ID GQ903771; SV 1; linear; genomic RNA; STD; VRL; 6791 BP. XX AC GQ903771; XX DT 15-OCT-2009 (Rel. 102, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Tobacco rattle virus isolate MI-1 segment RNA1, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6791 RX DOI; 10.1007/s00705-010-0609-0. RX PUBMED; 20221838. RA Crosslin J.M., Hamm P.B., Kirk W.W., Hammond R.W.; RT "Complete genomic sequence of a Tobacco rattle virus isolate from RT Michigan-grown potatoes"; RL Arch. Virol. 155(4):621-625(2010). XX RN [2] RP 1-6791 RA Crosslin J.M., Hamm P.B., Kirk W.W., Hammond R.W.; RT ; RL Submitted (11-SEP-2009) to the INSDC. RL USDA-ARS, 24106 North Bunn Road, Prosser, WA 99350, USA XX DR MD5; 4bfe19393d5a0348694a685384244778. DR RFAM; RF01101; TLS-PK6. XX CC GenBank Accession Numbers GQ903771-GQ903772 represent the complete CC genome of Tobacco rattle virus isolate MI-1. XX FH Key Location/Qualifiers FH FT source 1..6791 FT /organism="Tobacco rattle virus" FT /segment="RNA1" FT /host="Solanum tuberosum (potato)" FT /isolate="MI-1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Mar-2007" FT /db_xref="taxon:12295" FT CDS 203..5326 FT /codon_start=1 FT /transl_except=(pos:3764..3766,aa:OTHER) FT /product="194 kDa readthrough protein" FT /note="RNA polymerase; translates through leaky termination FT codon" FT /db_xref="GOA:D0EWY6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D0EWY6" FT /protein_id="ACX54058.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMIKERRTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTRVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELIKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLTDVLGLISRKLWKQFANKIAVGGFVGMVGTLIGLYPRKVLTWAKDTPNGP FT ELSYENSHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSS FT VRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEVEIDE FT IVSAFSAECERRETSGTKVLCKPLTPPGFENVLPTVKPLVNKGKTVKRVDYFQVMGGER FT LPKRPVVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRGGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMSDWSGFLEVAVWERGMLVNDFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPVDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSGTITDLEMWYDALFPG FT NSLRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDKFAENETFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSDRTLCALLSELPLKKAVMVTYGGDDSLIAFPKGTQFTDPCPKLATKWNFECKIFK FT YDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNY FT MVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTALCTLFRDEKDKELNPSQVDWKKA FT QRAVSNFYDW" FT CDS 203..3766 FT /codon_start=1 FT /product="134 kDa protein" FT /note="part of RNA replicase; contains helicase activity FT and nucleotide binding motifs" FT /db_xref="GOA:D0EWY7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D0EWY7" FT /protein_id="ACX54059.