ID GU078660; SV 1; linear; genomic RNA; STD; VRL; 3364 BP. XX AC GU078660; XX DT 16-MAR-2010 (Rel. 104, Created) DT 27-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Merino Walk virus GP (GP) and NP (NP) genes, complete cds. XX KW . XX OS Mammarenavirus merinoense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3364 RX DOI; 10.1099/vir.0.017798-0. RX PUBMED; 20071489. RA Palacios G., Savji N., Hui J., Travassos da Rosa A., Popov V., Briese T., RA Tesh R., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Merino Walk virus, a novel RT arenavirus isolated in South Africa"; RL J. Gen. Virol. 91(Pt 5):1315-1324(2010). XX RN [2] RP 1-3364 RA Palacios G., Savji N., Hui J., Travassos da Roas A., Popov V., Briese T., RA Tesh R., Lipkin W.I.; RT ; RL Submitted (06-OCT-2009) to the INSDC. RL Center for Infection and Immunity, 722 West 168th Street 18th Floor, New RL York City, NY 10032, USA XX DR MD5; b3e1dde8822faa88c22720055175d248. DR EuropePMC; PMC2888150; 20071489. DR EuropePMC; PMC3310648; 22000372. XX FH Key Location/Qualifiers FH FT source 1..3364 FT /organism="Mammarenavirus merinoense" FT /segment="S" FT /host="Myotomys unisulcatus (bush Karoo rat)" FT /isolate="Merino Walk" FT /mol_type="genomic RNA" FT /country="South Africa:Merino Walk, Eastern Cape" FT /collection_date="1985" FT /db_xref="taxon:3052319" FT gene 53..1546 FT /gene="GP" FT CDS 53..1546 FT /codon_start=1 FT /gene="GP" FT /product="GP" FT /db_xref="GOA:D4N7Z6" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/TrEMBL:D4N7Z6" FT /protein_id="ADD63337.1" FT /translation="MGQIVTFFQEVPHVIEEVMNVVLITLSILAILKGLYNLLTCGIGN FT LIIFLLLAGRSCEATDGSLYKGEFRLQNITWNSASLNETMPLSCSKNNSHHYIYLKNET FT GLEVTLTNTSILNHKFCNLSDAHKKALYDHSLMVIVTQFHLTIPNFGQWEAMSCDFNGG FT NITIQYNLSHSTAVKAANHCGTLANGILETFFKMFWGRDISNAFQIPDNGVLRNCFKTS FT YKYLIIQNTSWADHCVMSVPHPIGPISVLNSQVRSIYLSRRLKGTFSWSLSDSEGNSMP FT GGYCLEKWMLIAAEMKCFGNTAIAKCNLNHDSEFCDMLRLFDYNKQAIERLKGELEQTL FT NTFRKAVNALINDQLIMRNHLKDLMGIPYCNYTKFWYLNSTKTGVVSLPKCWLVSNGSY FT LNVTHFSNDIEQEADNMITEMLRKEYIERQGKTPLGLVDIFLFTTSFYLVTVFLHLVKF FT PTHRHIVGQGCPKPHRLTSMAICSCGVYGQPGLPVKWKR" FT gene complement(1619..3304) FT /gene="NP" FT CDS complement(1619..3304) FT /codon_start=1 FT /gene="NP" FT /product="NP" FT /db_xref="GOA:D4N7Z7" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:D4N7Z7" FT /protein_id="ADD63338.1" FT /translation="MSNSKEIKSFQWTVALRRELSQFGASVKSQVLRDAQMLLNSLDFS FT EVVNVQRMMRKEKRDDSDLKRLRDLNQAVNNLVELKSIQQKNVLKVGKLSADDLMTLAA FT DIEKLKAKVIRTERPLSAGVYMGNLTGQQLEQRAKLLKMVGMSGARPQGNGIVRVWDLK FT DSSLLNNQFGTMPSLTMACMAKQGQVQLSDVVHALSDLGLIYTAKYPNMTDLEKLSETH FT PILNIIQEQQSSINISGYNFSLSAAVKAGAVMLDGGNMLESLKVTPQNVESILQSILKV FT KRQYGMFITESPGERNPYENILYKVCLSGNGWPYISSRTAIQGRAWDNTIVDLGAGGQS FT TKSNSPEKRPPGTPPVGLSFSQMMLLKDLMSGLDPNAKTWIDIEGRANDPVEVALYQPS FT NGQVVHFYREPVDIKQFKQDSKFSHGIDITDLFPSQPGLTSAVIEHLPQNMVLTCQGSE FT DIMDLLKSQGRRDIKTIDVSLSKEASRQFEDKVWDLHKGLCKLHTGVVVVKTKKGKMEI FT TPHCALMDCLMFEAATNGGTVPTKVNPILPNDLIFRTSTKKVTL" XX SQ Sequence 3364 BP; 935 A; 747 C; 676 G; 1006 T; 0 other; cgcaccgggg atcctaggca tttttggaag cgcattacta tttggctcag aaatggggca 60 gatagtgact tttttccaag aagtacccca tgtgattgaa gaggtgatga atgtggttct 120 gataacctta agtattcttg caatattgaa gggcttgtac aatctattga cctgtggcat 180 aggtaaccta ataatcttcc tgctccttgc agggagatca tgtgaagcta ccgatggaag 240 cctctataaa ggggaattta ggctccaaaa cataacatgg aactcagcat cacttaatga 300 aacaatgcct ctttcctgtt caaaaaacaa cagccatcat tacatatatc ttaagaacga 360 gacaggactg gaagtgacac tcacaaacac ttctatactc aaccataagt