ID GQ478342; SV 1; circular; genomic DNA; STD; VRL; 2780 BP. XX AC GQ478342; XX DT 01-AUG-2011 (Rel. 109, Created) DT 28-AUG-2014 (Rel. 121, Last updated, Version 2) XX DE Rose leaf curl virus clone RoLCuV-[PK,Fai,06], complete genome. XX KW . XX OS Rose leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RX DOI; 10.1007/s11262-014-1076-6. RX PUBMED; 24781196. RA Khatri S., Nahid N., Fauquet C.M., Mubin M., Nawaz-Ul-Rehman M.S.; RT "A betasatellite-dependent begomovirus infects ornamental rose: RT characterization of begomovirus infecting rose in Pakistan"; RL Virus Genes 49(1):124-131(2014). XX RN [2] RP 1-2780 RA Khatri S.M., Nawaz-ul-Rehman M.S., Fauquet C.M.; RT "Rose leaf curl disease associated begomovirus"; RL Unpublished. XX RN [3] RP 1-2780 RA Khatri S.M., Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (28-JUL-2009) to the INSDC. RL ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO RL 63132, USA XX DR MD5; 22cf5b0af2191c105ae3d3e2d487c61c. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Rose leaf curl virus" FT /segment="DNA-A" FT /host="Chinese rose" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="Nazia Nahid" FT /collection_date="Nov-2006" FT /clone="RoLCuV-[PK,Fai,06]" FT /db_xref="taxon:875323" FT CDS 144..509 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:G0T4S7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G0T4S7" FT /protein_id="ADU33215.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICEPCCCPHCPRHKGKGMGEQAHEQ FT KAQDVQDVQKPRCSEGM" FT CDS 304..1074 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:G0T4S8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G0T4S8" FT /protein_id="ADU33216.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1095..1499) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer protein; REn" FT /db_xref="GOA:G0T4S9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G0T4S9" FT /protein_id="ADU33219.1" FT /translation="MDSRTGESITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINN FT VIRAVDHVLWNVLEHIVYVKQSSSIKFNIY" FT CDS complement(1240..1647) FT /codon_start=1 FT /product="C2" FT /note="transcriptional activator protein; TrAP" FT /db_xref="GOA:G0T4T0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G0T4T0" FT /protein_id="ADU33218.1" FT /translation="MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHI FT NCHNHGFTHRGIHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQ FT PEESVGNTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1571..2629) FT /codon_start=1 FT /product="C1" FT /note="replication associated protein" FT /db_xref="GOA:G0T4T1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0T4T1" FT /protein_id="ADU33217.1" FT /translation="MSRAFRINAKNYFLTYPKCSLTKEEALYQLQNIHTPVNKKFIRIC FT RELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIHGAKSSSDVKSYLEK FT TETPSIGESFRSMEDLHEGDNSQPMHAYAQAINTGSKSEALRVIRELAPKDYVLQFHNL FT NANLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASDNVMGPAARPLRPKSIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKSWAIHNATFITLTEPLYS FT GAHQGPTQAGQA" FT misc_feature complement(2176..2478) FT /note="similar to C4; movement associated protein" XX SQ Sequence 2780 BP; 728 A; 565 C; 673 G; 814 T; 0 other; accggatggc cgcgcttttt tgtcccctcg