ID   GU002300; SV 1; linear; genomic RNA; STD; VRL; 2189 BP.
XX
AC   GU002300;
XX
DT   21-OCT-2009 (Rel. 102, Created)
DT   21-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Mb segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2189
RA   Qin Z.D., Jin L.L., Chen J.S.;
RT   "Characterization and sequence analysis of a Cucumber mosaic virus isolate
RT   infecting Musa basjoo in China";
RL   Unpublished.
XX
RN   [2]
RP   1-2189
RA   Qin Z.D., Jin L.L., Chen J.S.;
RT   ;
RL   Submitted (24-SEP-2009) to the INSDC.
RL   Zhejiang Sci-Tech University, Institute of Bioengineering, Xiasha 2# Road,
RL   Hangzhou, Zhejiang 310018, China
XX
DR   MD5; ebba070949822de835587efee3dfa6de.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2189
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Musa basjoo"
FT                   /isolate="Mb"
FT                   /serotype="II"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:12305"
FT   gene            86..925
FT                   /gene="3a"
FT   CDS             86..925
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q91TW4"
FT                   /protein_id="ACX71580.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHDLPALISFQPTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILNESPPIAIGSPSASRNNSFRSQVVNGL"
FT   gene            1211..1867
FT                   /gene="cp"
FT   CDS             1211..1867
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="cp protein"
FT                   /note="capsid protein"
FT                   /db_xref="GOA:D0V1D9"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:D0V1D9"
FT                   /protein_id="ACX71581.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLTEMRADIGDMSKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2189 BP; 509 A; 509 C; 514 G; 657 T; 0 other;
     gtaatctaat attattacca cgtaatttac cactttttgt gtgtgtgtgt gttagttagt        60
     gtgtcgtgtt tagattacca aggttatggc tttccaaggt accagtagga ctttaactca       120
     acagtcctcg gcggcgtcgt ctgacgactt acagaagata ttattcagcc ccgatgccat       180
     caagaagatg gctactgagt gtgacctagg tcgacatcat tggatgcgcg cggataacgc       240
     catctctgtc agacctctcg ttccccaagt aaccagtaac aatttactgt ctttctttaa       300
     atctgggtat gatgccggtg aattgcgctc taaaggctat atgagcgttc ctcaagtgct       360
     gtgtgccgtt accagaacgg tttctacgga tgctgagggt tctttgaaaa tttatttggc       420
     tgacctaggt gataaagaat tatccccaat tgatgggcag tgtgttactt tacacaacca       480
     tgatcttcct gctttgatat ctttccaacc tacctacgat tgccccatgg aattagttgg       540
     caatcgacat cgatgtttcg cggtagtcgt tgagagacat ggttatattg gttacggtgg       600
     taccactgct agcgtgtgta gtaactggca agcccagttt tcttcaaaga ataataatta       660
     cacacacgcc gctgctggta agactcttgt gttgccttac aacagattag ctgagcattc       720
     gaaaccgtca gccgtcgctc gcctgttgaa gtcgcagtta aacaacgtta gctcatcgcg       780
     ctatcttttg ccgaacgttg ctcttaatca aaatgcgtct gggcacgagt ccgagatttt       840
     gaacgaaagc cctcccatcg ctatagggag tccgtccgcg tcccgtaaca atagcttcag       900
     atcgcaggtg gttaacggtc tttagtgttt tgttacgttg tacccatgta tacatatact       960
     acgtttatct tccgtaggta aatacatgtg agtctagagt cccgtgtgag ttgtaacggt      1020
     agacatctgt gacgcgaagt cgcctgaaga tttcccatct ggggttagta agtccacatc      1080
     acagttttaa ggttcaattc cttttgctcc ctgttgggcc ccttactttc tcatggatgc      1140
     ttctccgcga gttagcgttt atttgtttac ctgagtcgtg cgttttcttt gtttgcgtct      1200
     tagtgtagat atggacaaat ctggatctcc caatgctagt agaacctccc ggcgtcgtcg      1260
     cccgcgtaga ggctctcggt ccgcttctgg tgcggatgca gggttgcgtg ctttgactca      1320
     gcagatgctg agactcaata aaacccttgc cattggtcgt cccactctta accacccaac      1380
     cttcgtgggt agtgaaagct gtaaacccgg ttacactttc acatctatta ccctgaaacc      1440
     gcctgaaatt gaaaaaggtt catatttcgg tagaaggttg tctttgccag attcagtcac      1500
     ggactatgat aagaagcttg tttcgcgcat tcaaatcagg attaatcctt tgccgaaatt      1560
     tgattctacc gtgtgggtta cagttcggaa agtaccttca tcatccgatc tttccgtcgc      1620
     cgccatctct gctatgtttg gcgatggtaa ctcaccggtt ttggtttatc agtatgctgc      1680
     gtccggagtt caggccaaca ataagttact ttatgacctg accgagatgc gtgctgatat      1740
     cggcgacatg agtaagtacg ccgtcctggt ttattcgaag gacgataaac tagagaagga      1800
     cgagattgta cttcatgtcg acgtcgagca tcaacgaatt cctatctcac ggatgctccc      1860
     gacttagtcc gtgtgtttac cggcgtccga agacgttaaa ctacactttc aatcgcgagt      1920
     gttgagttgg tagtattgct tcaaactgcc tgaagtccct aaacgtgttg ttgcacgggg      1980
     aacgggttgt ccatccagct tacggctaaa atggtcagtc atgcttcaaa ggcatgccga      2040
     caccttacaa ggttgtcgag gtacccttga aatcatctcc tagatttctt cggaagggct      2100
     tcgtgagaag ctcgtgcacg gtgatacact gatatcacca agagtgcggg tatcgcctgt      2160
     ggttttccac aggttctcca taaggagac                                        2189
//