Dbfetch

Dbfetch

ID   GQ475555; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   GQ475555;
XX
DT   19-OCT-2009 (Rel. 102, Created)
DT   02-AUG-2012 (Rel. 113, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate K31 coat protein gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.1007/s11262-012-0748-3.
RX   PUBMED; 22562224.
RA   Biswas K.K., Tarafdar A., Diwedi S., Lee R.F.;
RT   "Distribution, genetic diversity and recombination analysis of Citrus
RT   tristeza virus of India";
RL   Virus Genes 45(1):139-148(2012).
XX
RN   [2]
RP   1-672
RA   Biswas K.K., Tarafdar A., Kumari S.;
RT   "Molecular variability in CTV isolates from Darjeeling Hills of
RT   Northeastern Himalayan region of India";
RL   Unpublished.
XX
RN   [3]
RP   1-672
RA   Tarafdar A., Biswas K.K.;
RT   ;
RL   Submitted (03-AUG-2009) to the INSDC.
RL   Division of Plant Pathology, Indian Agricultural Research Institute, New
RL   Delhi, Delhi 110012, India
XX
DR   MD5; 3af5bba1dfc6296a060503eec7fca2cc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus reticulata (Darjeeling mandarin)"
FT                   /isolate="K31"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Darjeeling Hills of West Bengal"
FT                   /collected_by="Kajal K Biswas"
FT                   /collection_date="2007"
FT                   /identified_by="Kajal K Biswas"
FT                   /db_xref="taxon:12162"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:D0EDH2"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:D0EDH2"
FT                   /protein_id="ACX55605.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVAAAESSFGSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGVT
FT                   YTRDGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 196 A; 125 C; 171 G; 180 T; 0 other;
     atggacgacg aaacaaagaa actgaagaac aaaaacaagg aaacgaaaga aggcgacgat        60
     gttgctgcag ctgagtcttc tttcggttcc gtaaatttac acatcgatcc gactctgata       120
     gcgatgaacg atgtgcgtca gttgggtacc caacagaatg ctgctttgaa cagagatttg       180
     tttcttacct tgaaagggaa gtatcctaac ttacctgaca aagacaaaga ctttcatata       240
     gctatgatgt tatatcgttt agcggttaag agttcatcat tacaaagcga cgatgacacc       300
     acgggtgtaa cgtacactcg agacggtgtt gaagtggatt tgtctgacaa gctttggact       360
     gacgtagtgt ttaactctaa gggtattggt aaccgcacta acgcccttcg agtctggggt       420
     agaactaacg atgcccttta tttggctttt tgtagacaga accgcaattt gagttatggt       480
     ggacgtccgt tagatgcggg aattccagcc gggtatcact acctgtgtgc agatttcttg       540
     accggagctg gcttgactga tttggaatgt gcagtgtaca tacaagctaa agagcaatta       600
     ttaaagaagc gaggggctga tgaggtcgta gttactaatg tcaggcagct tgggaaattt       660
     aacacacgtt ga                                                           672
//