Dbfetch
ID GQ472985; SV 1; circular; genomic DNA; STD; VRL; 2708 BP. XX AC GQ472985; XX DT 13-MAY-2010 (Rel. 104, Created) DT 13-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Soybean chlorotic blotch virus isolate Sb19 segment DNA-A, complete DE sequence. XX KW . XX OS Soybean chlorotic blotch virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2708 RX DOI; 10.1007/s00705-010-0630-3. RX PUBMED; 20229118. RA Alabi O.J., Kumar P.L., Mgbechi-Ezeri J.U., Naidu R.A.; RT "Two new 'legumoviruses' (genus Begomovirus) naturally infecting soybean in RT Nigeria"; RL Arch. Virol. 155(5):643-656(2010). XX RN [2] RP 1-2708 RA Alabi O.J., Kumar P.L., Mgbechi-Ezeri J.U., Naidu R.A.; RT ; RL Submitted (11-AUG-2009) to the INSDC. RL Plant Pathology, Washington State University, 24106 N. Bunn Rd., Prosser, RL WA 99350, USA XX DR MD5; 4183b9f7975ae7858a87c1dd7376486d. XX FH Key Location/Qualifiers FH FT source 1..2708 FT /organism="Soybean chlorotic blotch virus" FT /segment="DNA-A" FT /host="soybean" FT /isolate="Sb19" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="2007" FT /db_xref="taxon:761702" FT gene complement(239..559) FT /gene="AC4_5_2" FT CDS complement(239..559) FT /codon_start=1 FT /gene="AC4_5_2" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:D6MTW5" FT /protein_id="ADG36420.1" FT /translation="MCQSGPTSNIGTAENCTRVTNVMLGVIRLDLTRPFTAEGHIWTPP FT HPVHHGLPIHGPILPGPLLVGPGDGSGHGTWTVEVQPPPNLRQRCRNYDIGVSLHDISF FT RE" FT gene 260..1021 FT /gene="AV1" FT CDS 260..1021 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:D6MTW6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D6MTW6" FT /protein_id="ADG36415.1" FT /translation="MKRNADIVISTPLSKVRRRLNFDSPRAMPTAIPRTNKKRAWENRP FT MYRKPMMYRMWRSPDVPFGCEGPCKVQSYDAKHDVSHTGTVLCCSDITRGSGLTHRVGK FT RFTIKSILLMGKIWMDDNIKLKNHTNIVTFFLVRDRRPSDKPYSFGSVFNMFDNEPTTA FT TVKQDNRDRSQVIRKFHATVTGGQYASKEQALVKKFFKINHKVVYNNQEGAEYKNHQEN FT ALLLYMACSHASNPVYATIKARVYFYDSVTN" FT gene complement(701..955) FT /gene="AC5" FT CDS complement(701..955) FT /codon_start=1 FT /gene="AC5" FT /product="hypothetical protein" FT /db_xref="GOA:D6MTW7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D6MTW7" FT /protein_id="ADG36421.1" FT /translation="MTTCHIEKQSILLVVLVLRTFLIVVDDLVINFKKFLHQCLLLRSI FT LATSNCGMKLTNNLGSIAVILFNCRCRGFIVEHVEHTAK" FT gene complement(1018..1431) FT /gene="AC3" FT CDS complement(1018..1431) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /note="REn" FT /db_xref="GOA:D6MTW8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D6MTW8" FT /protein_id="ADG36418.1" FT /translation="MDLRTGESITAVQAGNGVYIWAVPNPLHFKVIEHHMNIPGLPYNI FT IKLRVQFNHNLRRALGLHKCWITLTILTRLTRSTNPTGIFLRVFKTQVLRYLDSIHVIS FT INGVIRAINHCLYDVLVGTEEVRTKYEIKFNLY" FT gene complement(1163..1579) FT /gene="AC2" FT CDS complement(1163..1579) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:D6MTW9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D6MTW9" FT /protein_id="ADG36417.1" FT /translation="MRSSSASPSHSTAVPIKVRHRQAKKRQIRRRRVDLRCGCSYFVSI FT NCANHGFTHRGIHHCSSSREWRLYLGGPKSSALQSDRASHEYSGVAIQHNQASSAVQPQ FT PPESIRTPQVLDNLDDINAIDPLYQSDWDFLEGL" FT gene complement(1479..2567) FT /gene="AC1" FT CDS complement(1479..2567) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:D6MTX0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D6MTX0" FT /protein_id="ADG36416.1" FT /translation="MPRSGAFRVNAKNIFLTYPRCSLSKDEALELLKGIPTPVNKKFIK FT VARELHEDGQPHLHVLLQFEGKFSIKNPRLFDLVSRASAHVFHPNVQGAKSSSDVKSYI FT DKDGDTVSWGEFQIDGRSSRGGKQSANDAYAAAINTGSPTKALQLLKEPCPKDYVLQFH FT HLKGNLERIFMKEPTPWACPYDPRSFNNVPDVMLDWVSVNVKDPAARPNRPMSIVVEGD FT SRTGKTMWARSLGVHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDW