ID GQ428155; SV 1; circular; genomic DNA; STD; VRL; 7586 BP. XX AC GQ428155; XX DT 22-SEP-2009 (Rel. 102, Created) DT 22-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Pelargonium vein banding virus, complete genome. XX KW . XX OS Pelargonium vein banding virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7586 RA Lockhart B.E., Mason S.L., Olszewski N.E.; RT "Genomic characterization of a Badnavirus causing vein banding in RT Pelargonium"; RL Unpublished. XX RN [2] RP 1-7586 RA Lockhart B.E., Mason S.L., Olszewski N.E.; RT ; RL Submitted (30-JUL-2009) to the INSDC. RL Plant Biology, University of Minnesota, 1445 Gortner Ave., St. Paul, MN RL 55108, USA XX DR MD5; bff1e7a5fb61e0c90a90525eb2a8c59a. XX FH Key Location/Qualifiers FH FT source 1..7586 FT /organism="Pelargonium vein banding virus" FT /host="Pelargonium x hortorum" FT /mol_type="genomic DNA" FT /country="USA" FT /note="acronym: PVBV" FT /db_xref="taxon:671126" FT misc_binding 1..19 FT /bound_moiety="tRNA" FT /note="putative tRNA binding site for genome replication" FT CDS 388..840 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:C9DT05" FT /protein_id="ACV74335.1" FT /translation="MSERFEQAIQKWYNESRTADLRYLDLATESPTVKDYCSVINNNVS FT VIYDRLLLHSKVAIKDTYKILEAQEANQDILVQEIRRLSKRVKALEAEALASKPLTAEQ FT VRELVKEIAAQPKLVEEQAFKLTTDLRSQVLQVKELVEKVQHLLVS" FT CDS 837..1247 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:C9DT06" FT /protein_id="ACV74336.1" FT /translation="MSRPDSATTAEYIAAAQATEALGSPAEGFLSVKNIPPGSSSQTAL FT LIKQNNFLLELVLDLHRKINGVEARLSRAKEPAEGSQGQGLEEIIQKLDKLKIGDGEQK FT THSIKGPGKVYFYRDPKALAEEERRKAKLRYA" FT CDS 1240..7152 FT /codon_start=1 FT /product="putative polyprotein" FT /note="ORF3" FT /db_xref="GOA:C9DT07" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:C9DT07" FT /protein_id="ACV74337.1" FT /translation="MPEAAAPAAYAANWPKGAVLYNGVNFLAADGKTVILSDAAKRIKA FT GVAYLRRKQRRWAKAQMRRAVCAANKARKAYYRLTASTPIIQVGDYGFAEPISKGFRYK FT GPGAPKKEPRTTSPAERRRRVGPKAQKEEKAQDWSVLDDGNFLASLWEPEDWACPCSPI FT AESPAQMGPISARTIQGPPKRPTTRESAQEPIEECCFMMRQGSTSSTLPPVRGSNTAAA FT PIQEDQVRDYRRWQRLRWNMRNRWNTTFRRTLESELDPEAEIQLSQRRRANMVPAEVLY FT EEGWSSTRLHRVYQHYSEERILSTGEQVELPFVTRRSYERLQRTGYQQIHLGLVLIRVH FT TLHRRDAGVKALVVFRDTRWRDDRSIIGSMEIDLSIGTQLAYIAPDMMMSIHDFYNHVE FT VVVATRGYEEWQGGESNLLITRGLVGRLTNTSHASFNYNVEQVAEHLSSHGIVALPGRR FT HSADAHNGEMWSIRPPRSNSVRNPREVQISNRLDGSVSLRFTGYEIAPAVTEALQSDDE FT SELAAMAIQESGEDEDDDPFQDFLYMASMPRTAYESQPIWDDSDSEEEPDQGFINPFSE FT