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMIKERRTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTRVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELIKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLTDVLGLISRKLWKQFANKIAVGGFVGMVGTLIGLYPRKVLTWAKDTPNGP FT ELSYENSHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSS FT VRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEVEIDE FT IVSAFSAECERRETSGTKVLCKPLTPPGFENVLPTVKPLVNKGKTVKRVDYFQVMGGER FT LPKRPVVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRGGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMSDWSGFLEVAVWERGMLVNDFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPVDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVL" FT CDS 5328..6086 FT /codon_start=1 FT /product="29 kDa protein" FT /note="putative movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:D0EWY8" FT /protein_id="ACX54060.1" FT /translation="MEDKSLATLKKKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRET FT VLNHVGGKKSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIDLLDS FT RLTEKRKKGKTIQRFKARACDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKY FT DGPYRPATTKPKSLLSSEDVKGASKKKNSS" FT CDS 6111..6536 FT /codon_start=1 FT /product="16 kDa protein" FT /note="small cysteine-rich protein" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:D0EWY9" FT /protein_id="ACX54061.1" FT /translation="MTCALKGCVNEVTVLAHETCSIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVIINDFTFDVYNCCGRSHLEKCRKRFEARNREIWKQIERVRAEKAFTTVKKS FT RNSKPSKKIFKEREDFGTPKRFLRDDVPFGIDQLFAF" XX SQ Sequence 6791 BP; 1979 A; 1135 C; 1738 G; 1939 T; 0 other; ataaaacatt tcaatccttt gaacgcggta gaacgtgcta attggatttt ggtgagaacg 60 cggtagaacg tacttatcac ctacagtttt attttgttac tctttttggt ttaatctatc 120 cagcttagta ccgagtgggg gaaagtgact ggtgtgccta aaaccttttc tttgatattt 180 tgtaaagtta tatacaagta caatggcaaa cggtaacttc aagttgtctc aattgcttaa 240 tgtggacgag atgtctgctg agcaaaggag tcatttcttt gacttgatgc tgactaaacc 300 tgattgtgag atcgggcaaa tgatgcaaag agttgttgtt gataaagtcg atgacatgat 360 taaagaaaga aggactaagg atccagtgat tgttcatgag gttctttctc agaaagaaca 420 gaacaagtta atggaaattt atccggaatt caatatagtg ttcaaagacg acaaaaacat 480 ggttcatgga tttgcagctg ctgaacgaaa actacaagcc ttgttgcttt tagatagagt 540 tcctgctctg caagaggtgg atgacattgg tggtcaatgg tcgttttggg taactagagg 600 tgagaagagg attcattcct gttgtccaaa tctagatatt cgtgatgacc agagagaaat 660 ttctcgacaa atatttctta ctgctattgg cgatcaagcc agaagtggta aaagacagat 720 gtcggagaat gagctgtgga tgtacgatca atttcgtgaa aatattactg cacctaacgc 780 tgttagatgc aataatacat atcagggttg tacatgtaga gggttttctg atggtaagaa 840 gaaaggtgcg cagtacgcaa tagctcttca cagcctgtat gacttcaagt tgaaagactt 900 gatggctact atggttgaga agaaaactag agtggttcac gctgctatgc tttttgctcc 960 tgagagtatg ttagtggacg aaggtccatt accttctgtt gatggttact acatgaagaa 1020 gaacgggaag atctatttcg gttttgagaa agatccttca ttttcttaca ttcatgactg 1080 ggaagagtac aagaagtatc tgctggggaa gccagtgagt taccaaggga atgtgttcta 1140 cttcgaaccg tggcaagtga gaggagacac aatgcttttt tcgatctaca ggatagctgg 1200 agttccgagg cggtctctat catcgcaaga gtactaccga agaatatata tcagtagatg 1260 ggaaaacatg gttgttgtcc caattttcga tctggttgaa tcaacgcgag agttgatcaa 1320 gaaagacctg tttgtggaga aacaatttat ggacaagtgt ttggattaca tagctaggtt 1380 gtctgaccag cagctgacca taagcaatgt taaatcatac ttgagttcaa acaattgggt 1440 cttattcata aatggggcgg ctgtgaagaa caagcaaagt gtagattctc gagatttaca 1500 gttgttggct caaactttgc tggtgaagga acaagtggcg agacctgtca