ID GU078661; SV 1; linear; genomic RNA; STD; VRL; 7198 BP. XX AC GU078661; XX DT 16-MAR-2010 (Rel. 104, Created) DT 27-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Merino Walk virus Z protein and L genes, complete cds. XX KW . XX OS Mammarenavirus merinoense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7198 RX DOI; 10.1099/vir.0.017798-0. RX PUBMED; 20071489. RA Palacios G., Savji N., Hui J., Travassos da Rosa A., Popov V., Briese T., RA Tesh R., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Merino Walk virus, a novel RT arenavirus isolated in South Africa"; RL J. Gen. Virol. 91(Pt 5):1315-1324(2010). XX RN [2] RP 1-7198 RA Palacios G., Savji N., Hui J., Travassos da Roas A., Popov V., Briese T., RA Tesh R., Lipkin W.I.; RT ; RL Submitted (06-OCT-2009) to the INSDC. RL Center for Infection and Immunity, 722 West 168th Street 18th Floor, New RL York City, NY 10032, USA XX DR MD5; ef9d07af477ef654fb755a71217eb57f. DR EuropePMC; PMC2888150; 20071489. DR EuropePMC; PMC3310648; 22000372. DR EuropePMC; PMC3557881; 23171649. XX FH Key Location/Qualifiers FH FT source 1..7198 FT /organism="Mammarenavirus merinoense" FT /segment="L" FT /host="Myotomys unisulcatus (bush Karoo rat)" FT /isolate="Merino Walk" FT /mol_type="genomic RNA" FT /country="South Africa:Merino Walk, Eastern Cape" FT /collection_date="1985" FT /db_xref="taxon:3052319" FT CDS 100..369 FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:D4N7Z8" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:D4N7Z8" FT /protein_id="ADD63339.1" FT /translation="MGSKTSKISNETDPYKDERVEMIPDASHLGPLFCKSCWFENKGLI FT ACHDHYLCHKCLTVLLTVSERCPLCKHPLPTKVRLSTLPTCPAE" FT CDS complement(492..7175) FT /codon_start=1 FT /product="L" FT /db_xref="GOA:D4N7Z9" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:D4N7Z9" FT /protein_id="ADD63340.1" FT /translation="MEERVSEIKHLVCTYLREDVRISRQRLTLLSQSEPKFILIEGLKL FT LSLCIEIDSCEQNGCNHNTDNKSVEVILLENKILCPGLPFVVPDGYKLIGSTLILLECF FT VRNNTANFEVKYSEDLTKLSALKNDLLNIGVKMIPLVDGRVNYYTSLMPEWVCDRLKYL FT LTTLLEYSQESTALFEESEYARLVESLTNTASRSSGIDSINVLKDCRAQHHQDILSICH FT EGINNMMTELEIKTLLEKEYNVFHNKLQSGKLEKRIIRTDREKLLREFGDLYEKEGLPP FT TDDVWELIREGISSSPILRFVYAKFENQESKESIYNQSDTSNCLPLNVIRLLNKIKSLK FT VFNTRRKFMLMLDTIVLLSYIKHGDNTYPIECWLGNSFLSVNDRLVSLNATKEDLMKWL FT KRRTAKTAVATENEMTRLNTILHELIGKVMLKISKALKSVNLSFETYFVSPDFYHSVTL FT EQIEDFKMEGVQPSMYYRKLESTDYSYKLEEFSVDTASDFLMLSSLSLGLINSMKTSST FT AKLRQNEVGKNRYDIVHCKESYYQTLKTPKGTFSLLYQKTGEGSKCYSINSSLLGHVSS FT FYADPKRYFVPIFSHNILSEMITTMMSWIIESGEVTQNLKEINAVLKFIVVLILSHPTK FT RAQKLLQNLRYFIMAYSSEYHLTSLLDKLKETLITPIEYVLFRLLRCLLRLLLVDTKKT