ID GU108594; SV 1; linear; genomic RNA; STD; VRL; 6595 BP. XX AC GU108594; XX DT 31-DEC-2010 (Rel. 107, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Grapevine associated totivirus-2 isolate Ctg341 hypothetical protein gene, DE complete cds; and putative RNA-dependent RNA polymerase gene, partial cds. XX KW GDS. XX OS Grapevine associated totivirus-2 OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6595 RX PUBMED; 21140178. RA Al Rwahnih M., Daubert S., Urbez-Torres J.R., Cordero F., Rowhani A.; RT "Deep sequencing evidence from single grapevine plants reveals a virome RT dominated by mycoviruses"; RL Arch. Virol. 0:0(2010). XX RN [2] RP 1-6595 RA Al Rwahnih M., Rowhani A., Daubert S.; RT ; RL Submitted (15-OCT-2009) to the INSDC. RL Department of Plant Pathology, University of California, Davis, One Shields RL Avenue, Davis, CA 95616, USA XX DR MD5; ee857c61258ec239dfe77367e985c085. DR EuropePMC; PMC4357927; 25595766. XX FH Key Location/Qualifiers FH FT source 1..6595 FT /organism="Grapevine associated totivirus-2" FT /host="Vitis vinifera cv. Syrah" FT /isolate="Ctg341" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="10-Jun-2008" FT /db_xref="taxon:908837" FT CDS 766..4707 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:E7BMX6" FT /protein_id="ADO60932.1" FT /translation="MMSSYGIKTVNQTATVAVDASAENGAQINRGSNLDSSFTAGVNYS FT GNLSSVSKADLLVHAQHSKNEQFSFVFLSRWQRFCTAIIAFFTSFVALFEREIYSVFLS FT PHLLILRSNIAQQTVSPALYNFPSRHTYHMLGYRWSCIPLLLYSYGFLSFSQAEHFRNI FT QKFSDLPLSLRMSILRHRRSAILVRVSFQHVENVLAPSTTGSYELLSLRILLNSEAAYF FT ATPYSTAESKPTMEFSTPSVPALGGARAVLTQLPTSARAAGLSKKWSPQMYPTQAVDQR FT VVFDVTARGIKSLRENNFVRSFPENLPQPRQPTHFSELLTSILAGRLSTSTAPAANTVA FT TQFNRSWQRQPIVDRTLAPQHAGLASVLEGIDYSKQSLAAAEQAVSINRFLDTRGNRII FT PRWEADQWNRWSGITSLYSLGQSDRSYLQIAYRLLARYYFALLAEELPEMTPLVTTVGT FT NTTLTGLTTLLAPPAPPVPGQPIPLPVNPEAALFTQAAFSGLKTGTAQLVDAEGLSEDE FT LIELLSAIVPVESANIPLLSTAANPPETFFPGPTRYTYDNKVNEVFIHFGNNAIPDLAQ FT LATEVHRIPHAAQILSVLRYLAMRHGAAQDIDDALEILMARVVLYTNSTQLRGLRNNAP FT VGEYINSDGHYEMHLPLAKTGSAYFDSFMVPHAMTGDLPAFASLPARSVINNGVLFAQA FT RAAALNWAAAAWSMSGRSWVNSPGRENNSYVRNHIDVFLRKYSSDILNLWTSNHNNALA FT FHVGWSLSATARSTEANVVVNWWNDYHSPTLTNAYLELWQVECLPSHQVLPWDDRETPS FT TVSWPSNTPFPIHDAYSFSSHLHVQVARDTPAEVGRTFMGDGGAIANAQHFAAIGSVNG FT FRFEDAANAPKISIARWRQRHAFQFPVAPASQAPVWMAEPGSPFADFLSPGSMNSHNVE FT ANVAYSYGLTTADDVTTLDRRYTAQLWFDAARQVPKRSLMVNYVSPFPDRREFSSLQDY FT SIIVWEKENAYAGMSLVPVDFSPVSIADYKPAANLTFPSLTRPSAVDTSDIAKNPRVAS FT SKRAPRAAASDILSRLKEFNSPAPTPPSPGLSQREPAAQLSYEAKYPVEESQVPADFRF FT YQPVVEEDRVHVEPADAPDAYDRLSKQQLKLAIENNMQLLAKIQNSPILGELDLDAERK FT RREDFQKVESARNERIQRRSSFVPFGPTRPRPVLTPRAPAAKRPQVHGKLPPSEVKHAP FT VEINDAAAEQVQRQIPQLGRPVSPRTITDPFAALKADKANPGTYYQKSSEDLAFDALGK FT EQLPQANFGHTGADVSVQDGIATDSLAKN" FT CDS 4755..