DGGGSKDFEAKTQTALMTSMEELPYPKLKKLEAAFSSGSVVSNYAPPQDSNMGPPTYPP FT APTNGASSSRPMPTLGLEGARPKVSDFRRRETSNQWNLPSAQQVNGAMLVLPEDIGLYE FT EVISRWESITINLLNDRTWDNNKARVIYVENLLGESEKKIWQQWRTTYTKEYEELVAIA FT DDPQDITSQVRMVITLEDPYRGSTEEQSRAYLDLERLVCDDIKDILPYLNDFKVLAAKS FT GRMFTSPELSEKLFRKLPPLIGGEIEAAFKEKYPGNTVGVLPRIVFIHHYLTDLCKKAA FT IQRGIKDLSFCRKFPIPGYYQKSQKKYGLRKSQSYKGKPHDTHVRVVKNKDKARSVKCK FT CFICGEEGHFARECRSKKGNIARAAVVDNLDLPPDFDVLSLDLNESDSDAICSFSEGEI FT ANGARYVQEELHKLPYETALMLQSQNSWRRTVKLPAYQDCCGHQPTLGPNLTFEQAKCA FT FCGVQTNPEMRMYCDICRLTACPMCSKYYLDIPVRMNKPPPPPPENKDELIHELVVYTE FT TLLKRVKELEEQLKEKELEIARLELMINDEGKQETAEEGEEANFIEESSTIHCEEDEFG FT ASAAVTGRKVINRLYNVKILFTIPNVKPFTLNAIVDTGATSCCADIRAIPEEALEELNY FT TVNFFGVNSESQARHKIKGGQISMGESNFRLPFIYAFKMDSKDEIQMLLGCNFLRSMAG FT GVRLEGTTITFYKQITTINTTLAVESAKKAIPELDLDAEMLAEIQELVYYQSPARNPRF FT ESRFEGLIGRLRNLGFIGENPVKHWARNQVKCRLEIINPDLTIQDKPLKHVTPQMEAQF FT KRHTDALLQLGVIRPSKSRHRTMAIMVQSGTTVDPATGKETRGKERMVYNYRSLNDNTH FT KDQYSLPGINTILKKIGTSKVYSKFDLKSGFHQVAMDEESIPWTAFCVPGGLYEWLVMP FT FGLKNAPSVFQRKMDDCFKGTEAFIAVYIDDILVFSKNEEEHQKHLQKFLEIVEKEGLV FT LSPTKMKIAVPEVEFLGAIIGNSTIKLQPHIIRKIADIPEEQLKEKKGLRGWLGILNYA FT RTYIPNLSTLLGPLYQKTSPHGDKRLKAQDYALIRQIKALVQNLPDLKIPPADSYIVLE FT TDGCMEGWGGVCKWKPNKHSPKSQEKVAAYASGKFPVVKSTIDAEIHACMGTLSALKIH FT YLDRKEITLRTDCQAIVSFHNKMAQNKPSRVRWISFTDFITGLGIKVNIEHIDGKDNVL FT ADTLSRLIFKIQEEGALMALERRPEWEPRPPPRVDNNSPMNIIYGLIHQDQQELINRHK FT EALWQSTPKYEGPTGLMIPLNEAQEWRAFARRMRIAQAQKVDKELLGLLQMAQDKAQYI FT EDQRAGNNWATDAWPNYLEDVNVIHDVRRKIQNITRH" XX SQ Sequence 7586 BP; 2375 A; 1793 C; 1892 G; 1526 T; 0 other; tggtatcaga gcttagtttt ccaatggaga tgtcaggcta aaacccaatt ctccggtcac 60 gccaagaagg gtaagttgta cgtttttgtg ttgagtgttt aaataatcag atcaactttg 120 caagtttctg aattattcct ataattccgg ttggtatcca agcttgaact attgtgtttg 180 taaccagagg tattcaccgt taaatcacaa gggattaatc ctaaagaccc ggccttgtaa 240 gtctacctgg ggtagccgtt ggcgtaggtt gcggaggtat ccagtggttt aatgttgtgt 300 caagcaaagg tgaacactca gtagtaaaac agtttgaccg ttactggagc tatactatag 360 ggataaagca gagactttgc ctgagtaatg tctgagaggt ttgaacaggc aatacaaaaa 420 tggtacaatg aatcccggac ggctgacctg agatacttag acttagcaac tgaatcccca 480 acagtgaagg attactgctc agtgatcaac aacaacgttt cagtgatcta cgacagattg 540 ctgctgcact cgaaagtggc cataaaggat acatacaaaa tccttgaggc acaagaagca 600 aaccaggaca tcctggttca agaaatcaga aggctatcta aaagagtcaa agcacttgaa 660 gccgaggctc tcgccagcaa accgctcaca gccgagcagg ttcgcgagct ggtcaaagaa 720 atagctgcac aaccaaagct tgtggaagag caagctttta aactaacaac