ID GQ903772; SV 1; linear; genomic RNA; STD; VRL; 3685 BP. XX AC GQ903772; XX DT 15-OCT-2009 (Rel. 102, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Tobacco rattle virus isolate MI-1 segment RNA2, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3685 RX DOI; 10.1007/s00705-010-0609-0. RX PUBMED; 20221838. RA Crosslin J.M., Hamm P.B., Kirk W.W., Hammond R.W.; RT "Complete genomic sequence of a Tobacco rattle virus isolate from RT Michigan-grown potatoes"; RL Arch. Virol. 155(4):621-625(2010). XX RN [2] RP 1-3685 RA Crosslin J.M., Hamm P.B., Kirk W.W., Hammond R.W.; RT ; RL Submitted (11-SEP-2009) to the INSDC. RL USDA-ARS, 24106 North Bunn Road, Prosser, WA 99350, USA XX DR MD5; 7413aeda04ab4925260717ac358556c1. DR RFAM; RF01101; TLS-PK6. XX CC GenBank Accession Numbers GQ903771-GQ903772 represent the complete CC genome of Tobacco rattle virus isolate MI-1. XX FH Key Location/Qualifiers FH FT source 1..3685 FT /organism="Tobacco rattle virus" FT /segment="RNA2" FT /host="Solanum tuberosum (potato)" FT /isolate="MI-1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Mar-2007" FT /db_xref="taxon:12295" FT CDS 523..1125 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D0EWZ0" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:D0EWZ0" FT /protein_id="ACX54062.1" FT /translation="MTDGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITTTPAQASTSNANPSGSATTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1238..2203 FT /codon_start=1 FT /product="37.6 kDa protein 2b" FT /db_xref="UniProtKB/TrEMBL:D0EWZ1" FT /protein_id="ACX54063.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFLLHGHHDSPYYKSGEYTVSRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFIIYRELMRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVYSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVILKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKVKKYPDDYNNEELSAMSKVGDDNDFEHLSPIDKRI FT WGPKDVYHYVKMYYRFPQRNFIDERIVKDKEREDRRASGL" FT CDS 2215..3114 FT /codon_start=1 FT /product="33.6 kDa protein 2c" FT /db_xref="UniProtKB/TrEMBL:D0EWZ2" FT /protein_id="ACX54064.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWEIDFSDLRKLRFSFDSSDTMFGHLRLTFELFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVATNNSYTVTVDEELIRATSFEVVFEWPAPVMASAEMDATLYGFFHSHKAYP FT HMFPITSGFYSSSEQAVRAEEVSVLIKYVPGPLTTGLFSLTGLXTITVDFPVNDDRKVD FT FKGFENSNFRVTGIKALVDENQRVTLTANVNLLAANLPRRCYWLGQIAVMLRKGGVYKR FT IDWTDHLDLVLPSLPSRP" FT misc_feature 3122..3430 FT /note="RNA1-derived sequence" XX SQ Sequence 3685 BP; 1054 A; 645 C; 883 G; 1102 T; 1 other; ataaaacatt gcacctatgg tgttgccccg gccggggtgt gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttaataa gtgtcttcca atacacttta 240 aaccttggac gtgttagcta cgaaagtgtg taaatttaaa aacaattagt cttccgtgat 300 taaggatgat taaggctaaa aacgattgtt aatgattttg gcaatcgcat ccattcgcta 360 tcacaagcga tggtggcatt gacccggaaa ggtctaatct tgcggtcatt cgactggaag 420 aagcataatt atactgattg tgcaactttg tgttactatt ctgacagtga ttcttgctga 480 actactggtt actgtatcac ttgcaatcac tcacgttccg cgatgacaga cggtatgtac 540 gatgaggagt ttgatagcaa agctctcaac gagacatttt cgccatgggt tgaggagaag 600 aactggaaag acgttctaat gaggttgagc gctatgaaat ttgcgttaca agctgacagg 660 gacaaaattc ctggggtttt atcagatctg aagaaagact gtcctttcag tgcttttaag 720 agatttcctg acaaagagat gtggtcgaaa ttgacgaagg aggctgtcat tgctttagct 780 caaattcaag ctgcttcttc ttttaagagg agggcagatg aaaagaatgc cgtttctggg 