ID GQ996951; SV 1; linear; genomic RNA; STD; VRL; 6008 BP. XX AC GQ996951; XX DT 01-APR-2010 (Rel. 104, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Bean pod mottle virus isolate Iowa-Desmodium illinoense 1 segment RNA1, DE complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6008 RX DOI; 10.1007/s00705-011-1005-0. RX PUBMED; 21562882. RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT "Landscape epidemiology of bean pod mottle comovirus: molecular evidence of RT heterogeneous sources"; RL Arch. Virol. 156(9):1615-1619(2011). XX RN [2] RP 1-6008 RA Bradshaw J.D., Zhang C., Hill J.H., Rice M.E.; RT ; RL Submitted (21-SEP-2009) to the INSDC. RL Department of Plant Pathology, Iowa State University, 351 Bessey Hall, RL Ames, IA 50010, USA XX DR MD5; acbd68392bf023bc19fdb8e8602c690b. XX FH Key Location/Qualifiers FH FT source 1..6008 FT /organism="Bean pod mottle virus" FT /segment="RNA1" FT /host="Desmodium illinoense" FT /isolate="Iowa-Desmodium illinoense 1" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: II" FT /db_xref="taxon:12260" FT CDS 370..5925 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:D5IC36" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:D5IC36" FT /protein_id="ADD92353.1" FT /translation="MKFYPGQNVSEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLFYAAFCLEMGSHSVEEIEYDDGELVFLYFQNFLLSIVSNSSKTANLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNVMDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLIMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFVSNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALTVLEGLATQLTSFCDTSLIAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLDVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEASKLMRESVL FT HCSKTVRKIPFVIFAHGDSRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVASEPSAEAPLIPLISSAPYPLNMASLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAYCFTKWERHVKEQESNLSQIKGKKSESGHFNNFQQLMDLAVSWNLSANIMKE FT RIKADKSDMVYVFSAGRKDKIVHCFLNKEGECSIRPDSIEDPEAQLLLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYSGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYSNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVSGDGEEMTLIPGTSVEEAYNKLIVELEKSVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLAD FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRMMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDNKLVLANTQEFFDGNFPVDSWLPIFVNCLYPVSQLPSEAVVVNVTC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 6008 BP; 1752 A; 991 C; 1302 G; 1963 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcacaggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gttctcaaga atctttaaac tttcttctgt 120 tttctctgca ctcggttctt caagaaaaga aaatcactct ctgtattgat tacagacttc 180 gtgaatcatt ttcttttcaa ctttcagttc acttgctgaa cactctccta taaatatata 240 ggacttcgtg tcagatttga acttttcctg tctctttctc ggttttcttt cttattctca 300 tcttctttaa attttaaggc tcgtattttg tttctttaaa ctttctgttg gactcatttg 360 aaatacaaca tgaagtttta tccaggacaa aatgtctctg aaattgttta ccattttcag 420 agtaatgaga cagctaatag gcttgatgct tattttgcct gtggctgtga agaggatact 480 gaagtcctcg ctcgtttgaa gcaatgtaac cctcggttat tgcatttatt ttatgctgct 540 ttctgtttgg aaatgggcag tcattctgtt gaagaaatag aatatgatga tggagagttg 