ID   GQ847545; SV 1; linear; genomic DNA; STD; VRL; 1138 BP.
XX
AC   GQ847545;
XX
DT   06-OCT-2009 (Rel. 102, Created)
DT   06-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Jatropha mosaic India virus-[Lucknow] strain 2 segment DNA A coat protein
DE   (AV1) gene, partial cds; replication enhancer protein (AC3) and
DE   transcriptional activator protein (AC2) genes, complete cds; and
DE   replication-associated protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Lucknow]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1138
RA   Snehi S.K., Raj S.K., Pathre U.;
RT   "Molecular characterization of a Begomovirus causing mosaic disease on
RT   Jatropha curcas L. in Uttar Pradesh, India";
RL   Unpublished.
XX
RN   [2]
RP   1-1138
RA   Snehi S.K., Raj S.K., Pathre U.;
RT   ;
RL   Submitted (24-AUG-2009) to the INSDC.
RL   Plant Molecular Virology Lab, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U.P. 226001, India
XX
DR   MD5; 6f51ebec4e184f3b5b8ff58b647b3d36.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1138
FT                   /organism="Jatropha mosaic India virus-[Lucknow]"
FT                   /segment="DNA A"
FT                   /host="Jatropha curcas L."
FT                   /strain="2"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Lucknow"
FT                   /collected_by="S. K. Snehi"
FT                   /collection_date="Jun-2009"
FT                   /identified_by="S. K. Raj"
FT                   /clone="SKS-3"
FT                   /db_xref="taxon:569949"
FT   gene            <1..357
FT                   /gene="AV1"
FT   CDS             <1..357
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="CP; involved in virion encapsidation"
FT                   /db_xref="GOA:D0EKA7"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D0EKA7"
FT                   /protein_id="ACX31143.1"
FT                   /translation="LVRDSRAVEKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT                   STVTGGQYASKEQAIVRRFFRVNNYVVYNKQEAGKYENHTENALMLYMACTHASNPVYA
FT                   TLKIRIYFYDSVSN"
FT   gene            complement(354..758)
FT                   /gene="AC3"
FT   CDS             complement(354..758)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn; increases viral replication"
FT                   /db_xref="GOA:D0EKA8"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D0EKA8"
FT                   /protein_id="ACX31144.1"
FT                   /translation="MDSRTGELITAAHAMNGVYTWEVPYPRYFKIIDHSSRPFLMEHDI
FT                   ITVQIRSNHNLRKALGLHQCWMDFKIWRTLRPQTVRYLRVFKYHVLRYLDMLGVICINT
FT                   VVRPVEQVLYSVLTGTDSIEQSNLIKFKIY"
FT   gene            complement(499..906)
FT                   /gene="AC2"
FT   CDS             complement(499..906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /note="TrAP"
FT                   /db_xref="GOA:D0EKA9"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D0EKA9"
FT                   /protein_id="ACX31145.1"
FT                   /translation="MRPSSTSTGQTTPMPIKDQNRAAKRRAIRRRRVDRNCGCSYYEHI
FT                   NCHNHGFTHRGTHHCSSCDEWRLYLGGSISPLFQDHRPQQPAVPDGTRHNNRADTVQPQ
FT                   PEESVGTTSMLDGFQNLENVTASDRALLEGI"
FT   gene            complement(836..>1138)
FT                   /gene="AC1"
FT   CDS             complement(836..>1138)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /note="Rep; involved in virus replication"
FT                   /db_xref="UniProtKB/TrEMBL:D0EKB0"
FT                   /protein_id="ACX31146.1"
FT                   /translation="KDAGYNGIDDVDPHYLKHFKEVMGAQKNWQNDTKYGKPVQNKGGI
FT                   PTIFLCNPGPNSSYKKFLEKPKKRALKAWAIRNATFIYLDGPNNSNADQGSKQGS"
XX
SQ   Sequence 1138 BP; 262 A; 253 C; 279 G; 344 T; 0 other;
     ctcgtcaggg atagtagggc cgtagagaaa ccccaagatt ttggtgaggt gttcaacatg        60
     ttcgataacg agcccagtac tgctacggtt aaaaacatgt accgtgatcg gtaccaggtg       120
     ttaaggaagt ggagttccac tgtcactggt ggtcagtatg cgagcaaaga gcaggcaata       180
     gttaggcgtt tttttagggt taataattat gttgtgtata ataagcaaga ggctggtaag       240
     tacgaaaacc atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac       300
     cccgtgtatg ctacgcttaa gatacggatc tacttctacg attcagtatc caattaataa       360
     attttaaatt ttattaaatt tgactgctca atactgtcag tacctgtgag tacactgtac       420
     aatacttgct ctacgggtct aacgaccgta tttatacata tgacccctaa catgtccagg       480
     tatctgagta cgtggtactt aaataccctc aagtaacgca cggtctgagg ccgtaacgtt       540
     ctccagattt tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg       600
     ttggaccgta tctgcacggt tattatgtcg tgttccatca ggaacggccg gctgctgtgg       660
     tctatgatct tgaaatagcg gggatatgga acctcccagg tatagacgcc attcatcgca       720
     tgagctgcag tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgctc       780
     gtagtacgag cacccgcagt tgcggtctac tctccgtcgc cggatggccc tacgcttagc       840
     tgccctgttt tgatccttga tcggcattgg agttgtttgg cccgtcgagg tagatgaagg       900
     tcgcatttct tattgcccaa gccttcaatg cccttttttt tggcttttca aggaattttt       960
     tatagctcga attgggccca ggattgcaca ggaagatagt gggtatccca cctttatttt      1020
     gaaccggctt tccgtatttg gtgtcgtttt gccagttctt ctgggccccc atgacttcct      1080
     tgaagtgctt taggtagtgg ggatctacgt catcaatgcc gttgtacccc gcgtcctt        1138
//