ID GQ865546; SV 1; linear; genomic DNA; STD; VRL; 2740 BP. XX AC GQ865546; XX DT 22-SEP-2009 (Rel. 102, Created) DT 22-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate ToLCV-186b segment DNA A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Pandey P., Dhande G., Mukherjee S.K.; RT ; RL Submitted (02-SEP-2009) to the INSDC. RL Plant Molecular Biology, International Center for Genetic Engineering and RL Biotechnology, Aruna Asaf Ali Marg, New Delhi, Delhi 110067, India XX DR MD5; 1e2f830898341e7c94b55199213a170c. DR EuropePMC; PMC3125359; 21676270. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /host="tomato; variety Pusa Ruby" FT /isolate="ToLCV-186b" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Jan-2009" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:C9EJV9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C9EJV9" FT /protein_id="ACV83733.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKIYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHWPRHKRKGLDKQADDQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C9EJW0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C9EJW0" FT /protein_id="ACV83734.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIGRVTKGKAWT FT NRPMTRKPRMYRMYRDPDVTRGCEDPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT misc_feature complement(310..795) FT /note="nonfunctional AC5 due to mutation" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:C9EJW1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C9EJW1" FT /protein_id="ACV83735.1" FT /translation="MITDSRTGEYITADRAESGVYTWDIRNPLYFKILEQDGRPFLTQH FT DIITIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="silencing suppressor" FT /db_xref="GOA:C9EJW2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C9EJW2" FT /protein_id="ACV83736.1" FT /translation="MQSSSHSRNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYTSIN FT CHDHGFTHRGIHHCGSCREWRIYLGYSKSPVFQNFGTGRQTIPNTARHNNDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication initiator protein" FT /db_xref="GOA:C9EJW3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C9EJW3" FT /protein_id="ACV83737.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPSSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVVEWGVFQIDGRSARGGQKTANDAYAQAINTGNKNDALKVLKEFAPKDYVLQFH FT NLITNLDRIFQPRSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWTIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C9EJW4" FT /protein_id="ACV83738.1" FT /translation="MGHRISMFLSNSKENSNARITDSSTWCPQVGQHISIRTFRELNQH FT RTSKRTSTKTETS" XX SQ Sequence 2740 BP; 759 A; 591 C; 602 G; 788 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg acctcaacca atgaaattcg ggctacatgg 60 cttctataat gcatatggag caataaatag acttgcccac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagagaaga tctattcccc agacacagtc ggttacgatc 240 ttgtccgaga tctcattctc gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaagta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattggccgc gtcacaaaag gaaaggcctg gacaaacagg 420 ccgatgacca gaaaacccag aatgtacaga atgtatagag atcccgacgt gacaaggggc 480 tgtgaagacc cctgtaaagt gcagtctttt gaatcgaggc acgacgtatc tcatatcggt 540 aaagtcatgt gtgttagtga tgttacccga ggaaccggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctgt ctacgtgctg ggaaagatat ggatggatga aaacatcaag 660 acgaaaaacc atactaacag tgtcatgttt tttttagtcc gtgaccgtcg tcctacagga 720 tccccacagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaaca 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc aactgtgacc 840 ggaggaacat acgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcgtta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctactttt atgattcggt cacaaattaa taaatatcta gttttatatc atatgaagtc 1080 catacatcaa ttgttcgctc caatacatta tccaagacat gataaactgc tcttatcaca 1140 ttataaattc ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cgttattatg 1320 tcgtgctgtg ttaggaatgg tctgccgtcc tgttccaaaa ttttgaaata caggggattt 1380 cgaatatccc aggtatatac gccactctct gcacgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tgtgtaatac gaacaaccac acggtagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcctcgagt gtgatgaaga ctgcattctt gattgtccac tgcttcagtg 1620 ctgcattttt ttcttcatcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaactctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tctagatgtc 1860 cacacaagta attgtgtggt cctaagcaac gagcccacat tgttttgcca gtcctactat 1920 ccccctctat gactacgctt attggtctaa aaggccgcgc agcggcacac accacattcg 1980 acgagaccca atcgacgagt tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaat ctcggaacga ggttgaaaaa tgcgatctaa atttgtaatt aaattgtgaa 2100 actgcagaac ataatccttt ggtgcaaatt cctttaatac tttcaaggca tcatttttat 2160 ttcctgtgtt aatcgcctga gcatatgcat cgtttgctgt tttctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccact ctacgacgtc tccgtctttg tcgatgtacg 2280 ctttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggacac caagtcgaag aatctgttat tcttgcattg gaattttcct tcgaattgga 2400 taagaacatg gatatgcggt gacccatcct catgaagctc tcgacatatc ttgatgaatt 2460 tcttcgaact gggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgtgagg aagtagtttt ttgcatttat tctaaaacga cttggcggag 2580 ccataaaaca tgtcgtttcg atctggtgtc tctcaacttt ctctatgtaa ttggtgtctg 2640 gagtcccata tataggtaag acaccatatg gcagaattgt aatttcagaa aagaaattac 2700 tttaattcaa attcactaaa gcggccattc gtataatatt 2740 //