tgagggagtt 1560 gcgtgaggca attctgactg aaacgaagcc tatcacatca ttgactgacg tactaggctt 1620 aatatcaaga aaactgtgga aacagtttgc taacaagatt gcagtcggcg gatttgttgg 1680 tatggttggt actctaattg gattatatcc aaggaaggta ttgacctggg cgaaggacac 1740 accaaatggt ccagaactga gttacgagaa ctcgcacaaa accaaggtga tagtattttt 1800 gagtgttgtg tatgccattg gaggaatcac gcttatgcgt cgagacatcc gagatggact 1860 ggtgaaaaaa ctatgtgata tgtttgatat taaacggggg gcccatgtct tagatgttga 1920 gaatccgtgc cgctattacg aaatcaatga tttctttagc agtctgtatt cggcatctga 1980 gtccggtgag accgttttac cagatttatc cgaggtaaaa gccaagtctg ataagctatt 2040 gcagcagaag aaagaaatcg ctgatgagtt tcttagtgca aaattttcta actattctgg 2100 cagttcggtg agaacttccc cgccatcggt ggtcggttca tctagaagcg gactgggttt 2160 gctgttggaa gacagtaacg tactaaccca agctagagtt ggagtttcaa gaaaagtaga 2220 cgatgaggag atcatggagc agtttctaag tggtcttatt gacactgaag tggagattga 2280 cgagattgtt tcggcctttt cggctgagtg tgaaaggagg gaaacaagcg gtacaaaggt 2340 gttgtgcaaa cctttaacac caccaggatt tgagaacgtg ttaccaactg tcaaaccttt 2400 ggttaacaag ggtaaaacgg tcaaacgtgt cgattacttc caagtgatgg gaggtgaaag 2460 attaccaaaa aggccggttg tcagtggaga caattctgtg gacgctagaa gagagttcct 2520 gtactacttg gatgcagaga gagttgctca aaatgatgaa attatgtctc tgtatcgtga 2580 ctattcgagg ggagttattc gaggtggagg tcagaattac ccgcacggac tgggagtgtg 2640 ggatgtggag atgaagaact ggtgtatacg tccagtggtc accgaacacg cttacgtgtt 2700 ccaaccagac aaacgtatga gtgactggtc gggattttta gaagtggctg tctgggaacg 2760 tggtatgttg gtcaacgact tcgcagtcga acgaatgagt gattatgtca tagtatgcga 2820 tcagacttat ctttgcaata acaggttgat cttggacaat ttaagtgccc tagatctagg 2880 accggtcgac tgttcttttg aattagtcga tggtgtacct ggttgtggta agtcgacaat 2940 gattgtcaac tcagctaatc cttgcgtcga tgtggttctt tctaccggaa gagccgcaac 3000 cgacgacttg atcgagagat tcgcgagcaa aggttttcca tgcaagttaa agcggagagt 3060 gaagacggta gactcctttt tgatgcattg cgtcgacggt tctttgaccg gagacgtgtt 3120 gcattttgat gaagctctaa tggctcatgc tggtatggtt tacttttgcg ctcaaattgc 3180 tagagcaaag agatgtatct gtcaagggga tcaaaaccaa atttccttca aacctagagt 3240 gtctcaagtt gacttgaggt tctcgagttt agtcggaaag tttgatgttg ttactgaaaa 3300 gagagagacg tacagaagtc cggccgatgt ggccgcagta ctgaataagt tctacactgg 3360 agatgtcaga acacataatg caactgctaa ttcaatgaca gtaaggaaga ttgtgtcgaa 3420 ggaacaggtt tctttgaagc ctggtgccca atacataact ttcctgcaat ctgagaagaa 3480 agagttgatg aatttgttgg cgttgaggaa ggtggcggct aaggtgagca cagtgcacga 3540 gtcccaaggg gaaacattta aagatgtggt cctagttagg actaaaccta cagatgattc 3600 aattgctaga ggacgtgaat atatgatcgt ggcactgtcg cgtcacacac aatcacttgt 3660 gtacgagacg gtaaaggagg atgatgtgag caaagaaatc agagaaagtg ctgcgcttac 3720 aaaggcagct ttggcaagat ttttcgtcac agaaaccgtc ttatgacggt ttcggtctag 3780 gtttgatgtc ttcagacatc atgaagggcc ttgcgctgtc ccagattcag gtacgattac 3840 ggacttggaa atgtggtacg acgctttgtt tcctggaaat tcattgagag actcaagcct 3900 agacgggtat ctggtggcaa cgactgactg caacctgcgg ttagacaatg ttacaatcaa 3960 aagtggaaat tggaaagaca agtttgcgga aaatgaaacg tttctgaaac cggttattcg 4020 tactgcgatg cctgacaaaa ggaaaactac tcagttggag agtttgttgg cgctgcagaa 4080 aaggaaccaa gcagcacctg atctgcaaga gaatgtgcat gcgacagttc tgatcgaaga 4140 gacgatgaag aagctgaaat ctgttgtcta