ID GQ845002; SV 2; linear; genomic RNA; STD; VRL; 3983 BP. XX AC GQ845002; XX DT 27-SEP-2009 (Rel. 102, Created) DT 11-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sowbane mosaic virus culture-collection ATCC:PV-109, complete genome. XX KW . XX OS Sowbane mosaic virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-3983 RA Chen Q., Li G., Yu F., Chen H., Liao F., Chen H., Zhu S.; RT ; RL Submitted (25-AUG-2009) to the INSDC. RL Plant Quarantine Lab, Xiamen Entry-Exit Inspection and Quarantine Bureau, RL No. 2165, Jiangang Road, Haicang District, Xiamen 361026, China XX RN [2] RC Sequence update by submitter RP 1-3983 RA Chen H., Chen Q., Dong J., Li G., Zhu S., Chen H.; RT ; RL Submitted (29-JAN-2010) to the INSDC. RL Plant Quarantine Lab, Xiamen Entry-Exit Inspection and Quarantine Bureau, RL No. 2165, Jiangang Road, Haicang District, Xiamen 361026, China XX DR MD5; 28988700e24c425582e2d740e6e7d44e. DR EuropePMC; PMC3791421; 23830075. XX CC On Mar 10, 2010 this sequence version replaced gi:259023886. XX FH Key Location/Qualifiers FH FT source 1..3983 FT /organism="Sowbane mosaic virus" FT /host="Chenopodium quinoa" FT /mol_type="genomic RNA" FT /collected_by="HE Waterworth" FT /db_xref="taxon:378833" FT /culture_collection="ATCC:PV-109" FT misc_feature 1..78 FT /note="5' noncoding region" FT CDS 79..573 FT /codon_start=1 FT /product="P1" FT /note="virus systemic movement; RNA silencing suppressor" FT /db_xref="UniProtKB/TrEMBL:D3W784" FT /protein_id="ADD64687.1" FT /translation="MKFTLNLRSIGPNQIETSKTYIPSCEFFPDCDFEVNSLAALVRNV FT KSFGVKHWTAGPSVRLWNLYESAFQDHAKHHYIAFEVVCAFCDQVFQTTPTPSSQISGC FT WPVFVDGVNRGIVTTARRKEAEVVQGKPDCYIVRFSSTCKECIVHRLATSYCSSAFQLE FT Q" FT CDS 513..2171 FT /codon_start=1 FT /product="P2a" FT /note="transmembrane domains; serine protease; FT genome-linked protein" FT /db_xref="GOA:D3W785" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D3W785" FT /protein_id="ADD64688.1" FT /translation="MHRSPFGYLLLLISLPAGAVTYDCVRGDCPAGPNCLMMALMTLFT FT TGMWWIVSLSLYWIERQRYRSAEEKISRPKRLRLIGDPYLDPCDGIVGKILDDCTGSVQ FT EVVIQPKWWRFINMSSPTVNQDEDNECAILGNSYPKVEPHREPGSFVLLKVNEEVVGAG FT CRVIYDGGDYLLTAHHVWSQAPNHIAKGGKTVEISTEMKPHLSSKNKVLDFCLVPIPAA FT VWSNLGVKSSKIASLHQRSNVTVYGGTASKMLLSSFGVAEADDNPLRIIHKASTARAWS FT GSPLYNSNGLVLGVHLGYDQLGSTNRAVNIGYVLRFTTSNETAPPDLNFIEITEDEAVD FT RPSFDEYEIEGFGKIKTRAREYYIPRDKDWNKYDDEDDDAFFDVPVALWLNSNETIEKP FT LNFKGAASSPRLPPLLSSGITSGKAEDTIRKESDYNLLVGRLVSLERALEKLSQSVLNL FT QVRPSQSCLTTTGQHEDQKLSLARSSSKLSGSDAPSPQKTSPAVATSSPAGTQLPGPVV FT ASEPTNGLGQQSKKKSRGSRRKGKKSAKTPAPAAR" FT CDS <1703..3301 FT /codon_start=1 FT /product="P2b" FT /note="viral replicase" FT /db_xref="GOA:D3W786" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D3W786" FT /protein_id="ADD64689.1" FT /translation="EAFKLQRGRKFSALAALIELGNYFWESGGHYPQGVGLQFVGRSTC FT LFRESSRKALSERFKLASETFPELLDYNWPARGSKAELGSLLLQAERFRCTEPPENLAS