ID GQ996952; SV 1; linear; genomic RNA; STD; VRL; 6005 BP. XX AC GQ996952; XX DT 01-APR-2010 (Rel. 104, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Bean pod mottle virus isolate Iowa-Desmodium illinoense 1 segment RNA1, DE complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6005 RX DOI; 10.1007/s00705-011-1005-0. RX PUBMED; 21562882. RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT "Landscape epidemiology of bean pod mottle comovirus: molecular evidence of RT heterogeneous sources"; RL Arch. Virol. 156(9):1615-1619(2011). XX RN [2] RP 1-6005 RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT ; RL Submitted (21-SEP-2009) to the INSDC. RL Department of Plant Pathology, Iowa State University, 351 Bessey Hall, RL Ames, IA 50010, USA XX DR MD5; 18d302c6a2de0bc2bac6e3014c61a67e. XX FH Key Location/Qualifiers FH FT source 1..6005 FT /organism="Bean pod mottle virus" FT /segment="RNA1" FT /host="Desmodium illinoense" FT /isolate="Iowa-Desmodium illinoense 1" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: I" FT /db_xref="taxon:12260" FT CDS 368..5923 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:D5IC37" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D5IC37" FT /protein_id="ADD92354.1" FT /translation="MKFYPGQNISEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSIEEMEYDDGELIFSYFQNFLLSIVSNSSKTTKLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNTVDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLLMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFITNSELVTC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLVAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLEVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEANKLMRESAL FT HCSKTIRKIPFVIFAHGESRVGKSLLVDKLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLVSSAPYPLNMAGLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAHCFTKWERHVKEQESNLSQIKGKKSESGHFYNFQQLMDLAVSWNLNADIMKN FT RIKAERSDMVYVFSAGRKDKILHCFLNKEGECTVRPDSIDDPEAQALLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYTGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYTNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVGLEKCVPTLVGIECPK FT DEKLPXRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFISLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSE FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRIMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDDKLVLANTQEFFDGNFPTDSWLPIFVNCLYPVSQLPAEAVTVNVVC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 6005 BP; 1740 A; 982 C; 1322 G; 1960 T; 1 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctttctac 120 atttcttgta tacggctttc aaagtgaaag aaaatcactc tctgtgctgg tcacagactt 180 cgtgaatcat tttctttctg ctctcagttc atttgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttgaa cttctcctat ctctttttct cggttcttca tttgatttca 300 aacttttctg aaatttaaat ctcttttgac attttgaact ttgtgttggc tccatttgaa 360 aaacaacatg aagttctatc ctggtcaaaa tatttccgaa attgtttacc actttcagag 420 taatgagaca gccaataggt tagatgcata ttttgcttgt ggctgtgagg aggatactga 480 agtcctcgct cgtttgaagc agtgtaatcc tcgtctgctt catctgtcat atgctgcctt 540 ttgtttggaa atgggcagtc attcaataga ggaaatggaa tatgatgatg gggaattaat 600 tttttcctat ttccaaaact ttttactttc