cgatgtgggg aagattcggg ctgatcctat 4200 tgttaacagg gctcaaatgg agagatggtg gcggaaccaa agcacagcgg ttcaggctaa 4260 ggtagtagca gatgtgcgag aattacatga gattgactat tcgtcttaca tgtacatgat 4320 caagtctgat gtgaaaccta agactgacct gacacctcaa tttgaatatt cggctttgca 4380 gactgttgtg tatcatgaga agttgattaa ctcgttgttt ggtccaatct tcaaagagat 4440 caatgaacgc aagttggatg ctatgcaacc acactttgtg ttcaacacaa gaatgacatc 4500 gagtgactta aacgatcgag tgaaattttt aaacacagag gcggcttacg actttgtcga 4560 aatagacatg tctaaattcg acaagtcggc aaatcgtttc catttacagt tgcagttgga 4620 gatttacagg ttgtttgggt tagatgagtg ggcggctttc ctttgggagg tgtcgcacac 4680 tcaaactact gtgagagaca ttcaaaatgg catgatggca catatctggt accaacaaaa 4740 aagtggagat gctgatactt ataacgctaa ttccgatagg acgctgtgtg cgcttctgtc 4800 tgagttacca ctgaagaaag cagtcatggt tacatatggt ggagatgatt cgttgatcgc 4860 attccctaag ggaacgcaat tcaccgaccc gtgtccaaag ttggctacta agtggaattt 4920 tgagtgcaag atttttaagt acgacgtccc aatgttctgc gggaagtttt tgcttaaaac 4980 gtcgtcatgt tacgagtttg tgccagaccc tgttaaagtt ctgacaaagt tggggaagaa 5040 gagcataaag gatgtgcaac atttagctga gatttatatc tcactgaatg attccaatag 5100 agctcttggg aactacatgg tagtgtccaa actttccgag tctgtttcag accggtattt 5160 gtacaaaggt gattctgtcc atgcgctgtg tgcgctatgg aagcatatta agagttttac 5220 agctctgtgt acattattcc gagacgaaaa ggataaggaa ttgaacccat ctcaggttga 5280 ttggaagaag gcacaaaggg ctgtgtcaaa tttttacgac tggtaagatg gaagacaaat 5340 cattggctac gcttaagaag aagactttcg aggtttcgaa gttttcgaac ttaggtgcca 5400 ttgaactgtt tgtggatggt aggaggaaga gaccgaagta tttccataga agaagagaga 5460 ctgttctaaa tcatgttggt ggaaagaaga gtgaacataa gttagacgtt ttcgaccaaa 5520 gagactataa gatgattaaa tcttacgcgt ttttgaagat agtaggtgtg caacttgttg 5580 ttacatcaca tctacctgcg gacacgcccg ggtttattca aatcgatttg ttagattcga 5640 gacttactga gaaaagaaag aaaggaaaga ctattcagag attcaaagct cgagcttgcg 5700 ataattgttc agttgcgcag tacaaggttg aatacagtat ttctacacaa gagaatgtac 5760 tcgatgtctg gaaggtgggt tgtatctctg agggcgtacc ggtctgtgac ggtacatacc 5820 ctttcagtat tgaagtgtcg ctcatttggg ttgctactga ttcgactagg cgtcttaatg 5880 tggaagaact gaacagttca gactacatcg aaggcgattt taccgatcag gaagttttcg 5940 gtgagttcat gtctttgaaa caagttgaga tgaagacgat tgaggcgaag tatgatggtc 6000 cttacagacc agctactact aaaccaaaat cattgttgtc tagtgaagat gttaagggag 6060 cgtctaaaaa gaaaaactcg tcttaatgca taaagaaatt tattgtcact atgacgtgtg 6120 cactcaaggg ttgtgtgaat gaagtcactg ttcttgctca tgagacgtgt agtattggtc 6180 atgctaacaa gttgcgaaag caagttgctg acatggtcgg tgtcacacgt aggtgtgcgg 6240 aaaataattg tggatggttt gtctgtgtta ttattaacga ttttactttt gatgtgtata 6300 attgttgcgg ccgtagtcac cttgaaaagt gtcgtaaacg ctttgaagca agaaatcgag 6360 aaatctggaa acagattgaa cgagttcgag ctgaaaaggc atttactacg gttaaaaagt 6420 ctcgaaattc gaaaccctct aagaaaattt tcaaagagag agaagatttt gggacaccaa 6480 aaagattttt aagagatgat gttcctttcg gaattgatca gttgtttgct ttttgatttt 6540 attttaaatt gttatctgtt tctgtgtata gactgtttga gattggcgtt tggccgactc 6600 attgtcttac cataggggaa cggactttgt ttgtgttgtt attttatttg tattttatta 6660 aaattctcaa tgatctgaaa aagctttgtt gctaagagat tattgggggg tgagtaagta 6720 cttttaaagt gatgatggtt acaaaggcaa aaggggttaa acccctcgcc tacgtaagcg 6780 ttattacgcc c 6791 //