agacctcagg 780 agtcaagtcc tgcaggtgaa ggagctagtg gagaaggttc aacaccttct tgtctcatga 840 gccgtcctga ttctgcaaca acagcagaat atatcgcggc ggcccaagcc actgaagcac 900 taggaagccc ggcagagggt ttcctctcag tcaagaacat cccaccggga tccagttcgc 960 agactgcgtt actgataaag cagaacaact ttctgctaga attggtgctt gatcttcacc 1020 ggaagatcaa tggagtcgag gcccgtctct caagggcaaa agaaccagct gaaggttcac 1080 aaggtcaagg tctggaagaa atcatccaga agcttgacaa actcaaaatc ggtgatggag 1140 aacagaagac ccactccatc aagggtccag gaaaggtcta cttctaccga gaccctaagg 1200 cgctcgccga agaagagcgc agaaaggcaa agctacgcta tgcctgaggc agctgcacca 1260 gcagcctatg cggccaactg gcccaaagga gccgtactgt acaacggcgt caacttcctt 1320 gctgcagatg gcaagacggt gatcctctcc gatgcagcca agaggatcaa agctggagtc 1380 gcctacctga ggcgaaagca gcgacgatgg gccaaagccc aaatgagaag ggcagtctgt 1440 gctgccaaca aagccaggaa ggcctactac aggctgacgg cttccactcc gatcatccaa 1500 gtcggagatt atgggttcgc tgagcccata tcgaaagggt tccgctacaa gggaccagga 1560 gctccgaaga aggagccaag gaccacaagt ccagcagagc gcaggaggcg cgtagggccc 1620 aaggcccaaa aggaagaaaa ggcccaggac tggtcagtcc tggatgatgg aaatttcctg 1680 gcttccctct gggaaccaga agattgggcc tgcccgtgca gcccaatagc tgagagcccg 1740 gcccagatgg ggcccatctc agcaagaact atacaaggcc cacccaagag gccaacaacc 1800 agggaatcgg cccaggaacc gattgaagag tgctgcttca tgatgaggca aggcagcacc 1860 agctcaacac tcccacctgt gagagggagt aacacagcag ccgcaccgat ccaggaggat 1920 caagttagag actaccggcg ttggcaaaga ctccggtgga acatgcggaa taggtggaac 1980 accaccttta gaagaacgct cgagtcagag ttggatccag aagcagagat ccagctctca 2040 caacgaagaa gagcgaatat ggtaccagct gaggtactat atgaagaagg atggagcagc 2100 acaaggctcc atagggtgta ccagcactac tcggaggaga gaatactcag cactggtgag 2160 caagtggaac ttccatttgt aaccaggaga agttatgaaa gactccagag gacgggatat 2220 cagcaaatcc acctgggatt agtactgata agggtgcaca ccctccatag acgagacgca 2280 ggagtaaaag cgctcgtagt gttccgagac acaagatgga gagacgatag gtccatcatt 2340 ggatctatgg agatcgatct gtctatagga actcaactgg cctacatagc cccagacatg 2400 atgatgagca tccatgactt ctacaaccat gtagaggtag tggtagccac gagaggctat 2460 gaggaatggc aaggaggaga atcaaacctc ctaataacca gaggattggt tgggcgtctt 2520 accaacacca gccatgcaag cttcaactac aacgtggaac aagttgctga acacttgtcc 2580 agtcatggga ttgttgcact cccaggaaga aggcactctg cagatgccca caatggagaa 2640 atgtggagca taagaccacc taggtcaaat tcggtaagga atccaaggga ggtccaaatc 2700 agcaacagac tagatgggtc tgtcagcctc cgattcacag ggtacgaaat cgcccccgca 2760 gttactgaag cactgcaaag cgatgatgaa tctgaactcg cagccatggc aatccaggaa 2820 tcaggggagg