ID GU076447; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC GU076447; XX DT 16-DEC-2010 (Rel. 107, Created) DT 16-DEC-2010 (Rel. 107, Last updated, Version 1) XX DE Tomato yellow leaf curl virus-[Shiraz:Iran] isolate TYLCV-IL[IR:Sh47:07], DE complete genome. XX KW . XX OS Tomato yellow leaf curl virus-[Shiraz:Iran] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2781 RX DOI; 10.1371/journal.ppat.1001164. RX PUBMED; 21060815. RA Lefeuvre P., Martin D.P., Harkins G., Lemey P., Gray A.J., Meredith S., RA Lakay F., Monjane A., Lett J.M., Varsani A., Heydarnejad J.; RT "The spread of tomato yellow leaf curl virus from the Middle East to the RT world"; RL PLoS Pathog. 6(10):E1001164-E1001164(2010). XX RN [2] RP 1-2781 RA Heydarnejad J., Varsani A.; RT ; RL Submitted (06-OCT-2009) to the INSDC. RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman RL Ave, Kerman, Kerman 7616914111, Iran XX DR MD5; d0b74e666d219925d888dd9d0985e3c3. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus-[Shiraz:Iran]" FT /host="Solanum lycopersicum" FT /isolate="TYLCV-IL[IR:Sh47:07]" FT /mol_type="genomic DNA" FT /country="Iran" FT /collection_date="2007" FT /db_xref="taxon:761711" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:E7BM45" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BM45" FT /protein_id="ADG37267.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1084 FT /gene="V1" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:E7BM58" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7BM58" FT /protein_id="ADG37268.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:E7BM59" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BM59" FT /protein_id="ADG37269.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPPTGRFLRVFSYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTLNVTESHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:E7BM60" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BM60" FT /protein_id="ADG37270.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAIFNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="C1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:E7BM67" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BM67" FT /protein_id="ADG37271.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT QELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFVDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT NSNLDRIFQEPPAPYISPFLSSSFNQVPDELEIWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDIQEENNKA" FT gene complement(2171..2470) FT /gene="C4" FT CDS complement(2171..2470) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BM68" FT /protein_id="ADG37272.1" FT /translation="MKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFRQLR FT AQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKRSIQAANPRPSIY" XX SQ Sequence 2781 BP; 771 A; 533 C; 614 G; 863 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcataatg tgggacccac ttctaaatga gtttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaagg tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtt tggatggatg aaaatataaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtc cgtgatagaa ggccctacgg aagcagccca atggattttg ggcaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaagaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgtatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgact ttctgttaca tttagtgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catagctaaa tactcttaag aaacgaccag tcggaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattaaaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attgttttct 1560 tcttggatat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg acttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcgatgat aatactatta 1980 ggtctccatg gccgcgcagc ggaagacatg acgttctctg acacccatat ttcaagttca 2040 tctggaactt gattaaaaga tgaagataaa aagggagaaa tataaggagc cggaggctcc 2100 tgaaaaattc tatctaaatt tgaatttaaa ttatgaaatt gtaaaatata atcctttggg 2160 gccttctctt tcaatatatt gagggcctcg gatttgctgc ctgaattgag cgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa cgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgcttg gagaggataa atcgaagaac 2400 cgttggttct tacattggta ctttccttcg aactggatga gaacatggag atgaggagac 2460 ccatcttcat gtagttcctg cgcaactcgt atgaatttct tgttagttgg tgtatttagg 2520 gcaagtaatt gggaaagtgc ttcttcttta gagagagaac aattaggata agtcaggaaa 2580 taatttttgg catatatttt aaatagacga ggcatagtga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tatttatacc tagacaccca atggctattt 2700 ggtaatttcg taaaagtaca atgtaagtaa aaaatcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //