaaag atttcatccc ttgagatggg gggattcgat gttaagaata aacattgtct 1620 cgagattgat ttgtctaaat tcgacaagtc tcaaggtgaa tttcatttga tgattcagga 1680 acatattttg aatggtctag gatgcccagc tccgataact aaatggtggt gtgatttcca 1740 tcgattctct tacattagag atcgtagagc tggtgttggt atgcccatca gtttccaaag 1800 acgaactggt gacgcattca cttattttgg taacaccata gtcaccatgg ctgaatttgc 1860 atggtgttac gacaccgacc aattcgaaaa gcttctgttc tcaggcgacg attctctagg 1920 attttcatta cttccccctg ttggtgatcc gagtaaattc acgactctct tcaacatgga 1980 agctaaggtg atggaacctg cagtaccata tatctgttcg aagttcttac tctctgacga 2040 gttcggtaat actttttccg ttccaggtcc attgcgtgag attcagcggt taggaacaaa 2100 gaagatcccc tattctgata atgatgaatt cctatttgct catttcatga gctttgtcga 2160 tcgattgaag tttctggaca gaatgactca atcctgcatc gatcaacttt cactcttttt 2220 cgagttgaaa tataggaagt ctggggctga ggctgcttta atattaggcg cctttaagaa 2280 atataccgct aatttccaat cctataaaga actctactat tcagatcgtc gtcagtgcga 2340 attgatcaat tcgtttagtt gttcagagtt gaggattgat cgttcgattt ccactaaaca 2400 gcgaaagaag aaagatggaa ttgaacgaag gcgcagtgac aaacgtcgaa ctccagctgg 2460 ctcgtatgat ggaggtgagg agacaaagac gaaagtctca caagaagaat cgacgggaac 2520 gaggtcacaa aagtcccagc gagagggcgc gttcaaatct cagactattc cgatttttac 2580 cgttttgtca gatagatggt tcggaactaa tagagatgta ccaccacgcg atggtggaat 2640 tgtccgagtc tgaggctcct cggtttacgt taccagcgga agaaggccat gattttgacg 2700 acacagattg gttcgctggt aatgactggg cggaagggtc gttctgaact tcccctttcc 2760 tttctccctc cagttttctg aggcgggagc tgagttggca gtactgctat aaactgtctg 2820 aagtcactaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct aaaatggtca 2880 gtcgtggaga aatccacgcc agagacttac aagtctctga ggtgcctttg aaaccatctc 2940 ctaggtttct tcggaaggac ttcggtccgt gtacttctag cacaatgtgc tagttttagg 3000 gtacggcatc cccccctcag tgggtcctcc aaaaggagac ca 3042 //