atgaagatga tgatcctttc caagatttcc tctatatggc cagcatgccc 2880 agaacagcat acgaaagtca acctatctgg gatgacagcg attcagagga ggaacctgat 2940 caagggttta tcaacccttt ttcggaagat ggtgggggga gtaaggactt cgaagccaaa 3000 actcagacgg ctcttatgac gtccatggaa gaacttccct acccaaagct gaagaagttg 3060 gaagccgcgt tcagcagtgg ctcggtggta tcgaactatg caccaccaca ggactccaac 3120 atgggtcccc caacttaccc accggcacct acaaacggag catctagctc aaggcctatg 3180 ccaacattgg gcctagaagg agcaaggccc aaggtgtccg acttcagaag aagggaaacg 3240 agtaaccaat ggaaccttcc atcggcccag caagtaaatg gggccatgct cgtcctccca 3300 gaagacattg ggctatatga agaggtcata tccagatggg aatcaataac gatcaacctt 3360 ctgaatgata ggacctggga caataacaaa gcccgagtca tatatgtgga gaaccttctc 3420 ggagaaagcg agaagaaaat ctggcaacaa tggcggacca cctacacaaa ggagtatgaa 3480 gaactggtgg ccattgcaga cgatccacaa gacatcacca gtcaagtgag aatggtgatt 3540 accctggaag atccatacag aggctctact gaagaacaat caagagcata cctggatcta 3600 gagagactag tctgcgacga cataaaggat attcttcctt acctgaacga tttcaaagtt 3660 ctcgcagcta aatctgggcg catgttcacc agcccagagc tctcagaaaa actcttccga 3720 aagctaccac cgctgatcgg aggagaaata gaagccgcat ttaaagagaa gtatcccggc 3780 aatacagtag gagtacttcc caggatagtg ttcatacatc actacctgac tgatctctgc 3840 aagaaggccg caatccaaag aggaattaag gacctcagct tctgcagaaa gttcccgata 3900 cctggctact accagaaatc tcagaagaag tatggactga gaaaaagcca gagctacaag 3960 ggaaaaccac atgacacgca tgtcagagtg gtaaagaaca aggacaaggc aagaagcgtc 4020 aagtgcaaat gcttcatatg tggtgaagaa ggccactttg ccagagaatg caggtccaag 4080 aagggaaaca tagctagagc agcagtggtg gataatctcg atctaccacc agactttgat 4140 gtgctatcct tggatctgaa tgaaagtgac agtgacgcga tctgttcatt ttctgaagga 4200 gaaatcgcga atggggcaag atatgttcaa gaggagttgc acaagctccc atatgagaca 4260 gcccttatgc ttcaaagtca gaacagctgg agaagaacgg tgaaactgcc agcataccaa 4320 gattgttgtg ggcatcaacc aactttgggc ccaaatctga cgtttgagca agcaaaatgc 4380 gcgttctgcg gagtccagac gaacccagaa atgaggatgt actgcgacat atgtaggcta 4440 actgcatgtc ccatgtgctc caaatactac ctggacatac cggtgcgcat gaacaaacca 4500 ccaccacctc caccagagaa caaggacgag cttattcatg agcttgtagt ttacacggag 4560 accttactga aaagggtcaa ggagttggag gaacagctta aggagaagga actggaaatt 4620 gcccgccttg agctgatgat aaatgatgag ggcaagcaag agacagcaga agaaggagaa 4680 gaggcaaact tcatagaaga atcatccaca atccattgtg aggaggatga atttggagcc 4740 tcagcagctg tcacaggaag aaaggtgatc aacaggctat acaacgtgaa gatcctcttc 4800 accatcccaa acgtgaagcc attcacctta aatgcgatag tggatactgg agccacttcg 4860 tgttgtgctg acatccgagc aatcccagaa