FT VFSNVFKFILNTSYLCHFITKETPDRLTDQIKCFEKFLEPKIKFGSVNVNSKDVPSEEE FT LLDTITLGEKFLNKSTCKDEKFEFGVPGVSRELFSCMLSAFNQGLLYEQSETLSKFKDP FT LMVSGCATALDLASNKSVVVNKYEQGQRVLDYNFNKIVSNAVCEISEVFHRKGRHCLLK FT SDYDYKVQKIISRLVLGGGDKKGSLQKNKRESDAEWSDVSDVFDSQQSDYYQRIKDAVD FT DVVSRYGLDASNQATKEVKPCLSDLFKANIDKLQYQLILSEITRHPVEEFDFTLFDDHF FT YQNICTSLYSDNEISSKYFLRESSSLVSIKDMSKALCKKFLDDEQYFSCFKLILLQMHA FT DKMVGRFSHYKRKTINYKFDMEEFQKGVRLSERESNSEAISKALSLNNFTSSALKNLCF FT YSEESPQSYNSVSPDTGRLKFALSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEAFTNQ FT FKGSCLNNEKEFENAIISMKLNVSLANLSYSMDHSKWGPMMCPLLFIACLQNIKLAPSM FT GLDCNSSKEYITTLLSWHIHKIVEIPFNVVNAMMKSYLKRGLGLMKNSSITETEAFFFS FT SFDSNIIPSHISSVLDMGQGILHNTSDFYGLISERFINYCLRLIFPDTIESYTSSDDQI FT TLFGPSISKLAEDEDELVEVILNFHYYLSDQLNKFVSPKSSIGRFVAEFKSRFFVWGEE FT VPLLTKFVAASLHNIKCKEPHQLSETIDTIIDQCVANGVPLKLCNLIQLRVIRLLEYSQ FT YPIDPFLLNVHSDAKDWVDGNRGYRIMRNIERIDPEGTKLIRSIMRKLYNQLKQGKLHE FT EFTASFLSGDIYQNLYKICSMFGVEVGNTDLFSIGWLNLSACMPLRMVLRQKVLYPGIV FT NVEDEKLPTIVKTLQSKLSQHFTKGAQKLLSESINRSAFQSSIASGFVGLCKTIGSKCV FT RDSDRGTHYIKSVLNCLKKVEGVVPLTIEGMQVWKLNTDLKSIDDCWVVQLLRPILWDY FT FCIGLSTALEIGPWVLGEPKIKTVSKVIKFRCCDYFPTRPSSTRILEDRVNYNHIIHSI FT RRLYPDVFEKYLLPFMSDLAATKMKWSPRIKFLDLCVVLDVNCEALSLVSHVVKWKREE FT LYTVLSSDLAVMHERQNTTLVDQRVVCSEDICKNFLKQLFFESYLRSFVATSRTLGSFS FT WFPHRTSLPESEGLKMLGPFATFVEKVIYKGIERPMYRYDLFMGFSHLTYVIENPVFNL FT SQLIASGLTETGVYESLGAFWDALKGLKPGSIEILVTIRFRIKSQGESYAQTFNLILSF FT RGSIAEGNRFIPSSLGVQYSGQTDDKYLMDCWNLVKADETLKIGEAHWFISMSNVSDYF FT VERVDGDSVLVCKVVLTKELMSVLKEDMVRVGPEWEYEPIVVRQGSLWEGEHRMIDIVV FT DINDDDFRVFMDELLDDHFDIFIKSLHNIIKDRLRSKRSFESLDMLGVLSSKDGVDAIG FT IINQCFQGIEGWCEFKTHKLCYSNSLGKVMVACSNGSKRLRGVQCEELGWSPGVEDID" XX SQ Sequence 7198 BP; 2178 A; 1610 C; 1171 G; 2239 T; 0 other; taggctatag tgaatatctt tctttgtgtc tcagtgggtg aactctcatc gtttcagcca 60 caccgaggca aaaaccaggc ctcaacccaa ccccaaaaaa tgggctctaa aacctccaaa 120 atcagcaacg aaaccgaccc ctacaaagat gaaagggtgg aaatgattcc agatgcatca 180 cacctaggtc cactattttg taaaagctgt tggtttgaaa acaaagggct gattgcatgt 240 cacgatcatt atctctgcca caagtgtctg accgttttat taactgtcag tgagagatgt 300 cctctctgta aacatcccct gccaaccaag gtcaggctga gcacactacc aacttgtcca 360 gctgagtgag tcaaagttcc cccgcacagt caaccgatct ccatcccaaa caagtcacct 420 ccctcccccc ccggggggac cccccgccgg gtgccccccc gggggagcag tgaaggacag 480 gtcaaagagc cctaatcaat gtcttccacc cctggagacc aacccaactc ttcacactgg 540 acacccctca accttttgct tccgttagaa caggcaacca tcaccttccc caaactgtta 600 ctatagcaca acttgtgtgt tttaaactca caccagcctt ctataccttg gaagcactgg 660 tttatgatgc caattgcatc aacaccatct ttggagctca