ID   GQ438739; SV 1; linear; genomic RNA; STD; VRL; 2421 BP.
XX
AC   GQ438739;
XX
DT   26-AUG-2010 (Rel. 105, Created)
DT   26-AUG-2010 (Rel. 105, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Mu 08 RNA dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2421
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse";
RL   Unpublished.
XX
RN   [2]
RP   1-2421
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (01-AUG-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 5f774c160431d9de5b261796146b51ed.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2421
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Mu 08"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:112229"
FT   gene            <1..471
FT                   /gene="RdRp"
FT   CDS             <1..471
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="UniProtKB/TrEMBL:E0X1U0"
FT                   /protein_id="ADL63133.1"
FT                   /translation="TECSIAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNL
FT                   LKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT                   DMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            497..1201
FT                   /gene="TGBp1"
FT   CDS             497..1201
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E0X1U1"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E0X1U1"
FT                   /protein_id="ADL63134.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPRLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1182..1553
FT                   /gene="TGBp2"
FT   CDS             1182..1553
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADL63135.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1405..1653
FT                   /gene="TGBp3"
FT   CDS             1405..1653
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADL63136.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1699..2412
FT                   /gene="CP"
FT   CDS             1699..2412
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ADL63137.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2421 BP; 730 A; 578 C; 443 G; 670 T; 0 other;
     actgagtgtt cgattgcata cactgccaca agattccata ttgacaatac tattaagcaa        60
     gtgtatgccg gtgacgacat ggcattagat ggagttgtga gtgaaaagaa atctttcagg       120
     aagttacaaa atctactaaa actcacttca aaaacgctgt acccaaaaca ggttaaagga       180
     gattacgctg aattttgtgg ttggactttc acaccagggg gtataattaa aaatccactt       240
     aaaatgcatg cctcaattat gctgcaagaa gccattggca atctgcacac agcagccaga       300
     tcttatgcaa ttgacatgaa gcattcatac caaatgggtg accaactgca tgactaccta       360
     acccccgatg aagctgaaca acatttccta gctgtgagaa agcttcacaa actccatcaa       420
     ggcgaggcca tgcgtcttgg tgagaaaagt ccaccaagat caacccatta aggggttaag       480
     ttttccccag tttgaaatgg aaagatcaac tttgatcaat ttacttctgt tacacaaatt       540
     tgaacacaag attaacactg aaggaatcat tgttgtgcac ggaattgctg gaactgggaa       600
     aaccacattg cttaggactt tattttctgc ataccctaga ttagttatag gttcacctag       660
     gccttgttac ttagataaag ctaataaaat ttcacaagtt tgcctttctt gttttccaaa       720
     taccttgtgt gacattgttg acgagtacca tctcttagaa agttttcctg aaccgaaact       780
     agccattttt ggtgacccct gtcagtgcac ttacattgaa aggttgagaa cacccaacta       840
     cacatccttc agaacacacc gatttggcaa atccactgct gctctactaa acaagttatt       900
     tgatcttaac attgagtcag tcaaagcaca agacgacaca gtagaatact ttgatccttt       960
     cgcagtggac ccctctgaac acatttctgc ttcagaaaaa gaagttttgg aatttgtagg      1020
     tgatcaggtt gagactacaa gctctgaaga actagctggt ctcgagttta gtgaagttac      1080
     tttctactgt actacacttg ctggtgctgt tcaagaaaat cctgccaaaa ccttcatttc      1140
     actcactagg cacacttcaa agctcacaat tggtgaacta aatgccaggt ctgactccta      1200
     gagctgatct tactgacacg tataaaatca ttgctatagc ctttctactg tcagcttgca      1260
     tttacttcca aaacagtcat tatcaaccag ttgcaggtga taacttgcac agactaccct      1320
     ttggtggtca gtatcaagac ggaactaaga agatttctta ctttccgcag caacaatcct      1380
     actttcactc aggaaacaag cttaatgtcc tcatacttat cttcattctt acactgggta      1440
     ttgtcctcac caataaattt agttttagca ttagccgtaa tactcaccag catcattgct      1500
     acaacacaca ttctgcaacc caaacaggtc aatcagtgcc aggtcatcat tgatggtgca      1560
     gccatagtta taacaaattg tccaaacaca cccgaagttc ttaaagcaat caacttctcc      1620
     ccttggaacg ggttaagttt tcctcaattg tgaaatcata tttgttatct agttaaattc      1680
     aaacaattta actcaactat ggaaaaccaa cctacagctt ctaacccatc agatgtacca      1740
     ccaactgctg ctcaagctgg tgcccagagc ccagccgact tctcaaatcc taatacagct      1800
     ccttccctaa gtgatttgaa gaagatcaaa tacgtgtcaa ctgtcacttc agttgccacg      1860
     cctgctgaaa ttgaggccct tggcaagatc tttactgcca tgggtttagc agccaatgag      1920
     accggacctg ccatgtggga cctcgctcgt gcttatgctg atgtgcaaag ttcaaaatct      1980
     gcacaactta taggtgccac accatccaac cctgctttgt ctagacgtgc acttgctgca      2040
     cagtttgatc gtatcaatat cacacccaga caattctgca tgtattttgc aaaaattgtt      2100
     tggaacatac tgttagacag caatgtgcca cctgccaact gggcaaaatt gggctatcag      2160
     gaagatacca agtttgctgc ttttgacttc tttgatggag tcacaaatcc agctagtcta      2220
     cagcctgcag atggcctaat caggcagccc aatgaaaaag agcttgctgc tcactcggtt      2280
     gctaaatatg gtgcccttgc ccgccagaaa atatccactg gtaactacat caccaccctt      2340
     ggtgaagtta cacgtggtca catgggcggc gccaacacta tgtacgcaat tgatgcacct      2400
     cctgaactct aaacactcga a                                                2421
//