tgggtcccac caagtggtcc atggacacat 60 ggcccaatca aaagcactcg tgaaagctca attgatatgt gggccccata tataattgct 120 tgctgagtaa gtttgttgta aacatgtggg acccactatt gaatgagttt ccagaaactg 180 ttcatgggtt taggtgtatg ctagcaatta aatacttgca gctagtagaa aatacgtatt 240 ccccagacac tctgggatac gatttaatta gggatttgat ttcagtaata agggctagga 300 attatgtcga agcgaccagc agatataatc atttccacgc ccgcctcgaa ggtacgccgc 360 cgtctcaact tcgacagccc atatgcgagc cgtgctgctg cccccattgt ccgcgtcaca 420 aaggcaaggg catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagcccag atgttccgag gggatgtgaa ggcccatgca aggtccagtc atttgagtcc 540 agacatgata tccagcacat tggtaaagtc atgtgtgtta gtgatgttac tcgtggtatt 600 gggctgaccc acagggttgg caagaggttc tgtgttaagt ccgtttatgt tctgggcaag 660 atctggatgg atgagaacat caagactaag aatcatacga atagtgttat gtttttcctt 720 gttagggatc gtaggcctgt tgacaagcct caagattttg gtgaggtgtt taacatgttt 780 gataatgagc ccagcacggc gactgtgaag aatgttcatc gtgataggta ccaggtatta 840 aggaagtggc acgcaactgt gacaggtggc ctgtatgcat cgaaggagca ggctctcgtg 900 aagaagttta ttagggttaa taattatgtt gtgtacaacc agcaagaggc tggcaagtat 960 gagaatcata ctgagaatgc attgatgttg tatatggcgt gtacccacgc ctctaaccct 1020 gtgtatgcca cactgaagat acggatctat ttttatgatt cagtatcgaa ttaataaaat 1080 ttatcagtat cgaattaata aatattgaat tttattgaag atgattgttt tacatataca 1140 atatgctcta atacattcca taatacatga tcaactgctc taattacatt gttaatactg 1200 ataactccta gattatctaa atacttaagc acttgtgtct taaagaccct taagaaacga 1260 ccagtcggag gctgtgaggt catccagatt cggaaggcta ggaaacattt gtgtattccc 1320 aacgctttcc tcaggttgtg attgaactgt atctggacag tgatgatgtc ttggttcatg 1380 aggaatggcc tgttgtggtg ctctgttatc ttgaaataga ggggattttg aacctcccag 1440 ataaacacgc cattctgtgc ttgagctgca gtgatggatt cccctgtgcg tgaatccatg 1500 gttgtggcag ttgatgtgta cgtagtatga gcagccacac tcgaggtcaa ccctcttacg 1560 ccggatggct ctacgcttgg ccagcctgtg ttggaccttg atgggcacct gagtacagtg 1620 gctctgtgag ggtgatgaat gttgcattgt gtatagccca agacttcagt gctgagttct 1680 tttcctcatc gaggaactct ttatagctgg aattgggccc aggattgcat aggaagatcg 1740 tgggaatgcc ccctttaatt tgaactggct tcccgtactt ggtgttactt tgccagtccc 1800 tctgggcccc catgaattct ttaaagtgct ttaggtagtg ggggtctacg tcatcaatga 1860 cgttgtacca tgcatcattt gaatagatct tagggctcag atctaaatgg ccacataggt 1920 aattatgtgg acccagtgac ctagcccaca ttgttttccc cgtacgacta tcaccctcaa 1980 tgacgatact tttaggtctc aatggccgcg cagcgggacc catcacatta tcagaggccc 2040 attcctctat ggcctctgga acttgatcga aggaagaaga aagaaaaggg gaaacataaa 2100 cctccattgg aggtgcaaaa atcctatcta gattagcatt aagattatga aattgtaaga 2160 cataatcctt tggtgctagt tccctaatga ctctaagagc ctctgactta ctgcctgtgt 2220 taattgcctg ggcgtaagca tgcattggct gactgttgtc cccctcgtgc agatcttcca 2280 tcgatctgaa actctcccca atcgagggtg tctccgtctt ctccagatag gacttgacgt 2340 ccgagcttga tttagctcca tgaatgttag gatggaaatg tgctgacctg gttggcgata 2400 ccaggtcgaa gaatcggtta tttgtgcact ggtacttccc ctcgaactgg atgagcacgt 2460 gaagatgagg ttccccattt tcgtgaagct ctctgcagat cctgatgaat tttttgttta 2520 ctggggtatg tatgttttgt aattgataga gggcttcttc tttagttaga gagcatttgg 2580 gataagtgag gaagtaattc ttagcattta tgcggaaggc acgtgacatt ttggcaatcg 2640 gtgtacacac taattctctg tcaattggtg taagggggta caatatatac ttgtacacca 2700 aatggcaatt tggtaattca ggaactttaa tttgaatttt gaaattcaaa attcccaaaa 2760 gcggccatcc gtataatatt 2780 //