>6595 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:E7BMX7" FT /db_xref="UniProtKB/TrEMBL:E7BMX7" FT /protein_id="ADO60933.1" FT /translation="MLSAYELLSKHSQGAKRVVAGLTDSMSASTYKMSGTTYPGWDFSR FT LYSKYNLSTPPNSYEAAAVASVLLNPRPDALNLGISPIYATNDLYATPSPVKPGIGSAW FT LTDFSNTRLHELQRERFHQSDFIHPSLKDFCLFANYGESKTASCATRVLQLLGCAYPLV FT DSHHLALAKQSLRLGDPNKLGMEQPALANYLIAAWSPHSMVFDDSNAIEGVDEEVYARL FT HATFPLAPILVCLHDGHVTYAIRRKFLYAELTNYRAAYQNASPHLSAHEKELLTASYPK FT NIGRAGGRVHLTLEMLLKTPLEPAQRALLLGFLKHRNAGNDFEQVFITTVALVPFLEGP FT AGRDLTLFFLRNMPVICSLSTNQVAKWLKAAHAHARIFQCLPGLALPAITIQEIRMYGD FT LIYGLDSLVGRSELMKLDFTAELFMRTADPIRRAVPTLTRTSLGYELTLSEELYETYED FT RAINTTFREVLPEKLNLESFEAWYARRMFWGASGGAPGAKITWSDREGGDKLRLNKRGA FT LLAIPAMHFTKILERAVSPVLWSVKALKFEPGKLRSILNTSMEHYVMQAYLLDHFDANV FT NSGTWYAIANAGAARLAAHARRLESLRHSVGFMWDFA" XX SQ Sequence 6595 BP; 1633 A; 1677 C; 1496 G; 1789 T; 0 other; ccagtgtagt agggggcagg aaagaacgaa gcacgtgctt atcggtttgg ctcacccaac 60 ttgggcgaaa tcgtagcgtg tggatactca aagtgtcaag gtacagtcaa catgcaaaca 120 cgactagtac cgaaaactcc cacaaacttt gaggcctact acagagcgta caagtgctag 180 ggtagaaaga gctggggcta taacccccgg atctcttatc aggccagcac cgctcagccc 240 ctctttttgt gtaaatccca cccggtctag cggagtggga cgcatataaa atgagcgtgt 300 aacatcgctc aacccgtcca agcacatgac actaaactgt actcgcccag gatatggcgt 360 taaactgtac cgtccgcgtt tgccagcggt taaaacaacg gcttttcatc acagccgcgt 420 gcgagtccgc gggataataa atgttctaac agactcgaaa agacatccta ttttcaagtt 480 ctcgtcgcta cgttaaacgt cggcatttct tggatctggt ggggtaacat acaagtcaag 540 tatggtgtga accggggcta cacaactacc gggaagctaa cgtaactgcg ctggtgctct 600 actttcaacg tgcttcagga ccgaaaccgt ccgtaaacca atgggttgca cagaaagtaa 660 aggcgtaggg aacgtgccta ggacaagaac taggtggaca gactgacact catcagtgct 720 ttctcgattg aaagcagtag caaacagtcg gtgcgggaac tccgcatgat gtcttcttac 780 gggatcaaga cggtaaacca gactgctacg gtggcagtcg atgcatcagc cgaaaatggt 840 gcacaaatta accggggtag caacctagat agctcattca ccgctggtgt caactacagc 900 ggtaaccttt catctgtatc aaaagcagat ctccttgtgc atgctcagca ctctaaaaat 960 gagcaatttt cttttgtttt tctctctaga tggcagcgct tttgcactgc tatcattgca 1020 ttctttactt cttttgttgc gctctttgaa cgcgaaattt actctgtttt tctttctcca 1080 catttgctaa ttttgcgatc taacatagcg caacaaaccg tctcgcctgc actatacaat 1140 ttcccttctc ggcacacata tcatatgttg ggctatcgct ggagttgtat tccactgttg 1200 ttatattctt acggtttctt atcattctcg caagcggagc attttcgtaa catccaaaaa 1260 ttctctgact tgcccctttc tcttagaatg tcgatactaa ggcaccgtcg atctgccatt 1320 ctagtgcgcg ttagtttcca acacgttgaa aacgtgttag ctccgtccac tactgggtct 1380 tatgaattac ttagtctgcg aattcttttg aattcagagg ctgcgtactt cgcaacacct 1440 tactctacgg ctgaatctaa accaactatg gaattttcta ctccgtcggt tcccgccctc 1500 ggtggagcgc gagctgtttt aacgcagctc ccaacctccg ctagagcagc tgggttgagc 1560 aagaaatggt cgccgcaaat gtatcctacg caagcggttg accagcgtgt agtgtttgac 1620 gtgactgcta gaggtattaa gagtttgagg gaaaacaatt ttgtacgctc tttcccagaa 1680 aatttgcccc aaccgcgtca acccacacat ttctcggaac tgttaactag cattcttgct 1740 ggtcgacttt ctacttctac ggctcctgct gccaacacgg ttgccactca