ID   GQ907002; SV 1; linear; genomic RNA; STD; VRL; 905 BP.
XX
AC   GQ907002;
XX
DT   19-OCT-2009 (Rel. 102, Created)
DT   19-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus aphid transmission factor gene, partial cds;
DE   and capsid protein and movement protein P17 genes, complete cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-905
RA   Joomun N., Dookun-Saumtally A.;
RT   "Occurrence of three genotypes of Sugarcane yellow leaf virus in a variety
RT   collection in Mauritius";
RL   (in) Unknown A. (Eds.);
RL   PROCEEDINGS OF THE XXVII ISSCT CONGRESS;
RL   Unknown Publisher (2010)
XX
RN   [2]
RP   1-905
RA   Joomun N., Dookun-Saumtally A.;
RT   ;
RL   Submitted (14-SEP-2009) to the INSDC.
RL   Biotechnology, Mauritius Sugar Industry Research Institute, Moka Road,
RL   Reduit, Mauritius
XX
DR   MD5; 2926549f9bd9f75d97301176c63aabaa.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..905
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid S17"
FT                   /isolate="REU-mu SC440"
FT                   /mol_type="genomic RNA"
FT                   /country="Mauritius"
FT                   /isolation_source="leaf"
FT                   /collection_date="03-Aug-2007"
FT                   /note="PCR_primers=fwd_name: REU-F, rev_name: B-REV"
FT                   /db_xref="taxon:94290"
FT   CDS             109..>905
FT                   /codon_start=1
FT                   /transl_except=(pos:697..699,aa:OTHER)
FT                   /product="aphid transmission factor"
FT                   /note="ORF5; stop codon read-through"
FT                   /db_xref="GOA:D0EX81"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D0EX81"
FT                   /protein_id="ACX56070.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT                   FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQL"
FT   CDS             109..699
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q9QQN7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QQN7"
FT                   /protein_id="ACX56071.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT   CDS             140..592
FT                   /codon_start=1
FT                   /product="movement protein P17"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WI47"
FT                   /protein_id="ACX56072.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ   Sequence 905 BP; 258 A; 252 C; 209 G; 186 T; 0 other;
     agcttctagc gggaatcctc atcggtgtta tcatcgcaat tcccctagtg atcatagcgg        60
     cttacctgat attcctcaaa atcagtgcac acatccgagc gatagtgaat gaatacgggc       120
     gctaaccgct cacgaaggaa tgtcagaaga cgcgctaacc gtcgtagaca gactcggcca       180
     gtggtcgtgg tccgggctcc cccaggacct agacgagtac gacgacgtag agcacgtgtt       240
     ggaggaaacg ctgtgcgagg accgggagga agaagcaacc gggatgttct cactttcacg       300
     gttgacgatc tcaaagccaa ctcaaccggg atcctcaaat tcggaccgaa cttatctcag       360
     tacgcagcgt tcaacaatgg cttactcaaa gcctaccatg agtataaaat cacaagtctc       420
     actattcagt ataactcatg ctcctccgac gcaactccag gtgcaatcgc acttgaagtg       480
     gatacatcct gctcccaaac aacaacaggc tccaagatta ctagcttccc cgtcaagagg       540
     aacgccaaga aagtcttccc ggcccccttc atcaggggga aagatttcat gactacgtca       600
     gctgaccaat tttggttgct gtacaaaggg aatggagact cgagcctagc aggacaattc       660
     gtctgccgat ttgaatgttt attccagaat cccaaatagg taggcgacgc tcccccaaca       720
     cccacaccaa caccaacccc acccgccccg accccggcac cggctcctaa gtattttgga       780
     taccaaggag tgccaaataa catcgtgaaa acaagaggta actctgaata tctagatgtg       840
     ggtccgctcg agaatgtgac catgtacctc tggaaagacg aatcgtggag cattgagcaa       900
     ctgaa                                                                   905
//