840 ctgattacta caacacctgc tcaagcttct actagtaacg cgaacccaag tggttcagca 900 accacagtgg tgagaccacc aaggttggac gactcgtctt ttcaagagga tagcttttct 960 tttggtaaat tcgatgacgc ttctactgcg tatcataaag ctctctccta tttggaaggt 1020 ttaaatttga aaccgttata taggagacag tttgagaaat cgtacaacac taggtgggtt 1080 cctgctgccg ctccggtggc gcctgggccg cgtccgaatc cttaattcta agtttgtcag 1140 atactctttc agagggtcac gtgaaaatcg tgaggtggtg tttaccatat aacataatgt 1200 catatgtggg catttaaaat aatcacattg ctgcgagatg gaggagtata ggctttggtc 1260 aaagaatccg gattacttct tttccgacaa tgcaaaactg ttcttactgc atgggcatca 1320 cgatagtccg tattataaga gcggggaata cactgtttct cgttcggtta attggggcga 1380 tcctgaattt cttatggtaa ttggaatgtc tagactttta acttttctat cagaaagaca 1440 tttatgtatc aatgtggacg ggaattgtta ttcgcggatc caagagggtc tgtactacta 1500 tggaaagttt gacatttact cgttgatggt tggaaatagt actcagtggg atgatttcat 1560 aatttataga gagctaatga gagttcatat cgactttcgt aacgtgttag aacttcttca 1620 gctggctggc gctgatagag gtcgactgtt tcctaggttg cgagaattgt tagacctcga 1680 aaaagtcgtt tattcgacgt caaaactacc ggacaaagat attacgctga tgatacaaaa 1740 tctcaaagat cagttgtctg cgacgacttt agagaacgac aatttgaaga aagagatcgt 1800 catactgaag agtcgagtcg aagctgcaca agcgcaagct cagactagac atctcgaaaa 1860 cgacgatctg aagaaacaaa tcgagtcgtt gaagaagaaa accgcagatg tgggaagtat 1920 ctctgaagct attgttcaag taccggtggt gttgcctgcg aagccgactc ctaaagttaa 1980 gaagtatccc gatgattaca acaacgaaga actgagtgca atgtcaaagg taggcgatga 2040 taatgatttc gagcatttat caccaattga caaaagaatt tggggcccta aggatgtata 2100 tcattatgtt aagatgtatt acagattccc acagaggaat ttcatagacg aacgcattgt 2160 caaagacaag gaaagagaag acagacgcgc aagcggtctg tagaccagca taaaatgacg 2220 agcgcatcca tctggaccct aagacagggt gattacccga agggttctat gttaattcgt 2280 aggagggtta aaaattctgt cttgactgga aaaggtggtt acgtggatct ggacggtaat 2340 gtagcggtcg gaactggatg gcgatgggaa atcgacttta gtgacctgcg taagctgcga 2400 ttttcgtttg attcttcaga tactatgttt ggtcatttac ggttaacttt tgaactattc 2460 actacggtga attttaagtc aatagcctct tataagcacg aaggttacaa gtcgtcaccg 2520 tcgaataagc tgttgcttct caacaaggta gcgaccaaca atagttatac ggtgacggta 2580 gatgaagaac tcataagagc gacttctttt gaagttgtct tcgaatggcc tgcaccagtg 2640 atggcaagtg ccgagatgga tgcgactctt tatgggttct tccattctca caaggcttac 2700 cctcatatgt ttccgataac tagtggtttc tactccagtt ctgagcaagc tgtgcgtgct 2760 gaagaagtga gtgtgctaat taaatacgtg ccgggacctt taaccaccgg tttgttctcg 2820 ttgactgggt tgtwaacaat aacagtggat tttcctgtaa acgatgacag aaaggtagat 2880 tttaaaggtt ttgagaattc caattttcga gtcactggca taaaagcact cgttgatgaa 2940 aatcaaagag ttactttaac ggccaacgtc aatttgttag cggcaaatct acctcgacgc 3000 tgttactggc tagggcaaat tgctgttatg ttaaggaaag gtggtgtcta caaacgtata 3060 gattggaccg atcacttgga cttagtgctt ccttcgctac cttcaagacc ttaagggttg 3120 acgtaggtgt gcggaaaata attgtggatg gtttgtctgt gttattatta acgattttac 3180 ttttgatgtg tataattgtt gcggccgtag tcaccttgaa aagtgtcgta aacgctttga 3240 agcaagaaat cgagaaatct ggaaacagat tgaacgagtt cgagctgaaa aggcatttac 3300 tacggttaaa aagtctcgaa attcgaaacc ctctaagaaa attttcaaag agagagaaga 3360 ttttgggaca ccaaaaagat tttaaagaga tgatgttcct ttcggaattg atcagttgtt 3420 tgctttttga ttttatttta aattgttatc tgtttctgtg tatagactgt ttgagattgg 3480 cgtttggccg actcattgtc ttaccatagg ggaacggact ttgtttgtgt tgttatttta 3540 tttgtatttt attaaaattc tcaatgatct gaaaaagctt tgttgctaag agattattgg 3600 ggggtgagta agtactttta aagtgatgat ggttacaaag gcaaaagggg ttaaacccct 3660 cgcctacgta agcgttatta cgaag 3685 //