Dbfetch
ID GQ438739; SV 1; linear; genomic RNA; STD; VRL; 2421 BP. XX AC GQ438739; XX DT 26-AUG-2010 (Rel. 105, Created) DT 26-AUG-2010 (Rel. 105, Last updated, Version 1) XX DE Pepino mosaic virus isolate Mu 08 RNA dependent RNA polymerase (RdRp) gene, DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein DE (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2421 RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.; RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the RT occurrence of tomato collapse"; RL Unpublished. XX RN [2] RP 1-2421 RA Cordoba-Selles M.C.; RT ; RL Submitted (01-AUG-2009) to the INSDC. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX DR MD5; 5f774c160431d9de5b261796146b51ed. XX FH Key Location/Qualifiers FH FT source 1..2421 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="Mu 08" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2008" FT /db_xref="taxon:112229" FT gene <1..471 FT /gene="RdRp" FT CDS <1..471 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:E0X1U0" FT /protein_id="ADL63133.1" FT /translation="TECSIAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNL FT LKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI FT DMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 497..1201 FT /gene="TGBp1" FT CDS 497..1201 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:E0X1U1" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E0X1U1" FT /protein_id="ADL63134.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPRLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 1182..1553 FT /gene="TGBp2" FT CDS 1182..1553 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ADL63135.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 1405..1653 FT /gene="TGBp3" FT CDS 1405..1653 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ADL63136.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1699..2412 FT /gene="CP" FT CDS 1699..2412 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q2UVL7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ADL63137.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2421 BP; 730 A; 578 C; 443 G; 670 T; 0 other; actgagtgtt cgattgcata cactgccaca agattccata ttgacaatac tattaagcaa 60 gtgtatgccg gtgacgacat ggcattagat ggagttgtga gtgaaaagaa atctttcagg 120 aagttacaaa atctactaaa actcacttca aaaacgctgt acccaaaaca ggttaaagga 180 gattacgctg aattttgtgg ttggactttc acaccagggg gtataattaa aaatccactt 240 aaaatgcatg cctcaattat gctgcaagaa gccattggca atctgcacac agcagccaga 300 tcttatgcaa ttgacatgaa gcattcatac caaatgggtg accaactgca tgactaccta 360 acccccgatg aagctgaaca acatttccta gctgtgagaa agcttcacaa actccatcaa 420 ggcgaggcca tgcgtcttgg tgagaaaagt ccaccaagat caacccatta aggggttaag 480 ttttccccag tttgaaatgg aaagatcaac tttgatcaat ttacttctgt tacacaaatt 540 tgaacacaag attaacactg aaggaatcat tgttgtgcac ggaattgctg gaactgggaa 600 aaccacattg cttaggactt tattttctgc ataccctaga ttagttatag gttcacctag 660 gccttgttac ttagataaag ctaataaaat ttcacaagtt tgcctttctt gttttccaaa 720 taccttgtgt gacattgttg acgagtacca tctcttagaa agttttcctg aaccgaaact 780 agccattttt ggtgacccct gtcagtgcac ttacattgaa aggttgagaa cacccaacta 840 cacatccttc agaacacacc gatttggcaa atccactgct gctctactaa acaagttatt 900 tgatcttaac attgagtcag tcaaagcaca agacgacaca gtagaatact ttgatccttt 960 cgcagtggac ccctctgaac acatttctgc ttcagaaaaa gaagttttgg aatttgtagg 1020 tgatcaggtt gagactacaa gctctgaaga actagctggt ctcgagttta gtgaagttac 1080 tttctactgt actacacttg ctggtgctgt tcaagaaaat cctgccaaaa ccttcatttc 1140 actcactagg cacacttcaa agctcacaat tggtgaacta aatgccaggt ctgactccta 1200 gagctgatct tactgacacg tataaaatca ttgctatagc ctttctactg tcagcttgca 1260 tttacttcca aaacagtcat tatcaaccag ttgcaggtga taacttgcac agactaccct 1320 ttggtggtca gtatcaagac ggaactaaga agatttctta ctttccgcag caacaatcct 1380 actttcactc aggaaacaag cttaatgtcc tcatacttat cttcattctt acactgggta 1440 ttgtcctcac caataaattt agttttagca ttagccgtaa tactcaccag catcattgct 1500 acaacacaca ttctgcaacc caaacaggtc aatcagtgcc aggtcatcat tgatggtgca 1560 gccatagtta taacaaattg tccaaacaca cccgaagttc ttaaagcaat caacttctcc 1620 ccttggaacg ggttaagttt tcctcaattg tgaaatcata tttgttatct agttaaattc 1680 aaacaattta actcaactat ggaaaaccaa cctacagctt ctaacccatc agatgtacca 1740 ccaactgctg ctcaagctgg tgcccagagc ccagccgact tctcaaatcc taatacagct 1800 ccttccctaa gtgatttgaa gaagatcaaa tacgtgtcaa ctgtcacttc agttgccacg 1860 cctgctgaaa ttgaggccct tggcaagatc tttactgcca tgggtttagc agccaatgag 1920 accggacctg ccatgtggga cctcgctcgt gcttatgctg atgtgcaaag ttcaaaatct 1980 gcacaactta taggtgccac accatccaac cctgctttgt ctagacgtgc acttgctgca 2040 cagtttgatc gtatcaatat cacacccaga caattctgca tgtattttgc aaaaattgtt 2100 tggaacatac tgttagacag caatgtgcca cctgccaact gggcaaaatt gggctatcag 2160 gaagatacca agtttgctgc ttttgacttc tttgatggag tcacaaatcc agctagtcta 2220 cagcctgcag atggcctaat caggcagccc aatgaaaaag agcttgctgc tcactcggtt 2280 gctaaatatg gtgcccttgc ccgccagaaa atatccactg gtaactacat caccaccctt 2340 ggtgaagtta cacgtggtca catgggcggc gccaacacta tgtacgcaat tgatgcacct 2400 cctgaactct aaacactcga a 2421 //