ID GU111227; SV 1; linear; genomic RNA; STD; VRL; 3358 BP. XX AC GU111227; XX DT 11-NOV-2009 (Rel. 102, Created) DT 15-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Cucumber mosaic virus isolate New Delhi segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3358 RX DOI; 10.1007/s10528-010-9382-8. RX PUBMED; 20978836. RA Koundal V., Haq Q.M., Praveen S.; RT "Characterization, genetic diversity, and evolutionary link of Cucumber RT mosaic virus strain New Delhi from India"; RL Biochem. Genet. 49(1-2):25-38(2011). XX RN [2] RP 1-3358 RA Koundal V., Dubey D., Praveen S.; RT ; RL Submitted (15-OCT-2009) to the INSDC. RL Division of Plant Pathology, I.A.R.I., Pusa, New Delhi, Delhi 110012, India XX DR MD5; 5a493d38ab38960840af0a3c27c77059. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers GU111227-GU111229 represent the complete CC genome of Cucumber mosaic virus isolate New Delhi. XX FH Key Location/Qualifiers FH FT source 1..3358 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="tomato" FT /isolate="New Delhi" FT /mol_type="genomic RNA" FT /country="India" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /product="1a protein" FT /note="required for viral replication; contains methyl FT transferase and helicase motifs" FT /db_xref="GOA:D1LZD8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D1LZD8" FT /protein_id="ACY66901.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAANCKVQGHAIISIHEGYRIRLRGLCEAMNAHRITILMGSMMFDCAMMFDDK FT GVLPELNCQWRKIRSAFSETEDVTPLSEKLNSTIFSPVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIDFAILLHTKMKYEQLGKMYDMWNASHISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNVECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRHEASSSTPDDTADVCGRERDVDRFDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGFNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYNKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC FT IARA" XX SQ Sequence 3358 BP; 838 A; 745 C; 809 G; 966 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttgatcttt tctctgaaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actgctcgcg accgccctcg ttgataagac 180 agctcatgag cagcttgagg agcaattaca acatcaacgt aggggccgta aggtctacat 240 ccggaacgtt ctgggtgtaa aggattccga ggtcatccgg aatcggtatg gagggaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcttca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacacaacg tacactgctg 480 ttccccttgt ttgggtatcc gcgataaaat gcgccatgcg gaacgtttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcga cagccagatt tctgcactca 600 tccggctgcg aattgcaaag ttcaaggcca cgccatcata tctattcatg aaggttaccg 660 tattcgcctt agaggacttt gtgaagcaat gaacgctcac agaatcacta ttttgatggg 720 atcgatgatg ttcgattgtg cgatgatgtt tgacgataag ggtgtattac ctgaacttaa 780 ttgccagtgg agaaagatca ggagtgcttt ctctgaaact gaggacgtca cgccgttgtc 840 tgagaaactt aattccacaa tattctcccc tgtgcgtaaa ttcaagacca tggtggcctt 900 tgattttatc aatgagtcta ccatgtctta tgttcatgat tgggagaata taaagtcttt 960 tcttacagat cagacctact cataccgagg gatgacttac ggtattgagc gttgcgttat 1020 tcacgccggc attatgacgt ataagatcat tggtgtacct gggatgtgtc cacccgaact 1080 cattcgacat tgtatttggt tcccctctat taaggactat gttggtctaa agattcccgc 1140 gtcgcaggac ttggttgaat ggaaaacagt gcgtatttta acgtcaacat tacgtgagac 1200 ggaagagatt gctatgaggt gttacaacga taagaaagcg tggatggaac aatttaaagt 1260 tattttaggt gttctatctg cgaaatcatc taccattgtt atcaatggta tgtccatgca 1320 atctggcgag cgtatcgaca tcaacgatta tcattatatc gacttcgcca tccttcttca 1380 cacaaaaatg aagtatgaac agttgggaaa aatgtacgat atgtggaatg cttcgcatat 1440 ttcgaagtgg tttgcagcgt tgactcgtcc gctgcgtgtg tttttctcca gcgttgttca 1500 cgcattgttt ccgactttga gaccgcgcga ggaaaaggaa ttcctgatta agctctccac 1560 ctttgtaact ttcaatgtag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atctgctgca tacgttgcta cgcaggctgt taccgatggg aaagttttgg ctgcgcagaa 1680 agccgagaag ctcgctgaga agcttgcaca acccgtgatt gaggtatcgg acagacatga 1740 ggcctcatct tcaacgcctg atgatactgc tgatgtttgt ggaagggagc gagacgtaga 1800 ccgatttgac tccctatcag ctcaaacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacagtta catgacacta cggtgtctaa 1920 tctgaagcgt atttggaata tggcgggtgg tgatgacaag agaaactccc tcgaaggtaa 1980 tttgaagttt gtttttgaca cgtatttcac tgttgacccc atggtgaata tccatttctc 2040 cacgggtcga tggatgcgtc ctgtgcctga gggaattgtt tactctgttg gttttaatga 2100 acgcggacta ggtccgaagt ctgatggaga gctttacatt gttaatagtg agtgcgtgat 2160 ttgtaatagt gagtctttat ctactgtcac tcgctcgctt caagccccaa ccggaactat 2220 tagtcaagtc gacggagttg caggttgtgg gaagaccaca gcaataaaat caatttttga 2280 gccgtccact gacatgatcg taaccgcgaa caagaaatcc gcccaagacg ttcgtatggc 2340 actctttaaa tcgtcggatt ccaaagaagc ttgcaccttc gttcgtactg ccgattctgt 2400 cctacttaat gaatgtccaa ctgttagtag ggttttggtc gatgaagttg tgctgcttca 2460 ctttggtcaa ttgtgtgctg tcatgtctaa gctgaaggct gtgcgagcta tatgtttcgg 2520 ggattctgag cagattgcct tctcttctcg tgatgcttcg tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgcgga taccacattc cgtagcccac aagatgtcgt 2640 gcctcttgtg cgtctgatgg ctacgaaggc tctcccgaaa ggaactcatt cgaaatacaa 2700 taaatgggtt tctcaatcta aggtgaaaag atctgttacg tctcgtgcca ttgccagtgt 2760 gacattggtt gatttagatt cttccaggtt ttatatcacg atgactcaag ctgacaaggc 2820 ttcactgatt tcgagagcga aagagatgaa cttaccgaag accttttgga atgaaaggat 2880 taagactgtg catgagtctc agggtatctc tgaagaccac gttactttgg taagactgaa 2940 gagcacgaaa tgtgacctgt tcaaacagtt ttcgtactgt cttgttgcct tgacaagaca 3000 taaggtcaca ttccgctacg agcattgtgg tgtattaaac ggcgatttaa tcgccgaatg 3060 tattgctcgt gcttagcggc ttccctcctt cgggcgggat ctgagttggt ggtaatctac 3120 aaaccatctg aagtcactaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct 3180 aaaatggtca gtcgtggaga aattcacgcc agtagactta caagtctctg aggtgccttt 3240 gaaaccatct cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaagatg 3300 ctagtttcag ggtacgggca ccccccccac ttcgtggggg gcctccaaaa ggagacca 3358 //