600 gttttcttgt atttccaaaa ttttctactc tccatagtgt ccaattcttc caaaacagcg 660 aatctgagag catacatacg ttcagctttt gcatatcatt ttcagcactt tgttgaattt 720 gatcaatata caaatgattc tctcaatgtg atggatacaa gcgtatctgc tcaaggaatt 780 gcagatttgg ccttgtccat ggtcagatgg attcctactc aaattaaaaa agtcgtgaat 840 tttggagtag gatcggtcat agaatccttt tcagaacatt tcaataagct cataatgcaa 900 tattgtccaa tagtgttcca agcttttagc tgggttaaca atatttggac catggttaaa 960 gaatggattg aagaggctgc gaaggaaatt tcttggttcc tgcagggttg taaggaattg 1020 ttagcctggg gaatgtgtat tctggctagt tcctgtgctt tgggattggt tgaaaaatgt 1080 ctcatttctt taggcatgat ttctgaatct tttgatttgg ttggtttgtt tgttcgatca 1140 gccattgttg gggccttctg tgtttctatc aagacgggca agtttgtttc aaatagtgag 1200 ttgatcacat gtgctaccat tgcagtttct acaattgcaa ctgttatgtc tcaagctttc 1260 aaaccttctg aagaaattaa agggcaattc caggctctta ctgttttaga aggattggca 1320 acacaactca cttcattttg tgacacatct ttgattgcca tgggaaaaac ttgcacagca 1380 tttaatcaaa tttgtactgc tgggaaaaat gttaaggtga ttgctggcag attgttggat 1440 gtagtttcca attttgtaag gaaacttttg ggattggata gtgcttttct tagagatgca 1500 gcgcttatct tctctcaaga tgttgatggt tggctgcgca atatcagttg gtgtcaggaa 1560 caattcctat tgaaagcata catgtctcaa gatgatctta ttgtcttgcg ttccttagtt 1620 gtcaaaggtg aaagaatgag agagcaaatg ctggagggag aggtcaaagt gtctcctagt 1680 gtttgtaatc ttattgtaaa aggttgtgaa gaagcaagta agttgatgag agaaagtgtg 1740 ctacattgtt caaagactgt acggaaaatt ccatttgtca tttttgcaca cggtgattct 1800 cgtgttggaa aatctttgct agttgataga cttatcacag atttttgtga tcatctagaa 1860 attggggagg atgctgttta ttcaaggaat ccttcggatc ctttctggag tgggtatagg 1920 agacaaccaa tcgtcactat tgatgatttt gctgctgttg catcagagcc atctgctgag 1980 gctccattga ttccattgat ttcaagtgct ccatacccat tgaacatggc aagtttagag 2040 gaaaagggaa tgcactttga ttcccagatc atgatgtgct cttcaaattt tttggaacct 2100 tctcctgaag ccaaaattag agatgacatg gcttttagaa atagaagaca tgttttgata 2160 acagttgagc ttaaacctgg agtggagtat gatgagagcg attttaccaa aaatcagcgg 2220 tatttactca aaacttggtt tcatgatcat tatgttgtag accaaacttt tgaatcttat 2280 gctgatcttt tggcatattg cttcactaaa tgggagagac atgtgaagga acaagagtct 2340 aatttgtctc aaattaaagg caagaaaagt gagagtggcc atttcaataa ttttcaacaa 2400 cttatggatt tggcagtttc atggaatctc agtgcaaata tcatgaagga acgaatcaaa 2460 gctgataaaa gtgatatggt ttatgtcttc tctgctggaa ggaaggacaa aattgtacat 2520 tgcttcttga ataaagaagg cgaatgtagt atacgtcctg attcaataga agatccagaa 2580 gcacaacttt tgctcaaagc ttcagaaact atgctcatga aagcttatgc ttttttgaag 2640 tacaacaatg cgaccaattt gattgtcagg acccatttgg cagaattggt caatgaagac 2700 ttttatgatg aaaaatttaa ttttattggc acaattggga ctccagcttt tcatcgacaa 2760 attgctgcac acttggagaa aatgccatta tggcaaaaag caattttgtg tggaatggga 2820 cattgtttgt ctcggaaaag caaagaaaca tggtattctg ggatgaagga aaaatttgta 2880 caaatgatga agagcatcta tgaaacagaa gtcacagatt ggccagtacc actgaaaatc 2940 atttctggaa ccattcttgc aacaattttg ggaacaacct tctggaaact cttttccttt 3000 cttagagatg ctggtaatgg gggagttttt gttggtaatg ttgcttcagc attcacaact 3060 tcaagtgtgc ttgaggccca gagtagaaag cccaacagat atgaagtttc ccaatacaga 3120 tatcgcaatg tgccaataaa gcgcagagca tgggttgaag gccagatgtc tttcgatcag 3180 tctgtagtag caattatgtc taaatgcaaa gccagcatga gaatgggaaa cactgatgct 3240 caaattttga tggttccagg gcgcagattc atagctcatg gacatttttt caaaaatctg 3300 actcagaaag