Dbfetch

Dbfetch

ID   GQ853604; SV 1; linear; genomic RNA; STD; VRL; 807 BP.
XX
AC   GQ853604;
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DT   24-NOV-2009 (Rel. 102, Created)
DT   25-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE   Potato virus Y isolate PP003_119_85 coat protein gene, partial cds.
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KW   .
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OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-807
RX   DOI; 10.1007/s00705-009-0525-3.
RX   PUBMED; 19862472.
RA   Visser J.C., Bellstedt D.U.;
RT   "An assessment of molecular variability and recombination patterns in South
RT   African isolates of Potato virus Y";
RL   Arch. Virol. 154(12):1891-1900(2009).
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RN   [2]
RP   1-807
RA   Visser J.C., Bellstedt D.U.;
RT   ;
RL   Submitted (28-AUG-2009) to the INSDC.
RL   Biochemistry, Stellenbosch University, Lab 165, Department of Biochemistry,
RL   JC Smuts Building, Van der Bijl Street, Stellenbosch, Western Cape 7600,
RL   South Africa
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DR   MD5; 8e23590c77ef47a8db76e166b7f9e7a0.
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FH   Key             Location/Qualifiers
FH
FT   source          1..807
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /strain="recombinant PVYN/PVYO"
FT                   /isolate="PP003_119_85"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /db_xref="taxon:12216"
FT   CDS             <1..807
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:D1L8E4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D1L8E4"
FT                   /protein_id="ACZ26365.1"
FT                   /translation="MANDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTV
FT                   PRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDI
FT                   GETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAH
FT                   FSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMK
FT                   AAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 807 BP; 280 A; 163 C; 189 G; 175 T; 0 other;
     atggcaaatg acacaatcga tgcaggagga agcactaaga aggatgcaaa acaagagcaa        60
     ggtagcattc aaccaaatct caacaaggaa aaggaaaagg acgtgaatgt tggaacatct       120
     ggaactcata ctgtgccacg aattaaagct atcacgtcca aaatgagaat gcccaagagt       180
     aaaggtgcaa ctgtactaaa tttggaacac ttactcgagt atgctccaca gcaaattgac       240
     atctcaaata ctcgagcaac tcaatcacag tttgatacgt ggtatgaagc ggtacaactt       300
     gcatacgaca taggagaaac tgaaatgcca actgtgatga atgggcttat ggtttggtgc       360
     attgaaaatg gaacctcgcc aaacatcaac ggagtttggg ttatgatgga tggagatgaa       420
     caagtcgaat acccactgaa accaatcgtt gagaatgcaa aaccaacact taggcaaatc       480
     atggcacatt tctcagatgt tgcagaagcg tatatagaaa tgcgcaacaa aaaggaacca       540
     tatatgccac gatatggttt agttcgtaat ctgcgcgatg gaagtttggc tcgctatgct       600
     tttgactttt atgaggtcac atcacgaaca ccagtgaggg ctagggaagc gcacattcaa       660
     atgaaggccg cagcattgaa atcagcccaa tctcgacttt tcgggttgga cggtggcatc       720
     agtacacaag aggagaacac agagaggcac accaccgagg atgtctctcc aagtatgcat       780
     actctacttg gagtcaaaaa catgtga                                           807
//