FT CCDKLASRYPVTRPRCCFRTDKWSWSAVEEEVKRLAAQGQEVCKDSSPGSPLASLCKRN FT QDVLAAHLDFIVKAVTERLFLLAETELHGLSPVELINQGCCDPVRLFVKQEPHTLKKIN FT EGRYRLISSVSLVDQIVERMLFGPQNRAEIALWDTIPSKPGMGLTLKSQARKIFGDLLV FT KHTHCPAYEADISGFDWTVQDWELWADVEIRIKLCSAGVNLAQCMRNRFYCFMNSVFQL FT SDGTLIQQCSPGVMKSGSYCTSSTNSRVRCLMAEIIGSPWCIAMGDDSVEGYVEGARDK FT YDALGHKCKDYQVCDSDGLLLRSVGFCSHHIDSSGAYLTSWAKTLFKHLHSKDEDFQDI FT EIELRNSPMWPSIRRYLVQETPSLDKRYEPNEEEEVQTTEQTGESTAQQVHSASCFTTC FT CERNCYGQGYACVQW" FT CDS 3159..3884 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C9EI93" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C9EI93" FT /protein_id="ACV90492.2" FT /translation="MNQTKKKKSRPRNKQAKAQPNKSTARVVSQPAAKGIVMGRAMPVF FT NGKAGVLRLRHHEILQTIVSTTDKYTVRSVNLVPANFSWLSGVAVNFSKWKWHALNLVY FT VPACSTSVQGNIDMALQYDGNDIPATTPEELSVMYGHSGGPVWSGTAGCRLLDNATMSG FT RGKPPEAIATIVDVSKFSKSNYLYRSGALSGDSQTVYCPCDLQYGVTAGITPTVGAIGY FT IWAAYDVEMFEPLPARLNK" FT misc_feature 3885..3983 FT /note="3' noncoding region" XX SQ Sequence 3983 BP; 1025 A; 971 C; 1012 G; 975 T; 0 other; ccaaaatata agaacgaagt gcaatgttcg tgccatttcc agacgtattg caaaatacag 60 ctgttggctc taaagtaaat gaaattcacg cttaatctca gaagcatcgg accaaaccag 120 atcgagacaa gtaagactta cattcccagt tgcgaattct ttcctgactg tgatttcgaa 180 gtcaactctc tggctgcttt agtgcgtaac gtcaagtcct tcggagttaa gcattggacg 240 gcaggaccca gtgtgcggtt gtggaatttg tacgaaagtg cattccaaga ccacgccaag 300 caccactaca ttgcgtttga agtggtttgc gcgttctgtg accaggtgtt tcagacgacc 360 ccaacaccgt cgagtcaaat ctccggttgt tggccagtgt tcgttgacgg agttaacaga 420 ggaattgtca cgactgcgcg ccgaaaggaa gccgaagtcg tacaaggcaa acccgactgt 480 tacatcgtcc gattttcgtc cacctgtaaa gaatgcatcg ttcaccgttt ggctacctcc 540 tactgctcat cagccttcca gctggagcag tgacttacga ttgcgtgcga ggggactgcc 600 cagcaggacc caactgtctg atgatggctc tgatgactct gttcactaca ggaatgtggt 660 ggatagtctc tctaagccta tactggatag agcgacagcg ttatcgctca gccgaagaga 720 agatctcacg gccgaagcga ttgcggctca ttggcgatcc ttacttggat ccctgtgatg 780 ggatcgttgg gaaaattctc gatgattgca ccgggtcagt acaagaggtc gtaatacaac 840 ctaagtggtg gcgcttcata aacatgtctt cccctacggt aaatcaggat gaagacaacg 900 aatgcgctat cctgggcaac agctacccaa aagttgagcc ccaccgtgaa cctggtagct 960 tcgtgctgct caaggttaac gaagaggttg ttggcgctgg atgtcgagta atttacgacg 1020 gaggtgatta cctcttgact gcgcatcatg tgtggtccca agcacctaat cacatagcga 1080 aaggtgggaa aaccgtggaa atatccactg agatgaaacc ccacctctcg tctaagaata 1140 aggtgctgga cttctgtcta gtacccattc cagctgctgt gtggtctaat cttggagtta 1200 aatccagtaa gatcgcgagt ttgcaccagc gctcaaacgt tacagtatac ggaggcactg 1260 cctcgaaaat gctgttgagc agctttggcg tcgctgaggc tgatgataat ccattgcgga 1320 taattcataa agcctccacc gcaagagcct ggagtgggtc tccgttatac aattccaatg 1380 gcttggtcct gggcgtccat cttggctacg accagcttgg ttcaacaaat agagcggtta 1440 acatcggcta tgtgttgaga ttcacgacca gtaatgagac agctcctcca gacttgaatt 1500 ttatcgagat tactgaagat gaagcagtcg accggcctag ttttgatgag tatgaaatcg 1560 agggctttgg