gaacacccaa catgtccaag 720 ctctcaaaag accttttact tctaagtcta tctttaataa tgttatgtag cgacttaata 780 aatatatcaa agtgatcatc caacagttca tccataaaaa ccctgaagtc atcatcattg 840 atatcaacaa caatgtcaat cattctatgc tctccttccc atagggaacc ctgtcgaaca 900 acaattggct catactccca ctcaggacct accctcacca tgtcctcttt cagaacactc 960 atcaattctt tggtcagcac aactttgcaa accaaaactg aatccccatc tactcgctcc 1020 acaaaataat cagaaacatt agacattgat atgaaccagt gggcctctcc tatttttaag 1080 gtttcatcag ccttgaccaa gttccaacaa tccatcaagt acttgtcgtc tgtctgacca 1140 ctgtactgga ccccaagtga actaggaata aatctgttgc cctccgcaat tgaccctctg 1200 aatgataaga tcaagttaaa cgtttgagca taagattccc cttgactttt aattctaaat 1260 cgtatagtta ccagaatttc aatggagcca ggcttcagtc ccttcagtgc atcccaaaat 1320 gcgccaagac tctcatacac cccagtctcc gtcagtccag atgcaatcaa ttgactgaga 1380 ttaaacacag gattctctat gacataagtc aagtgtgaaa accccatgaa caagtcatat 1440 ctgtacatag gtctttcaat ccccttgtaa ataaccttct caacaaatgt tgcaaaagga 1500 cccaacatct taagtccctc actctctggc aaagaggtcc tatgaggaaa ccaactgaag 1560 gaacctaatg ttctggaagt tgcaacaaag gatctcaaat aagactcaaa gaataactgt 1620 ttcaagaaat ttttgcaaat gtcctccgag catactaccc tttggtccac aagagttgta 1680 ttctgtcttt catgcataac tgctaggtca ctactcaaaa cagtgtacaa ctcttctctt 1740 ttccacttca caacgtgtga cactaatgag agagcctcac aattcacatc taggactaca 1800 cacaaatcta aaaattttat ccttggggac catttcatct ttgtagctgc cagatcactc 1860 ataaatggta acaaatattt ttcaaagaca tcagggtaaa gtcttcttat agaatgtata 1920 atatgattgt agttgactct atcctcaaga attctggtgc tagaaggtct agttgggaag 1980 taatcacaac atctaaattt tataactttg ctgacagttt taatctttgg ctcacccaac 2040 acccaaggcc caatttccaa agctgttgaa agcccgatac agaaataatc ccaaagtatt 2100 ggtctcagaa gttgtacaac ccaacagtca tcaattgatt ttagatctgt gtttaatttc 2160 caaacctgca tcccctctat tgttaatgga acaacaccct caaccttttt cagacagttg 2220 agaaccgact ttatataatg agttcccctg tcactatctc taacacattt gcttcctatt 2280 gttttacaca atccaacaaa accagatgca attgaacttt ggaaagcact cctatttata 2340 gactctgaga gcaacttctg agcaccttta gtaaaatgtt gagacaattt gctctgtaat 2400 gttttaacaa ttgtagggag tttctcatcc tccacattga cgattccagg atacaatacc 2460 ttctgcctca ggaccattct caaaggcata caggctgaca agttcaacca gcctattgag 2520 aacaggtctg tatttcccac ttcaacacca aacatggagc aaatcttgta caaattctga 2580 tagatgtccc ctgaaaggaa tgaggcggtg aactcctcat gtagtttgcc ctgttttaat 2640 tgattataca atttcctcat tatggatcta atcaatttgg tgccttctgg gtcaatcctc 2700 tctatattcc tcataattct ataacctcta tttccatcca cccagtcttt agcatcacta 2760 tggacattaa gtagaaacgg gtcaataggg tactgagagt attccagcaa tctaatcact 2820 ctcaactgaa tcaagttaca aagcttgagt ggaacaccat ttgcaacaca