ID GU071087; SV 1; linear; genomic RNA; STD; VRL; 5376 BP. XX AC GU071087; XX DT 01-OCT-2012 (Rel. 114, Created) DT 01-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Tomato chocolate virus isolate ToChV-G02 segment RNA2, complete sequence. XX KW . XX OS Tomato chocolate virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus; OC unclassified Torradovirus. XX RN [1] RP 1-5376 RA Dullemans A.M., Verbeek M., Maris P.C., van den Heuvel J.F.J.M., RA van der Vlugt R.A.A.; RT "Tomato chocolate virus: a new member of the genus Torradovirus"; RL Unpublished. XX RN [2] RP 1-5376 RA Dullemans A.M., Verbeek M., Maris P.C., van den Heuvel J.F.J.M., RA van der Vlugt R.A.A.; RT ; RL Submitted (08-OCT-2009) to the INSDC. RL Biointeractions and Plant Health BV., Plant Research International, P.O. RL Box 69, Wageningen NL-6708 AB, The Netherlands XX DR MD5; 24c7ff69cb2807606f31da9819e4c304. XX FH Key Location/Qualifiers FH FT source 1..5376 FT /organism="Tomato chocolate virus" FT /segment="RNA2" FT /host="Solanum lycopersicum L." FT /lab_host="Nicotiana hesperis 67A" FT /isolate="ToChV-G02" FT /mol_type="genomic RNA" FT /country="Guatemala" FT /collection_date="2007" FT /db_xref="taxon:626985" FT /culture_collection="DSM:22202" FT 5'UTR 1..181 FT CDS 182..751 FT /codon_start=1 FT /product="ORF1" FT /db_xref="UniProtKB/TrEMBL:J9PD86" FT /protein_id="ADI88517.1" FT /translation="MSFISRLNISEEEKAFHSQVSTADWVCSVDVGTGLINSNPTLDFK FT VTPKTGGSVSILSVSWENSYPQLVPGHYLLRSGNWPVSNVKLSGLLVHRSVKLETTRKL FT LEAQKVQILNQVQVEASTSGNTKGKGVADTLKSQEEEISKLKEELSRKEKELFEKDSEI FT TRLKLQVSNLPSNNDIFSGWAETPPQ" FT CDS 711..4289 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:J9PD66" FT /protein_id="ADI88518.1" FT /translation="MTSFLDGRRHPPSNKEQEAASERLMSQITAAVEEGNKNMLRKLGM FT GSYGLLRGSQDKQAMELFDPKDVGKITSLWTSFKQKFVESKEHANLFFHLYGVLFFMVP FT HVTGGEGRVKICLCSSNDPMNPVVQEKTLSLAGGAQAVLMSPSITLPFLERGPMFYYTL FT ECQGTQAQIPCSVVAIWKQKIDTRSAIYSQQETMSWAIEALNRPQFFQDRQEAAQYIAS FT VYSSGQSSQMALENRAFVGEQLGDTRMNVVSESTMPRSTSLRVPTLRVQSKRFSSLEIP FT NSALLQQLETREETVQDEDDGGLFPMKKACSPNHSIIWDNLNIDTFVDMEFPPDWTERT FT LAQQVQYVMFTKASKGCVIVPNHIAKRESHNINRETITPDNYESILKGYGITKVGSLSQ FT SNDWYSLTLKQRVINLVHQRDHQLYMAGDFTNPLPRFDCYDGLTLAERHMRNIRASFAT FT SESSQIRMAQTTVTAKSGVSNERNVQDSFVSKTAMESTSGEKSIHIDTSHSEEDVKPAD FT VIFDFGNDMEIGDALELEMQQPVCVASNEFFNAGVFEFVWEKSAHVAEQVMAIALPAAL FT FSQKKETSMGAQMLKYYDAALITYKIILYVSGVGAISGQLALVWDECNVLNRKKEFVNI FT ATLYASKHTLVSASQQNSAEFVFTPTGIGKFVPLDEGTGAMDLGSVRVFVTHPLSSATE FT LTGVPCHLHLQCKVLSTNILQPPRVIAQTQYGMKADQTYFKSFPTNQVLLHYNWNTTAV FT MGTTLVSIFSPSGIYESDGTLQPSLLGNIARNCKWWTGVCVFEICIEKTLFHSGSLAIG FT LGTLNTKMSSAHDIFNMPYVVCNLEMGRKFQFKCAISNWNGKNLLSTGRKSSLPRPNHY FT SHLRLFATVMKPLVSTSVHLDSVGVTVQLKRIEGLTLGGTVSVKPIYGHWTKGKSTVDF FT LFSEMNLEHRKEIEKLRRVNVEEYDKKGKDKPGKEGQVSVSIREKFTYGAVQYLCMGWK FT DEERLLVLPCAPWSIRFAHTSPVKEAITCPFIDWCTSFCYWSGSLQYSIVLHRVQASAD FT VGGILNVALDSSGYPFPAGMHAGSYVVSAGGGSKWDFSYGVSTNTFSFVVSDDEFFPRR FT HTRMREFSKSQSRIMSLQDRLGNLIINLPPKGLISSIEILIAPGPDFKLEIAQPPSANH FT EKFLGNMQTHTYLYTPDFSELRDFGG" FT 3'UTR 4290..5366 FT polyA_site 5366 XX SQ Sequence 5376 BP; 1556 A; 1038 C; 1232 G; 1550 T; 0 other; aaaagaattt ttatatatat ctgttatgta acccaagccg ttacgtggac