ID GQ994098; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC GQ994098; XX DT 30-SEP-2011 (Rel. 110, Created) DT 30-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Tomato leaf curl Gujarat virus isolate Ramgarh, complete genome. XX KW . XX OS Tomato leaf curl Gujarat virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RA Kumari P., Chattopadhyay B., Chakraborty S.; RT "Diversity of tomato infecting begomoviruses in India"; RL Unpublished. XX RN [2] RP 1-2761 RA Kumari P., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (22-SEP-2009) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Delhi, Delhi RL 110067, India XX DR MD5; 42ab224f40f5af219b044e2ecf506104. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Tomato leaf curl Gujarat virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="Ramgarh" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Punam Kumari" FT /collection_date="Dec-2007" FT /db_xref="taxon:219299" FT gene 143..490 FT /gene="AV2" FT CDS 143..490 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="required for viral movement and suppresion of host FT defense" FT /db_xref="GOA:G4V2V1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G4V2V1" FT /protein_id="ADN85606.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDL FT ISVIRARNYVEATSRYAHFHARFEGTSPSQLRQPIGEPCCCPHCPRHQSKGMGQPAHVS FT EAQNLQNVQEP" FT gene complement(294..611) FT /gene="AC5" FT CDS complement(294..611) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G4V2V2" FT /protein_id="ADN85611.1" FT /translation="MGQPNSPRNIGQTDHLTHVTNIVLSIERLDLTRTLTALRHIRAPV FT HSVDSGLPIHGPVGPCLCFGDADNGGSSTAHRWAVEVETATYLRSGRENEHICWSLRHN FT F" FT gene 303..1073 FT /gene="AV1" FT CDS 303..1073 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for encapsidation of viral DNA and insect FT transmission" FT /db_xref="GOA:G4V2V3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G4V2V3" FT /protein_id="ADN85605.1" FT /translation="MSKRPADMLIFTPASKVRRRLNFDSPSVSRAAAPIVRVTKAKAWA FT NRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPSDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRRFFRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1070..1474) FT /gene="AC3" FT CDS complement(1070..1474) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="enhances viral replication" FT /db_xref="GOA:G4V2V4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G4V2V4" FT /protein_id="ADN85609.1" FT /translation="MDSRTGELITAAQAENGVFTWEIQNPLYFKITEHQNRPFLMNEDI FT ITVQIQFNHNLRKVLGIHKCFLTYRLWMTSQPPTGRFLRVFKTQVLKFLNNLGVISLNN FT VIRAVNYVLWDALTQTTFVDSSHIIKFNLY" FT gene complement(1215..1619) FT /gene="AC2" FT CDS complement(1215..1619) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; suppressor of RNAi; enhances transcription of FT virion sense ORFs" FT /db_xref="GOA:G4V2V5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G4V2V5" FT /protein_id="ADN85608.1" FT /translation="MRPSSPSNAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALT FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRAPKPALPDERRHHHRPDTVQSQP FT EESVGDTQMFPNLPTLDDLTASDWSFLKGI" FT gene complement(1522..2607) FT /gene="AC1" FT CDS complement(1522..2607) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep" FT /db_xref="GOA:G4V2V6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G4V2V6" FT /protein_id="ADN85607.