ctgatcaatg 2880 atagtgtcta tagtttctga caattggtga ggctctttac attttatgtt gtgtaaagag 2940 gcagcaacaa acttagtgag caaaggtact tcctcacccc atacaaagaa ccttgacttg 3000 aactcagcaa caaaccttcc aatagaactc ttaggactaa caaatttgtt gagctgatca 3060 ctgagataat aatggaaatt taaaataacc tccacaagtt catcttcatc ctctgccaat 3120 tttgatatag agggtccaaa aagggtgatt tgatcatcac ttgatgtgta tgactcaatt 3180 gtgtctggaa agatcaacct caaacaataa tttatgaacc tctctgaaat caatccatag 3240 aaatcagatg tgttgtgcag gataccttgc cccatatcta gtacagaaga tatatgagac 3300 ggtatgatat tggagtcaaa ggatgagaag aagaatgctt ccgtctcagt tatactagag 3360 tttttcatga ggcctagacc tcttttcaga tatgacttca tcattgcgtt gactacattg 3420 aatggtattt caacaatttt atgaatgtgc catgacaaca atgttgtgat gtattcctta 3480 cttgaattgc aatcaagccc cattgatggt gctagtttaa tgttttgtaa acaagcaata 3540 aaaagcaatg gacacatcat aggtccccac ttactatgat ccatactata acttaaattg 3600 gccaaagaaa cattgagttt catggagatt attgcattct caaattcttt ttcattattt 3660 aggcaactcc ctttaaactg attggtaaag gcctcaaagt aatcttcgat caaccttgtg 3720 aacatctttg ttcgaaggtc cccgatatac aactctctat taccacctac ttgttcttta 3780 taggataatg cgaattttaa gcgacctgtg tcaggtgata ctgaattgta agattgtggc 3840 gattcctctg aataaaaaca gagattttta agtgcagagc ttgtgaagtt attaagtgac 3900 aaggccttgc taatggcttc agagttgctt tcacgctcac tcagtcgaac acctttctga 3960 aactcttcca tatcaaattt gtaattgatc gtctttcttt tatagtgtga aaatctgcct 4020 accatcttgt ctgcatgcat ctgcaacaag attaatttaa aacatgagaa atactgctca 4080 tcatcaagaa acttcttaca taatgctttt gacatatcct taatggacac taaagaacta 4140 ctctccctta aaaaatattt acttgaaatc tcattatcag agtacaatga agtgcagatg 4200 ttctggtaaa aatgatcatc aaaaagtgta aaatcaaact cttctacagg gtgccttgtg 4260 atttcagata agattaactg atattgtagt ttgtcaatat ttgccttgaa caaatctgac 4320 aaacaaggct ttacttcctt ggttgcttga ttactagcat ccaaaccata tcgcgacaca 4380 acgtcatcca cagcgtcctt gatcctttga taataatctg attgttggct atcaaagacg 4440 tcagaaacat ctgaccattc tgcatctgat tctcttttgt tcttttgcag acttcctttt 4500 ttgtccccac cacctaagac cagcctggaa attattttct gaaccttata atcatagtca 4560 ctctttagaa ggcaatgtct tccttttcta tggaacacct cacttatctc acagactgca 4620 ttgctaacaa tcttattaaa gttgtagtct aaaactcttt gaccttgttc gtatttgtta 4680 acaacaacgc tcttgttact tgctaggtca agtgctgttg cgcaaccact caccatcaat 4740 gggtctttaa actttgataa tgtttcagat tgttcataaa gtagaccctg gttgaaagcc 4800 gagagcatgc aagagaataa ttctctagaa acaccgggga ctccaaattc aaatttttca 4860 tctttacatg ttgatttatt gagaaatttt tcccctaagg ttatcgtatc caataattct 4920 tcctcactcg gaacatcctt agaattcaca ttaacagacc caaatttgat cttaggttca 4980 aggaacttct caaaacactt aatttgatcc gtcagtctgt ctggagtttc tttggtgatg 