gaagatcaaa acccgagccc gagaatacta cataccacga gacaaagatt 1620 ggaacaagta tgatgatgaa gacgatgatg ccttcttcga tgttcccgtg gctctctggt 1680 tgaattctaa tgagaccatt gagaagcctt taaacttcaa aggggccgca agttctccgc 1740 gcttgccgcc cttattgagc tcgggaatta cttctgggaa agcggaggac actatccgca 1800 aggagtcgga ctacaatttg ttggtaggtc gacttgtctc tttagagaga gctctagaaa 1860 agctctctca gagcgtttta aacttgcaag tgagaccttc ccagagctgc ttgactacaa 1920 ctggccagca cgaggatcaa aagctgagct tggctcgctc ctcctccaag ctgagcggtt 1980 cagatgcacc gagcccccag aaaacctcgc cagctgttgc gacaagctcg ccagcaggta 2040 cccagttacc cggccccgtt gttgcttcag aaccgacaaa tggtcttggt cagcagtcga 2100 agaagaagtc aagaggctcg cggcgcaagg gcaagaagtc tgcaaagact ccagccccgg 2160 cagcccgcta gcctccttat gtaagagaaa tcaagatgta ttggcagctc atcttgattt 2220 tatcgtgaaa gctgtcacgg agagattgtt tctcctggcc gagactgaat tgcacggcct 2280 cagtcctgtt gagttaatta atcagggttg ctgtgaccct gtgaggctct ttgttaaaca 2340 agagcctcac acgttgaaga aaatcaacga gggacgctac agattaatca gttcagtgag 2400 tttggtggac cagatcgtcg agcgcatgct cttcgggcct cagaaccgag ctgaaatagc 2460 tctctgggac accattcctt cgaaacccgg catggggcta acgcttaaaa gtcaggcgag 2520 aaagatcttt ggtgatctac tcgtcaagca cacccattgc ccagcatatg aagctgatat 2580 atcgggtttc gactggactg tccaggactg ggaactgtgg gctgacgttg agattagaat 2640 caagctgtgc agtgctggag ttaacctcgc acaatgcatg cgcaatcgat tctattgctt 2700 catgaattca gttttccagc tctccgacgg aacacttatt caacagtgtt cgccgggtgt 2760 tatgaagtca ggatcgtact gtacttcctc caccaactcc agagtccgct gccttatggc 2820 agagatcatt ggatccccgt ggtgcatagc catgggtgac gactctgttg aggggtatgt 2880 tgagggagcc agagataaat acgatgccct aggacacaaa tgtaaggact atcaagtctg 2940 tgactctgat ggattgcttc ttcggtccgt cggattttgt tcacaccaca ttgattcctc 3000 aggagcttac ctgacatctt gggccaagac gctgtttaag caccttcatt ctaaggatga 3060 agatttccag gacatcgaga ttgagttacg caactctccg atgtggccca gcatccgaag 3120 atatctagtc caagaaactc cgtcattgga caaaagatat gaaccaaacg aagaagaaga 3180 agtccagacc acggaacaaa caggcgaaag cacagcccaa caagtccaca gcgcgagttg 3240 tttcacaacc tgctgcgaaa ggaattgtta tgggcagggc tatgcctgtg ttcaatggta 3300 aggcgggcgt tctccgtctt cgtcaccacg aaatattgca aacgatagtc tccaccactg 3360 acaaatatac tgttagatcg gttaacctag tcccagctaa ctttagctgg ttgagtggcg 3420 tggccgttaa cttcagtaag tggaagtggc atgcgctaaa cttagtttat gtgcctgctt 3480 gttccacatc tgtacaaggg aacattgaca tggctcttca atatgatggt aatgacatac 3540 cagccaccac gccagaggag ctttctgtca tgtatggaca ctccggggga ccagtatggt 3600 ccggcaccgc agggtgccgt ctcctagaca atgccactat gtctggtcga ggcaagcccc 3660 cggaggcgat cgccactatt gtggatgttt ctaagttctc caagtcgaat tatctatatc 3720 gatctggagc gcttagtggc gattcgcaga ccgtatactg cccttgcgat ctacagtatg 3780 gtgtcacagc aggcatcacg cctacagttg gagccatcgg ctatatctgg gcggcgtatg 3840 atgttgagat gttcgagcca ctccccgcaa ggctcaataa ataagcaggg agctccagca 3900 gttggaagag ctggagcagt ttcatttcca gtgattgcaa gacacaccct tcttgcacgg 3960 gtatcacagc cgagctgcga tgc 3983 //