tctgtaacct 420 cagtgatgct cacaagaagg cattgtatga tcatagttta atggtaattg tgacacaatt 480 tcaccttact ataccaaatt ttggccaatg ggaggcaatg tcctgcgact ttaatggcgg 540 caatataaca atacagtaca atttgtcaca ttctacagcc gttaaagcag caaaccactg 600 cgggacttta gccaatggga tactagaaac atttttcaag atgttttggg gtagagacat 660 cagtaatgca tttcagatac ctgacaatgg agttttgaga aattgtttca aaacatccta 720 taaatattta ataatacaga acacctcttg ggctgaccat tgtgtcatgt cagtacccca 780 tcccataggt cccatttctg tgttaaattc acaggtacgt tctatttatc tctccaggag 840 gctgaaaggg actttttcat ggtctctaag cgactcagaa ggtaactcaa tgcctggagg 900 gtactgtctt gaaaaatgga tgttaattgc agcagaaatg aagtgctttg gcaacacagc 960 aatagcaaaa tgtaatttaa accatgattc agaattttgt gacatgctga gactattcga 1020 ttacaataag caggctattg aaagactaaa aggagaactt gaacaaacac ttaacacctt 1080 tagaaaagct gtcaatgcat tgatcaatga ccaattaatc atgagaaacc atctaaagga 1140 tttaatgggg ataccctact gtaactacac aaaattttgg tatctaaaca gcacaaaaac 1200 tggtgttgtc tcactaccca aatgctggtt ggtctcaaac ggaagctatc ttaatgtcac 1260 tcatttcagc aatgatatcg agcaggaggc tgacaacatg ataacagaaa tgttaaggaa 1320 ggagtacatt gagagacagg ggaaaacacc acttgggctt gtcgacatct ttttgttcac 1380 cacaagtttc tatctggtga cagtgttcct acacttggtt aaatttccga cacatcgaca 1440 catcgttggt caaggatgtc caaagccaca tcgtttaaca tccatggcca tttgcagctg 1500 tggggtgtat ggtcaacctg gcctgccagt caaatggaaa cgctaacctg ccttccccag 1560 caggcccccg tgacccacca cctttcggtg gtgggtcacg ggggcactcc ttactggttt 1620 agagtgtcac tttctttgtg cttgttctaa aaatcaagtc atttggtaga atggggttga 1680 ctttggttgg cacggtgcca ccatttgtgg ctgcctcgaa cattaagcag tccatcaagg 1740 cacagtgagg tgttatctcc attttcccct tctttgtttt caccacaaca acacctgtgt 1800 gaagtttgca caacccttta tgaagatccc aaactttatc ctcaaactgt ctggatgctt 1860 ctttagatag agagacgtca atggttttta tatctctcct accttgactt ttcagcagat 1920 ccattatgtc ttctgaccct tgacaagtca agaccatatt ttgtggtaaa tgttcaatca 1980 ctgcacttgt taaaccaggt tgtgatggaa atagatcagt tatgtcaata ccatgactga 2040 attttgagtc ttgtttaaac tgtttaatgt caactggctc tctataaaag tgaaccactt 2100 gaccatttga tggttgatac agggccactt ctacagggtc attcgctctc ccttctatgt 2160 caatccatgt ttttgcattg ggatcaagac ctgacattag gtccttaaga agcatcattt 2220 gtgaaaaaga cagtccaact ggtggggtac cagggggtct tttctcagga gagtttgatt 2280 tggtagattg gcctccggca cccagatcca caatagtgtt gtcccaagcc ctgccttgta 2340 tagctgttct cgatgatatg tagggccatc cattacctga aagacacacc ttgtataaga 2400 tgttctcata agggttcctt tctcctggag actctgtgat aaacatacca tactgcctct 2460 tcactttcag tattgactgg aggattgact caacattctg tggggtgact ttcagacttt 2520 ccagcatgtt ccccccatca agcatgactg caccagcctt cactgctgca ctcaaactaa 2580 aattatagcc tgagatgttg atagatgatt gctgttcctg aatgatgttc aagattgggt 2640 gagtctcact caacttctcc aagtccgtca tgttaggata cttagcagtg tagatcagcc 2700 ctaaatcact gagggcatga acaacatcag atagttgaac ctggccttgt tttgccatgc 2760 aagccattgt caggctaggc atagtcccga attgattatt taaaagagat gaatccttta 2820 agtcccacac ccgtacaatg ccattgcctt gaggtcttgc cccactcatt ccaaccatct 2880 ttagcagttt tgccctctgt tctaattgct gcccggtcag gttgcccata tacacacctg 2940 cacttaaagg tctctcagtt cggattacct ttgctttgag tttctcaatg tcagcagcca 3000 gggtcatcag gtcatcagct gacaatttcc ccacttttag gacatttttc tgttggatgg 3060 atttcagttc aacaaggttg ttgacagctt ggttgagatc tctgagcctt ttcagatctg 3120 aatcatctct cttttccttt ctcatcatcc tttgaacatt caccacttca gagaagtcta 3180 aactgttcaa aagcatttga gcatctctta gtacctgtga cttcacactg gcaccaaact 3240 gagacaattc tctcctcaaa gcaactgtcc actgaaagga tttgatttcc tttgagttgg 3300 acatgtttgc caaagttttg caaagtggaa tttgcgctct tttaagccta ggatccactg 3360 tgcg 3364 //