catcgtttcc aattcttcta aaacaaccaa 660 attgagagca tacattcgtt cagcatttgc atatcatttt cagcattttg ttgaatttga 720 tcaatataca aatgattctc tcaatactgt ggatacaagt gtatcagccc aagggatagc 780 agacttggct ctctctatgg ttagatggat acccactcag attaaaaaag ttgttaattt 840 tggtgtggga tctgttatag agtctttttc agagcatttt aataagctct tgatgcaata 900 ttgtccaata gtttttcaag ctttcagctg ggtcaacaat atttggacaa tggtcaaaga 960 gtggatagaa gaagctgcga aagagatttc atggtttttg caaggatgca aagagttgct 1020 agcctgggga atgtgtattt tggctagctc ctgtgctcta ggattggttg aaaaatgcct 1080 tatctctttg ggcatgattt ccgaatcttt tgatttggtt ggtttgtttg ttcgatctgc 1140 cattgtggga gctttctgtg tttccataaa aactggcaag ttcatcacga atagtgaatt 1200 ggtcacttgt gctaccattg cagtttctac aatagcaact gtaatgtctc aggcttttaa 1260 gccttctgaa gagattaagg ggcagttcca agccctttca gttctagaag ggttggcaac 1320 acagctcact tcgttttgtg acacgtcttt agttgctatg ggaaaaacct gcacagcttt 1380 taatcaaatt tgcactgctg gcaaaaatgt taaggtgatt gcaggtaggt tgctggaagt 1440 tgtttctaat tttgtcagaa aattattagg attggatagt gcttttctca gagatgctgc 1500 actcattttt tcccaagatg tggatggatg gttgcgtaac atcagttggt gccaagaaca 1560 gtttttgttg aaagcttaca tgtcgcaaga tgatcttatt gtcctgcgct ctttagttgt 1620 taaaggtgaa agaatgaggg aacagatgct tgaaggagaa gttaaggtat ctccaagtgt 1680 ttgcaacctt attgtcaaag gctgtgaaga agcaaataaa ttgatgcgtg agagcgcact 1740 tcattgttca aaaacaatta ggaagattcc ttttgttatt tttgctcacg gtgaatcccg 1800 agttgggaaa tctctgttgg ttgataagct aatcacagat ttctgtgatc atttggaaat 1860 tggagaagat gctgtgtact caaggaatcc atcagatcct ttctggagtg gatatagaag 1920 gcagccaatt gttactattg atgattttgc tgctgttgtt tcggagccat ctgctgaagc 1980 tcaattaatt ccattagttt caagtgctcc ttatccatta aacatggctg gtttagagga 2040 gaagggaatg cactttgatt cccagatcat gatgtgttct tcaaatttct tagagccgtc 2100 tcctgaagct aaaattagag atgatatggc ttttagaaat cggagacatg tgctgatcac 2160 agttgaactc aaacctgggg ttgaatatga tgagagtgat tttactaaaa atcagcgata 2220 tttgctgaaa acttggtttc atgatcatta tgttgtagac caaacttttg agtcctatgc 2280 tgatctgctg gcacattgtt ttaccaagtg ggagagacat gttaaggagc aagagtcaaa 2340 tctgtctcaa attaagggca agaaaagtga aagtggtcat ttttataatt ttcaacaact 2400 tatggatttg gctgtttctt ggaatcttaa tgcagatatc atgaaaaaca ggatcaaggc 2460 tgagagaagt gacatggttt atgttttttc tgcagggagg aaggataaaa ttttgcattg 2520 ttttctgaac aaggaaggcg agtgcacggt tcgtcctgat tcaatagatg atcctgaagc 2580 gcaagctttg ctcaaagctt cagagacaat gctcatgaaa gcctatgcct tccttaaata 2640 caataatgca acaaatttga ttgtcagaac ccatttggca gaactagtga atgaagattt 2700 ttatgatgag aaattcaatt tcattggaac aattggaaca ccggcttttc atcgccaaat 2760 agctgcacat ttggaaaaga tgccattgtg gcaaaaagca attttgtgtg gaatgggaca 2820 ttgtttgtct cggaaaagca aagagacctg gtatactggt atgaaggaga aatttgtgca 2880 gatgatgaaa agcatctatg aaactgaagt cacagactgg ccagtgccat tgaaaatcat 2940 ttctggtact attctagcca ccattttggg aacaactttt tggaagttat tttccttttt 3000 aagggatgct ggcaatggag gtgtttttgt tggtaatgtt gcttcagcat ttaccacatc 3060 aagtgtgctt gaggcgcaaa gccgaaaacc caacagatat gaggtctctc aatataggta 3120 tcgcaatgtg ccaataaagc gcagagcgtg ggttgagggt caaatgtctt ttgatcaatc 3180 agtggtggca attatgtcaa aatgtaaagc cagtatgaga atgggaaaca ctgatgctca 3240 aattttgatg gttccagggc gtagattcat tgcacatggt cattttttca agaatctcac 3300 ccaaaaagtt agagtccaaa