gtttaaccgc 1800 tcttggcaac gtcaaccaat tgttgatcga acactcgctc ctcagcatgc tggtctggcc 1860 agtgttctgg aaggtatcga ttattcgaaa cagtctttgg ctgcagctga acaagccgtt 1920 tcaatcaata ggttcttaga cactcggggt aaccgtatca ttcctagatg ggaagcagat 1980 caatggaata ggtggagtgg tattacttct ttgtattcac tcggccagtc ggatcgcagt 2040 taccttcaaa ttgcttaccg gttgttagct cggtactact ttgctctgtt ggcagaggaa 2100 ttacccgaaa tgactccatt agttacaact gttggtacta atacgacgct aactggcttg 2160 actactctac tcgctccccc tgctccgcca gttcctggtc agcccattcc actgccggtt 2220 aaccctgaag ctgccttgtt cactcaagcg gcattctcag gacttaaaac aggcacggca 2280 cagctggttg acgccgaagg tttgagcgag gatgaactca ttgaactctt atctgccata 2340 gtccctgtgg aaagtgccaa tatcccgtta ttgagcactg ctgcgaatcc accagaaacg 2400 tttttcccag gaccaactag atacacttat gataataagg tcaatgaggt atttatccac 2460 tttggcaata atgctattcc ggatctggcg caactcgcca ctgaagtcca tcggattccg 2520 catgctgcgc aaatcttgtc tgtcttacgt tacctcgcta tgcgtcatgg tgcagctcaa 2580 gatattgatg atgctttgga gattctaatg gcacgggtgg ttttatatac taattccact 2640 cagctacgtg gtcttcgcaa taacgcgccc gtcggagaat acattaattc agacggacac 2700 tacgaaatgc atctaccctt agctaaaacg ggttcggctt attttgactc ttttatggtc 2760 ccccatgcta tgactggcga tctacctgct ttcgctagcc tacctgctag gagtgttata 2820 aataatggag tcttattcgc ccaagcgcgc gctgctgcac tcaattgggc ggctgctgct 2880 tggagtatgt ctggtagatc ttgggtgaac tcgccagggc gtgaaaacaa ttcttatgtg 2940 cgtaatcaca ttgatgtctt cttgcgcaaa tactctagcg acattcttaa tctttggact 3000 tctaaccaca acaatgctct ggctttccac gtcgggtggt cactctccgc cactgcacgc 3060 agtacagaag caaatgttgt agttaactgg tggaatgact accattctcc tactctcacc 3120 aatgcttacc tcgaattatg gcaagttgaa tgcttgcctt cgcatcaagt actaccgtgg 3180 gatgatcgag aaacaccttc cactgtgtca tggccgtcga acactccgtt ccctatccat 3240 gatgcctatt cgttttcgtc acacttgcac gttcaagtcg cccgcgatac tccagctgaa 3300 gttggtcgta ccttcatggg cgacggtggt gctattgcga acgcgcagca ctttgctgcc 3360 attggttcag tgaatggttt cagattcgag gacgcggcta acgctcctaa gatatcaatc 3420 gctcgctgga ggcagcgcca cgctttccag ttccctgtcg cgccggcatc gcaagctcct 3480 gtttggatgg ctgagccggg tagtcctttc gcggatttcc tgtctccagg ctccatgaat 3540 tcacacaatg tggaagctaa cgttgcttat tcgtatggtt tgaccacggc cgatgacgtt 3600 acaactctag accgtcgcta cactgcccaa ttatggttcg atgcagcacg tcaagttccc 3660 aagcgttcgc taatggttaa ttacgtgtct cctttccctg accgtagaga gtttagttca 3720 ctacaagatt attcaatcat agtctgggaa aaagaaaatg cttatgccgg aatgtcacta 3780 gtccctgtag acttttcacc agttagtatc gccgattaca agccggcggc taacttgact 3840 ttcccgtcgc tcactcgtcc ttccgccgtc gatacgagtg atattgcgaa gaatccgcgt 3900 gtggctagtt ctaaacgggc tccacgcgct gctgcttctg atatcctatc gcggttaaag 3960 gaatttaact cccctgcacc cactccccct tctccagggc tttctcaacg agaaccggct 4020 gcgcaacttt cctacgaggc aaaatacccc gtcgaggaga gtcaagtccc agcggatttt 4080 cgattctacc aaccagtggt tgaggaggac cgagttcatg tagagccagc ggatgcccct 4140 gatgcttatg atcgcttatc taagcaacag ctcaaacttg ccatcgagaa