caagtctccg 60 ctaccagata tttatctatc ttcttttaaa gttcgcagtg ataatactct tcaaactacg 120 actttggagt attacacaat tgtcacaaat ccaaaccatt taattcttat cttatcttca 180 catgtcattt atttctcgtt taaatatctc agaggaagaa aaagcatttc attcacaggt 240 tagtacagct gattgggttt gctcggttga tgttggtact ggactcatta atagtaatcc 300 cactttagat ttcaaggtca cacccaagac aggaggatca gtttcgatac tttctgtatc 360 ctgggaaaat tcttatcctc aactcgttcc aggtcattat ctgctgagat cgggcaattg 420 gccagttagc aacgttaaac tctcagggtt gttagttcac agatcagtaa aattagaaac 480 aaccaggaaa ttgttggagg cacaaaaagt tcagatattg aaccaagtgc aggtggaagc 540 ttctacatct ggcaacacca aaggaaaagg agttgctgat acactcaaat cacaagagga 600 ggagatatca aagctcaaag aggagttgtc aaggaaggag aaggaacttt ttgaaaagga 660 ctcagagata actaggctca aacttcaggt ttcaaatcta ccaagcaaca atgacatctt 720 ttctggatgg gcggagacac ccccccagta acaaggagca ggaagcagcg tcagagcgct 780 taatgtcaca aatcacagct gctgtcgagg aaggaaataa aaacatgctc aggaagctgg 840 gtatgggatc atatggattg cttcgaggct cccaagacaa acaagcaatg gagttgtttg 900 acccaaaaga tgttgggaaa ataacttctt tgtggactag ttttaaacaa aaatttgttg 960 agtcaaagga gcatgccaac ttattctttc atttatatgg ggtgttattt tttatggtac 1020 cacatgtaac aggaggagaa ggcagggtca aaatatgttt gtgctcgagc aatgatccaa 1080 tgaatcctgt ggtccaagag aagactttgt ctttggcagg tggggcacag gcagttttaa 1140 tgagtcccag catcacattg ccatttcttg aaagagggcc tatgttttat tacactctgg 1200 aatgccaagg tacacaagct caaattcctt gctcagttgt ggcaatctgg aagcaaaaaa 1260 tcgatactcg cagtgcaatc tattcacaac aagaaactat gtcgtgggct attgaagctc 1320 tcaatagacc acaatttttc caagatagac aagaggctgc acaatatatt gcatctgttt 1380 attcgagcgg gcaaagttca caaatggccc tggagaatag agccttcgtt ggtgagcaac 1440 ttggggatac acgcatgaat gtggttagtg agagtacaat gccaagaagt acttcattgc 1500 gggttcccac tctaagagtg cagagtaaac gattttcttc actggaaata cccaactctg 1560 ctttgttgca acagcttgag actagagagg aaactgtgca agatgaggat gatggcggtt 1620 tgtttcccat gaagaaagca tgcagtccca accacagcat aatttgggat aatttgaata 1680 ttgacacatt tgtggacatg gaatttccac ctgattggac cgagcgtaca cttgcccagc 1740 aagtgcaata tgttatgttc acgaaggcct caaagggttg tgtcattgtt ccaaatcaca 1800 ttgcaaaaag ggaatcccac aacatcaacc gtgagaccat aactccagac aattacgaaa 1860 gtatattgaa aggatatggc atcaccaaag ttggaagttt gtctcagagt aatgactggt 1920 attctttaac tctcaaacaa agggtcataa accttgtgca ccaacgtgat catcaattgt 1980 acatggcagg tgattttacc aatccattgc ccagatttga ttgttatgat ggtttgactt 2040 tggcagaaag acacatgaga aacatcagag ccagttttgc cacatctgag agcagccaaa 2100 ttagaatggc acagactact gttactgcta aaagtggtgt ttccaatgaa agaaatgtcc 2160 aggattcctt tgtgtccaaa acagcaatgg aaagcactag cggggaaaag tctattcata 2220 tagatacttc ccacagtgaa gaggatgtga aaccagccga tgtcattttt gacttcggta 2280 atgacatgga gattggggat gcattggaat tagaaatgca acagccagtg tgtgtggcta 2340 gtaatgaatt tttcaatgca ggagtctttg agtttgtgtg ggaaaagagt gcccatgtcg 2400 ctgaacaagt gatggcaata gctctgccag cagccttatt ttcccaaaag aaggagacat 2460 caatgggtgc tcagatgctt aagtattatg atgcagcgct cataacttat aaaataattt 2520 tatacgtttc tggtgttggt gccatatcag gtcagcttgc actggtgtgg gatgaatgca 2580 atgtgttgaa tcgcaagaag gaatttgtta acattgcaac gctctatgct agcaagcaca 2640 ctctggtgtc tgcatcccaa cagaacagtg ctgagtttgt ttttacgcca actggaattg 2700 ggaaatttgt acctcttgat