ttgttacttc tgagaaaagc tattggcatg tgtatgatcc 3360 tgataaattt caaatgtttg ataacagtga aatcgggttg tatacaaatc caactttgga 3420 ggacatccca cattctgctt gggacctttt ctgctgggac agtgagaaaa ctttgccaaa 3480 caatttttct gctgaattgc tttcctgtaa attggacacc gttacgggac aatattaccc 3540 agaatgggct ccaataaatt gtcgagtaca tcggcaacca attcacataa ctgaagggaa 3600 ttatgtcagg aaacaagatg tgagcattga atatgatgcc tgcacaattc ctaatgattg 3660 tggatctctg gtggttgcta aggtcggaaa tcacaagcaa attgttggtt tccatgttgc 3720 tggaagtaaa ggaagattgg gctatgcttc attaatacca tatgttgagc ctgtggtaca 3780 agcccaaagt gctgaagtct attttgattt ctttcctgtg gaagttgata gtcaagaggg 3840 agttgctcat attggtgaac tcaaatctgg agtttatgta ccattgccca caaaaactaa 3900 tcttgtggaa actcccaaag aatggcagtt ggatttgcct tgtgataaga ttccaagtgt 3960 gttaaccact actgatgaga gattggttgg cacagagcat gaaggatatg acccatttct 4020 tggtggtatt caaaaatatg caactcccat gatgcctcta gatgaggaga ttctttccaa 4080 agttgcacaa gacatggttg aagaatggtt tgattgtgtt gatgaggagg atacatttga 4140 agaagtttct ttgagtgctg cactcaatgg tgttgaaggt ttggattaca tggaacgcat 4200 tcctcttgcc acttcagagg gttttcctca tgttctgtcc aggaaaaatg gtgaaaaagg 4260 caagagaaga tttgtcactg gagatggtga agaaatgtca ctaattcctg gtaccagtgt 4320 tgaagaagca tacaataaat tgactgttgg actagaaaag tgtgttccaa cattggttgg 4380 catagaatgt cccaaagatg aaaaacttcc ccwtcgcaaa atttttgata aacccaagac 4440 gcgctgcttc accatacttc ctatggaatt taatctggtg gtgcgtcaaa aattcttgaa 4500 ttttgtgcga ttcattatga agaaaaggga caaattgagt tgccaagttg gaatcaatcc 4560 atattctatg gagtggactg gtttggcaaa tagactgttg agcaagggaa atgacatttt 4620 gtgttgtgat tatgctagtt ttgatggtct gataactaag caagtcatga gcaagatggc 4680 agaaatgata aacagtcttt gtggtggaga tgagaaactg atgcgtgaga gaacgcatct 4740 tctgttagct tgttgctcca ggatggcaat ctgtaaaaaa gatgtttgga gagttgagtg 4800 tggtatccct tctggatttc cactcactgt tatctgcaat agcattttca atgagatgct 4860 tatcagatat agttatgaaa agttgctgcg tcaagctaag gctcctagta tgtttctcca 4920 gtcttttaaa aattttattt ctttgtgtgt ttatggagat gataatttaa ttagtgttca 4980 tgagtatgtt aagccatatt ttagtggttc taaattgaaa agtttcctag ctagtcataa 5040 catcaccatt actgatggaa ttgacaaaac tagtgcaact ttacagttta gaaagttgtc 5100 agagtgtgat tttcttaaaa gaaattttaa gcaaatgtcc aatgttttgt gggtagctcc 5160 tgaagacaaa gctagtttgt ggtcacaatt acactatgtt tcatgtaaca atttggaaat 5220 gcaagaagct tatcttgtta acttggttaa tgtgttgcgt gagttgtacc tgcacagtcc 5280 agaagaagct cgtcaattga gaagaaaggc tctctctcgc attgagtggt tgcaaaaagc 5340 tgatgtgccc accatagcac aaattgaaga atttcattca atgcagagga ttatgaatgc 5400 tcctgactca aatgataata ttgatctttt gttgagcatc gacttgttgg gtcttcaggg 5460 tgcaggcaag gccttcccaa ataagattgt gtttgatgat aaattggtat tggcaaatac 5520 acaagaattt tttgatggaa attttccaac agattcttgg ttaccaatat ttgtcaattg 5580 tctttaccct gtgagtcaat tgcccgcaga ggctgtcact gttaatgttg tttgtgggag 5640 tgggcgtggt ggtttgccta ctactgcttg gattagttct gcagttaaca atcgctcctc 5700 agatatcaat aagaaaattc ggacagcact tggaaaaggt aagaaaattg tctttttgac 5760 tagagttgat ccttttcctg tggccttgtt agctgttctt tttggtgtta agaacgaaat 5820 tctgagttct aatgccacaa atccaatgtt gacaaggctt cttgagaact gcaagagtct 5880 taaatatttg gttgatgagt gtccttttgc atttgttaac tagtttgtaa tattttgctc 5940 acttaaataa agcgcattac tatgtgcaat aagtgtgttt aaatataaaa aaaaaaaaaa 6000 aaaaa 6005 //