caacatgcaa 4200 ctactagcta aaatccaaaa ttcgcctatt ttgggagaat tagacttaga tgcagagcgt 4260 aagcgccgtg aggattttca aaaggttgag tctgcgcgta atgagcggat acaacgccgg 4320 tctagttttg tgcctttcgg tccaacacga ccccgacctg tacttacccc gcgagcccct 4380 gccgctaaac gcccgcaagt ccacggtaaa ctcccaccct ctgaagtgaa gcatgctccc 4440 gtcgagatta atgatgctgc agccgagcaa gtccaacgcc aaattcccca attgggcaga 4500 cctgtttcgc ctcgcactat cacggatcct ttcgctgctc taaaagccga taaagccaac 4560 cccggtacat actatcagaa gtcatcggag gatcttgctt tcgacgcttt aggcaaagag 4620 caattaccac aagcaaactt tgggcatact ggcgcggacg ttagcgtgca ggatgggata 4680 gcaactgact cactagcgaa aaactagtgt ggaacgttgc ttactaccgt tctgcgcgca 4740 acgttcacgc cagtatgctg tcagcttatg agttgctttc taagcattct caaggagcca 4800 agagagtagt cgcaggcctt accgacagta tgtcggctag cacatataaa atgagcggta 4860 caacgtaccc cggctgggat ttttcacgct tatactctaa gtacaattta tctacaccgc 4920 caaattctta tgaagctgct gccgtagcca gtgtactgct taaccccaga ccggatgcgc 4980 tgaacttggg catttcccca atctatgcta ctaatgatct gtacgctact ccttcaccag 5040 ttaaaccggg tattggcagt gcatggttaa ctgactttag caacacgcgt ttgcacgagc 5100 tacaacggga acgtttccat caaagtgatt tcattcatcc tagcttaaaa gacttctgtt 5160 tgtttgcaaa ttatggggaa tcaaagacgg cctcctgtgc aactcgcgtg ctacagttgc 5220 tcggttgtgc ttatccttta gtggattcgc accatctagc actagctaaa caatctctac 5280 gactcggaga cccgaacaag ttaggtatgg agcaacccgc gctagcaaat tacttgatag 5340 cagcttggtc gccgcattca atggtttttg atgattcaaa tgcaattgaa ggtgttgacg 5400 aagaagtgta tgctcgatta cacgctactt ttccattggc tccgatatta gtgtgcttac 5460 acgatggcca cgttacatac gccattcgtc gtaagttcct ctacgcagag ctcactaatt 5520 accgagctgc ataccaaaac gccagtccac acttaagcgc gcacgaaaaa gagttactca 5580 ctgccagtta tccaaagaac attggccgtg caggtggtag agtacatcta acactcgaga 5640 tgttgctcaa aactcccttg gaacccgcgc aacgtgcctt gttgttaggg tttcttaaac 5700 acagaaatgc gggtaatgac tttgagcaag tgtttataac taccgtagct ttagtaccct 5760 tcctggaagg cccagctgga cgtgatttga cgttgttttt cttacgaaat atgccggtaa 5820 tatgttcact ctctacgaat caagtcgcaa aatggttgaa agccgcacat gcccatgctc 5880 gcatttttca atgtcttcct ggcttagcgt tacctgcaat taccattcaa gagatcagga 5940 tgtatggcga cttgatttac ggcttagact ctctagtcgg tcgctcagag ttgatgaagc 6000 tggatttcac ggctgaactc tttatgcgta ctgctgaccc tattagacgc gcggttccta 6060 cgctaactcg cacttcgcta ggttatgagt taactttgag tgaagaactt tatgagacat 6120 acgaggacag ggcaatcaat acaactttta gagaagtgct tcctgagaag ttaaacttag 6180 agagttttga agcttggtac gcacggcgta tgttctgggg tgcttcaggt ggtgctcccg 6240 gggctaaaat aacatggtct gatcgtgaag ggggagataa gctcagattg aataaacgag 6300 gagctctgct tgctatacca gccatgcatt ttacgaagat acttgagcgt gctgtttcac 6360 cagtactctg gtcagtcaaa gccttaaaat ttgaaccagg caaactgcgt tccatactca 6420 acaccagcat ggaacactac gttatgcagg catatttact agaccacttc gatgcaaatg 6480 ttaacagcgg tacttggtat gcgattgcta atgcaggtgc agctcgttta gccgcccacg 6540 cacgaaggct agaatcgtta aggcattcag ttggttttat gtgggatttt gctga 6595 //