5040 aagtggcaca aatatgatgt attcaaaatg aatttgaaaa catttgagaa cactgttttc 5100 ttagtgtcaa ccaaaagcag tcttaacaaa catcttaaca atctaaagag cacatattca 5160 attggggtta tcaatgtttc cttcaacttg tccaatagag atgttaaatg atattcagaa 5220 gaataagcca tgataaaata tctcaaattt tgtaggagtt tttgagctct tttagttggg 5280 tgacttaata tgagcactac aatgaatttc aaaactgcat taatctcttt caaattctga 5340 gtgacttcac cgctttcaat tatccaactc atcattgttg ttatcatttc tgacaaaatg 5400 ttatgcgaga atataggcac aaagtacctt tttgggtctg cataaaatga tgacacatgg 5460 cccagtaatg aactatttat tgagtaacat ttggaacctt caccagtctt ttgatacaat 5520 aatgagaagg tgccctttgg ggtttttaaa gtttgataat atgattcttt gcaatgcact 5580 atgtcatatc tatttttacc cacttcattt tgcctgagct ttgctgttga cgatgtcttc 5640 attgagttga tgagtcctag ggacaaagat gacaacatta aaaagtcact tgctgtgtcc 5700 actgaaaatt cttccaattt gtatgaataa tcagtcgatt cgagttttct atagtacatg 5760 gatggttgca caccctccat tttaaagtcc tcaatttgct ccaatgtaac agagtgataa 5820 aaatcaggtg aaacaaaata tgtctcaaag gatagattta ctgatttcaa tgcctttgag 5880 atcttcagca taactttccc aataagctca tgtaatatag tgttcaatct agtcatttca 5940 ttctcagtag ccacggctgt cttcgcagtt cgccttttga gccacttcat caggtcctcc 6000 ttagtggcgt tgaggctgac taatctatca ttaacactca agaaagagtt cccaagccaa 6060 cattcaatgg ggtaagtgtt gtctccatgt ttgatatatg acaacagcac gatggtatcc 6120 aacatcagca tgaatttcct cctagtatta aagactttca agctcttgat cttattcaac 6180 agcctgatta catttaacgg caggcagttg cttgtatcac tttggttgta aatagactct 6240 ttagactctt ggttttcaaa tttagcatag acaaacctca atattgggga tgaacttatc 6300 ccttctctta tcaattccca cacatcgtct gtaggaggga gaccttcctt ctcataaagg 6360 tccccaaact ctcttaatag tttttctctg tctgtcctaa tgatcctttt ctctaattta 6420 ccactttgta atttattgtg gaacacattg tattccttct ctaacaaggt ttttatttcc 6480 aattcagtca tcatgttgtt gataccttcg tgacatattg acaaaatgtc ctgatggtgt 6540 tgtgctctac agtcttttaa aacattgata ctatcaatac ctgaggatct tgatgctgtg 6600 tttgtcagtg attcaaccaa tctagcatat tctgactcct caaacagtgc agtggactct 6660 tgagaatact ctaatagtgt tgtcaacaaa tattttaacc tgtcgcagac ccattcaggc 6720 atcaaacttg tgtaatagtt caccctacca tctactaaag gaatcatttt gacacctatg 6780 tttagtaagt cattctttaa tgcagacaat ttagtgagat cttctgaata tttcacttca 6840 aagtttgctg tattattacg gacaaagcat tccaacaata ttaatgtgct tccaatcaat 6900 ttgtatccat caggaacaac aaaaggtaat cccgggcaga ggatcttgtt ctctaatagg 6960 atgacttcaa cagatttgtt gtccgtattg tgattacagc cattctgttc gcacgagtca 7020 atttctatac aaagagatag aagtttaaga ccttctatca agataaactt cggttcactc 7080 tgtgacaaaa gtgtcaaccg ctgtctgcta attcgaacat cttctctgag ataagtgcaa 7140 accaaatgtt tgatctcact taccctctct tccatggcgc aatccttaaa gcctaggt 7198 //