FT QSNTKYGKPIQIKGGIPTIFLCNPGHSSSYKSYLDEEKNSSLKQWALKNAIFVSIAFPL FT YSSPDQGKTSPGEEEANPTPPC" FT gene complement(2117..2410) FT /gene="AC4" FT CDS complement(2117..2410) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D6MTX1" FT /protein_id="ADG36419.1" FT /translation="MGSHISMCCCNSKVNSPSKILDCSTLSRERLLMCSTQTYKELNPA FT PTSSPTSTKTATPCHGESFRSMEDRVVEVSNLRTTLTPQQLTRAVRLRLSSY" XX SQ Sequence 2708 BP; 690 A; 631 C; 625 G; 762 T; 0 other; acctgagggc cgcgcttttg gtgcccacct ttcgaccaat cagaatgcgc gctgatagct 60 atcataagcc ttgggccgtc tataaagtag cccacctcct tattgggcta caaacatgtt 120 taacccattg gtcgaaactc tcccctgcac cccccacggt ctcggtgtgt actcgctctc 180 aagtttctga aattgtttga ggaaacccac gtgctctcag cgacagaggt aaattcagtt 240 attcacggaa ggaaatatca tgaagcgaaa cgccgatatc gtaatttcta cacctttgtc 300 gaaggttcgg aggaggttga acttcgacag tccacgtgcc atgcccactg ccatccccag 360 gaccaacaag aagagggcct gggagaatcg gcccatgtat cggaagccca tgatgtacag 420 gatgtggagg agtccagatg tgcccttcgg ctgtgaaggg ccttgtaagg tccagtcgta 480 tgacgccaag catgacgtta gtcacacggg tacagttctc tgctgttccg atattactcg 540 tgggtccgga ttgacacatc gtgtcggcaa aaggtttacc atcaagtcca ttcttttgat 600 gggcaagatt tggatggacg acaatatcaa attaaagaac cacactaata tcgtcacctt 660 ttttttagtg cgcgataggc gcccatctga caagccatat tcatttggca gtgtgttcaa 720 catgttcgac aatgaaccca cgacagcgac agttaaacaa gataaccgcg atcgatccca 780 agttattcgt aagtttcatg ccacagttac tggtggccaa tatgcttcta aggagcaggc 840 attggtgaag aaatttttta aaattaatca caaggtcgtc tacaacaatc aggaaggtgc 900 ggagtacaag aaccaccagg agaatgcttt gcttctctat atggcatgta gtcatgcttc 960 taacccagtg tatgctacta ttaaggctcg tgtgtatttt tatgattcag tcacaaatta 1020 ataaagattg aattttattt catatttggt acgcacttct tcagtgccaa caagtacatc 1080 gtacaaacaa tgattaatgg ctcttataac tccattaatc gaaattacat gaattgaatc 1140 taaataacgc aacacttgag tcttaaagac cctcaagaaa atcccagtcg gattggtaga 1200 gcgggtcaat cgcgttaata tcgtcaaggt tatccagcac ttgtggagtc ctaatgctct 1260 ccggaggttg tggttgaact gcactcgaag cttgattatg ttgtatggca accccggaat 1320 attcatgtga tgctcgatca ctttgaagtg cagaggattt gggaccgccc agatatagac 1380 gccattcccg gcttgaactg cagtgatgga ttcccctgtg cgtaaatcca tggtttgcgc 1440 aattaattga gacgaaatag gaacagccac agcgtagatc aacacggcgg cgtcggattt 1500 gcctcttctt cgcctggcga tgtcttacct tgatcgggac tgctgtagag tgggaaggcg 1560 atgctgacga agatcgcatt ctttaatgcc cactgtttca gggatgaatt tttctcttca 1620 tccaaataac tcttataaga gctactgtgt cccgggttgc ataaaaagat ggtgggaatt 1680 ccccctttaa tttgaatcgg tttaccgtat ttcgtgttgc tctgccaatc atgctgggcc 1740 cccatgaatt ccttgaagtg ctttaggtag tgcggatcta cgtcatcgat gacgttgtac 1800 catgcattat tgctgtacac ctttggactc aggtctagat gaccacatag gtaattgtgt 1860 acccccaaag accgcgccca catcgtcttc cccgttctgg aatcaccttc aacgacgata 1920 ctcatgggtc tgttaggccg cgcagcggga tctttcacat taacagacac ccaatcaagc 1980 ataacgtccg ggacgttgtt aaatgaacgg ggatcataag gacaagccca tggtgttggc 2040 tccttcatga aaatcctttc taaattacct ttaaggtggt ggaactgtaa tacataatcc 2100 tttggacatg gttcctttaa taactggaga gccttagtcg gactgcccgt gttaattgct 2160 gcggcgtaag cgtcgttcgc agattgctta cctccacgac tcgatcttcc atcgatctga 2220 aactctcccc atgacacggt gtcgccgtct ttgtcgatgt aggacttgac gtcggagctg 2280 gatttagctc cttgtacgtt tgggtggaac acatgagcag acgctctcga gacaaggtcg 2340 aacagtcgag gatttttgat ggagaattta ccttcgaatt gcagcagcac atggagatgt 2400 ggctgcccat cttcgtgtag ctctctagct accttgatga acttcttgtt cacaggtgtt 2460 ggtataccct tgagtaattc cagagcttcg tcttttgata atgagcatct gggatatgtg 2520 aggaagatat tcttcgcatt cactctaaaa gctccgcttc taggcatgct tgcttccgta 2580 cagggacacc aattggggac tcgtcattta ttccttgtat tgggggcttt gggggcctat 2640 aaatacttct agtgtctatc acaatatgac atacgtgtca cacatctagc ggccctcagt 2700 ataatatt 2708 //