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTFKKFIR FT ICRELHDDGTPHLHVLIQFEGKSQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVVDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPMDVYVSPFLSSSFDQVPEELEEWAAENVGSPAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTTFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLERPL FT YSGTNQSTAQASQEGDQTSTS" FT gene complement(2157..2453) FT /gene="AC4" FT CDS complement(2157..2453) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="suppressor of RNAi and pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G4V2V7" FT /protein_id="ADN85610.1" FT /translation="MMGLLTCMCSSSSKESPSAKTIDSSTSHLQPGQHISIRTFRELRA FT QAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2761 BP; 716 A; 560 C; 646 G; 839 T; 0 other; accggatggt cgcgattttt tttttgggcc ccacaacgca ataacttaca aagacatgcg 60 gaccaatcac ctgacgcgct caaagcttaa ttgttttgtg ttctctattt aaacttgggc 120 accaagtagt gtagttcgta ctatgtggga tcctttgtta aacgagtttc ctgaaaccgt 180 tcacggtttt agatgtatgt tagcagttaa atatcttcag ttagtagaaa agacttattc 240 tcctgacaca gtcggttacg atttaatcag ggatttaatt tcagttatta gggctagaaa 300 ttatgtcgaa gcgaccagca gatatgctca ttttcacgcc cgcttcgaag gtacgtcgcc 360 gtctcaactt cgacagccca tcggtgagcc gtgctgctgc ccccattgtc cgcgtcacca 420 aagcaaaggc atgggccaac cggcccatgt atcggaagcc cagaatctac agaatgtaca 480 ggagccctga tgtgcctaag ggctgtgagg gtccgtgtaa ggtccagtcg ttcgatgcta 540 agaacgatat tggtcacatg ggtaaggtga tctgtttgtc cgatgttacg aggggaattg 600 ggctgaccca tcgagtgggt aaacgttttt gcgttaagtc tttgtatttc gtcgggaaga 660 tctggatgga cgagaatatt aaggtgaaga accacacaaa caccgttatg ttttggatag 720 tacgtgatag gcgtcctagt gggactccca gtgattttca gcaggttttt aacgtatatg 780 ataatgagcc ctctactgcg actgttaaga atgaccagcg tgatcgcttt caagtcttac 840 ggaggtttca agcgactgtt actggaggac aatatgcagc caaggagcag gcgataatta 900 gaagattttt tcgtgttaat aattacgtag tttataatca ccaggaagct gggaagtacg 960 aaaaccatac tgagaatgct ttgttgttgt atatggcatg tactcatgcc tctaatcctg 1020 tgtatgctac tctcaaagtg aggagttatt tctatgactc agtcacaaac taataaagat 1080 taaattttat tatatgcgaa ctgtctacaa atgttgtttg cgtcaatgca tcccatagta 1140 cataattcac tgctctaatt acattattca aactaattac acccaaatta ttaagaaatt 1200 tcaacacttg tgttttaaat acccttaaga aacgaccagt cggaggctgt gaggtcatcc 1260 agagtcggta ggttaggaaa catttgtgta tccccaacac tttcctcagg ttgtgattga 1320 actgtatctg gacggtgatg atgtcttcgt tcatcaggaa gggccggttt tggtgctctg 1380 ttatcttgaa atatagggga ttttgaatct cccaggtaaa cacgccattc tctgcttgag 1440 ctgcagtgat gagttcccct gtgcgtgaat ccatggtcgt ggcaggttaa tgctatgaag 1500 taagaacagc cacacggtag atcaactcgt cgacgtctgg tccccttctt ggctagcctg 1560 tgctgtactt tgattggtac ctgagtagag tgggcgttcg agggtgacga aggtcgcatt 1620 ttttaaagcc cagtttttta gtgcagaatt cttttcttca tccaagtatt ctttatagct 1680 ggagttgggt cctggattgc agaggaaggt agtgggaatt ccgcctttaa tttgaactgg 1740 cttcccgtac tttgtatttg attgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaggtag tgggggtcga cgtcatcaat gacgttgtac caggcatcat tactgtagac 1860 ctttgggcta aggtctagat gaccacacaa atagttatgt ggtcccaatg atctggccca 1920 catagtcttc cccgtcctac tgtcaccctc aattactata cttatgggtc tcagaggccg 1980 cgcagcggga ctgccgacgt tctcggcagc ccactcttca agttcttctg gaacttggtc 2040 gaaagaagaa gataaaaaag gtgaaacata aacatccatt ggaggtgtaa aaatcctatc 2100 taaattagaa tttaaattgt gaaattgtaa aacaaaatct ttgggagctt tctcccttaa 2160 tatattgagg gcctgagctt tggaccctga attgattgcc tcggcatatg cgtcgttggc 2220 agattggcaa cctcctctag ctgatcgtcc atcgacttgg aaaactccat gatcaacgac 2280 gtctccgtct ttttccatgt aggatttgac atcgcttgag ctcttagctc cctgaatgtt 2340 cggatggaaa tgtgctgacc tggttggaga tgtgaggtcg aagaatctat tgtttttgca 2400 ctgggacttt ccttcgaact ggatgagcac atgcaagtga ggagtcccat catcgtgaag 2460 ctctctgcaa attctaataa attttttgaa agtgggtgtt tggagattta ataattggga 2520 aagtgcctct tctttagtta gagagcactt gggataagtg agaaaataat ttttggcatt 2580 tattttaaag cgattggggg ctgccatgtt gacttggtca atcggtgtct ttcaactctc 2640 tctatgtatc ggtgtatggg agtccctata tatatgggag actccaatgg cataaatgta 2700 aatattgaac tttaatcaaa acccctaacg ctcccaaaaa gcggccatcc cgtataatat 2760 t 2761 //