tgcgagtcca aattgttaca tctgaaaaga gttactggca tgtgtatgat 3360 cctgacaagt ttcagatgtt tgacaacagt gaaataggtc tttattctaa tcccactttg 3420 gaagatatcc cacattcagc ttgggacctt ttttgctggg acagtgagaa aactttgcca 3480 aataattttt ctgcagaatt gctctcttgc aaactggata ctgttactgg ccaatattat 3540 cctgagtggg ctccaattaa ttgtcgagtt catcgacaac caattcacat cactgaagga 3600 aattatgtca gaaagcaaga tgtcagcatt gaatatgatg catgtacaat tccaaatgat 3660 tgtggttcat tggttgttgc caaggttgga aatcacaaac aaattgttgg tttccatgtt 3720 gctggaagca aaggaagact gggatatgct tcattgatac catatgttga gccagttgtg 3780 caagctcaaa gtgctgaagt ttactttgac ttcttccctg tggaggttga tagtcaagag 3840 ggagttgctc acattggtga attgaaatct ggtgtctatg ttccactgcc tacaaaaact 3900 aatttggtgg aaactcccaa ggaatggcaa ctggatctac cttgtgacaa aattcctagt 3960 gttttgacta caactgatga gagattggta ggcacagaac atgagggata tgaccctttt 4020 cttggtggaa ttcaaaaata tgccactccc atgatgcccc tagatgaaga aattctttct 4080 aaggttgcac aagatatggt tgaggaatgg tttgactgtg ttgatgagga ggattccttc 4140 gaggaagttt ctttaagtgc agcactcaat ggtgttgagg gtttggacta tatggaaaga 4200 attcctcttg ccacatctga gggttttcct catgtgcttt cacgcaaaaa tggcgaaaaa 4260 ggcaaaagga gatttgtttc tggggatggt gaagagatga cattgattcc gggaaccagt 4320 gttgaagagg cttacaacaa gctaatagtt gaacttgaga aaagtgttcc tacattggtt 4380 ggcattgaat gtcccaagga tgagaaactc cctcgtcgca aaatttttga caaacctaag 4440 acgcgctgct tcactattct ccctatggag tttaatcttg tggttcgtca gaagttttta 4500 aattttgtga ggttcattat gaagaaaagg gacaagctta gttgtcaagt tggaatcaac 4560 ccatactcca tggaatggac tggtttggcc aatagattac tgagcaaggg caacgatatt 4620 ctgtgttgcg attatgctag ttttgatggt ttgattacca agcaagttat gagcaagatg 4680 gcagaaatga taaacagtct ttgtggtggt gatgaaaaat tgatgcgtga aaggacacac 4740 ctgctgttgg cttgttgttc aaggatggca atttgtaaga aagatgtttg gagagttgaa 4800 tgtggaatcc cttctggatt tccgctcaca gttatttgca atagcatttt taatgagatg 4860 ctcattagat atagctatga aaaattactg cgccaggcta aagctccaag tatgttttta 4920 caatccttca aaaattttgt ttctttgtgt gtgtatggtg atgataactt aattagtgtt 4980 catgaatatg tcaagcctta ctttagtggt tctaaattga aaagctttct agctggtcat 5040 aatattacca ttactgatgg tattgacaaa actagtgcaa ctttgcaatt tagaaagtta 5100 gcagattgtg attttctcaa gagaaacttt aagcagatgt ctaatgtttt gtgggtggct 5160 cctgaagaca aggcgagttt atggtcacag cttcattatg tttcgtgtaa taatctggaa 5220 atgcaagaag cttatcttgt caatctcgta aatgtgttac gagaattgta tttgcacagt 5280 ccagaggaag ctcgccaatt gagaaggaaa gctctctctc gtattgaatg gctgcaaaaa 5340 gctgatgtgc ctaccatagc acagattgaa gagttccatt caatgcagag gatgatgaat 5400 gctcctgatt caaatgataa tattgatcta ctgttgagca ttgatttgtt gggtttacaa 5460 ggagcaggta aagcttttcc aaacaagatt gtttttgata ataagcttgt gttggctaac 5520 acacaagaat tctttgatgg aaattttcca gtggattctt ggttaccaat ttttgtgaat 5580 tgcctttatc ctgtaagtca attaccttca gaagcagttg ttgtaaatgt tacatgtggt 5640 agtggacgtg gtggtttacc caccactgct tggattagtt ctgcagttaa caatcgctcc 5700 tcagatatca acaaaaagat tcgcacagca cttgggaaag gtaagaaaat tgtttttctt 5760 actagagttg atccttttcc agtagctcta ctggctgttc tttttggcgt taagaatgaa 5820 attctgagtt ctaacgccac taatcctatg ctgacgcgac ttcttgagaa ctgtaagagt 5880 ctcaaatatc tggttgatga gtgtcctttt gcatttgtga actagtatgt aatattttac 5940 tcacttaaat aaagcgcatt actatgtgca atgagtgtgt ttaaatataa aaaaaaaaaa 6000 aaaaaaaa 6008 //