gaaggtactg gagccatgga tcttggaagt gtgagggttt 2760 ttgttaccca tcccttgtcc agtgcgactg agctaacagg tgtaccttgt catctgcatc 2820 tacagtgcaa ggttttgtca actaacattt tgcagcctcc aagagtgata gcacaaacgc 2880 agtatggaat gaaggcagat cagacatact tcaaaagttt tccaactaat caggtactcc 2940 tccattataa ctggaatacc acggctgtca tgggaacaac tttggtgagc atcttttcac 3000 cgtctggaat ttatgaaagt gatggcacac tacaaccatc cttacttggc aacatagctc 3060 gcaattgcaa gtggtggact ggtgtatgtg tgtttgagat atgcattgaa aagacccttt 3120 tccattctgg aagtttggct ataggacttg gcaccctgaa cacaaagatg tcaagcgcac 3180 atgacatatt taatatgcca tatgtggttt gcaatctaga aatgggaaga aagttccaat 3240 tcaaatgtgc catttccaat tggaatggaa agaacttgtt atcaaccggt aggaaaagtt 3300 ctttgccgcg gccaaaccac tattctcatt tgcgcctttt tgccacagtt atgaaacctc 3360 ttgtgtcaac ttcagttcat ctggattcag taggggtcac ggtgcagttg aagaggatag 3420 agggtttgac tcttggaggc acagtgtctg tcaaacctat ttatggtcat tggacaaagg 3480 gcaagagcac cgttgatttc ctattttcgg aaatgaactt agaacatagg aaggagattg 3540 agaaactccg cagggtgaat gtggaagagt atgacaagaa aggcaaagac aagccaggaa 3600 aagaagggca agtttcagtt tccattcgtg aaaaattcac ctatggtgct gtacaatatt 3660 tgtgcatggg ctggaaagat gaagaaagat tattggtttt gccctgtgct ccatggtcca 3720 tacgatttgc acacaccagt cccgttaagg aggcaattac ttgtcccttt atagactggt 3780 gcacttcttt ttgttattgg agtggcagtt tgcaatactc cattgtgttg catcgtgttc 3840 aagcttcagc agatgttgga gggatattga acgtggccct agactcctca ggttatcctt 3900 ttcctgcagg catgcacgca gggagttacg ttgtatcagc tggaggtggt tcaaagtggg 3960 acttttctta cggtgtttct accaacacct tttcttttgt agtgtcagat gatgagttct 4020 tcccaaggag acatactcgt atgcgcgagt tttcaaagag ccaatcacgt atcatgtcct 4080 tgcaggatcg acttggaaac ttgataataa atcttccacc aaagggcctt ataagttcca 4140 ttgagattct cattgctcca ggtccagatt ttaaacttga aattgcacag cctccatctg 4200 ccaatcatga gaagttcttg ggcaacatgc aaacacacac ctatctttac accccagatt 4260 tttctgaatt gagagatttt gggggttgag aactaactat aagttatagg agccttgggt 4320 caggcatcac gacccaactt attcagataa tatgtgtact gtaattaata ttatctgtgt 4380 ttagttaggt tagtgaagaa tcatgccctt aacttgcgga gagtaatgtt cttaattgag 4440 caagagtccg gcccactcta tgggttccca tgaatctaca tgggtggaga tttgcacgct 4500 tctccttaaa tgtgtttcgt gtaccctgct tggattgaaa gccctctaca ccagaggtta 4560 aacggtctcg cgtgatggtt aacggagagt actgttcttt attgaatggg agtccggtcc 4620 actttgtgga tacccgtgaa tctacatggg ttagagattt gcacgcctct ctttaaatat 4680 ggttcgtgta ccctgcttgg ctagaaagca attgtttggt gttgtcaacg cgccgcctct 4740 ggccaagaaa acacccctta ggctttgttg gtaaagtcaa gatgtggaga aggaatgcca 4800 gcaagcataa gcagagtctc ttagggtcgg gcttaagatg gcagccagaa ttagagcctt 4860 tgagtatgct tgtgggcatc tggttttcac atcaactcgt ttggagtata aacaactcgt 4920 gtgatggtgt aatcacgtaa agcaatgaca cccggggtgt gctttcccta gttaacgtaa 4980 gtacaggttg ttctcctata ggaactagag cgttggtctc aactcaaaga gagacccgtt 5040 tgaaaatcga taaatttccg tagcttgcgt caagctgctg ttgttagggg caacagtgaa 5100 gaatcatcat acctcttctt ccctaggttc gtccagaggt ttcagagtga tggcttcttt 5160 gtcaagaagt aaagaatgac acgtgttgcg tcgacaatgc accgtatggt ttggttagcc 5220 ataaacatat atattatatt agatagtttt atctgtgtgt tctgatgatt tgaacttact 5280 ttcaattatt agtggcgaca ggagaggttt gtccttttac tcttcttgct atgttggaca 5340 caaaaagatt ttctttcttt tattttaaaa aaaaaa 5376 //