gaagcattgg aagagttgaa ctacacagtc 4920 aacttcttcg gggtaaactc agagtcccaa gcaaggcaca agataaaagg aggccagatc 4980 tcaatgggag agtcgaattt cagactccca ttcatatacg ccttcaaaat ggactcaaag 5040 gatgaaatcc agatgctctt aggatgcaac ttcctgagaa gcatggccgg aggtgttcgc 5100 ctggaaggta ctaccataac cttctacaaa caaatcacca ccatcaatac tacgctggcg 5160 gtggaatcag cgaagaaggc gataccggaa ttggacctgg atgctgaaat gcttgcagaa 5220 atacaagaac tggtgtatta ccagtctcca gcaagaaatc caaggttcga aagcaggttt 5280 gagggcctca ttggtcgctt aagaaacctg ggctttatcg gggaaaaccc ggtgaaacat 5340 tgggccagaa accaagtgaa gtgcaggcta gagatcatca acccagatct cacaattcaa 5400 gacaagcccc ttaagcacgt cacaccgcaa atggaggccc agtttaaaag gcacactgat 5460 gcattactcc agctgggagt aatacgcccg tccaaaagca ggcacaggac gatggcgatc 5520 atggtgcaat ccggtacaac agtagatccc gctaccggaa aagaaacaag aggcaaagag 5580 aggatggtat acaactacag gtcattgaat gacaacacac acaaagacca gtactccttg 5640 ccagggatca atacaatcct gaagaagatt ggaacttcaa aggtctactc aaagtttgac 5700 ttaaagtcag gcttccatca agtggccatg gatgaagaat ccattccctg gacagctttc 5760 tgtgtcccag gaggattgta tgaatggctt gttatgccat tcggattgaa gaatgctccc 5820 tcagtattcc aaaggaagat ggacgactgc ttcaaaggca cggaggcctt catagccgtc 5880 tacattgatg acattctggt tttttccaag aatgaagagg agcaccagaa gcatctccaa 5940 aagttcctgg agatagtaga aaaggaagga ctagtcctgt cgccaacaaa gatgaagatt 6000 gcagttccgg aagtagaatt cctgggtgca ataattggca actcgactat caagctacag 6060 cctcacataa tcagaaagat tgctgatata ccagaggagc agctaaagga gaagaaaggg 6120 ctacggggat ggcttggtat actaaattat gccaggacat acatacccaa cctgtctacg 6180 ttacttgggc ctctatacca gaagaccagc ccacacggtg acaagagact caaagcccaa 6240 gactacgctt tgattaggca gatcaaggca ctggtccaga acctcccgga cttaaaaatt 6300 cccccagcag actcatacat cgttttggaa acggatggct gcatggaagg atggggcgga 6360 gtgtgcaaat ggaagcccaa caagcacagc ccaaagtcac aggagaaggt ggccgcatat 6420 gccagcggca aatttccggt ggtaaagtcc accattgatg ctgaaataca tgcatgcatg 6480 ggtactctct cagcattaaa aatccactac ttggacagga aggagataac tctgagaaca 6540 gattgccagg caatcgtatc cttccacaac aagatggccc aaaacaaacc ctcaagggta 6600 agatggatca gtttcactga tttcattaca gggctaggaa tcaaggtcaa cattgagcac 6660 atagatggga aggacaacgt ccttgcagat acgctctcaa gattgatctt caagatccaa 6720 gaagaaggtg ctctgatggc actagaaaga agaccagagt gggagcccag accaccacca 6780 agggtcgata acaactctcc catgaacatc atctatgggc tcatccatca ggatcagcag 6840 gagctcataa acagacacaa ggaggcgctt tggcagtcca ctccaaagta cgaaggccca 6900 accggactta tgatcccctt aaacgaagcc caagaatgga gggcttttgc aagaaggatg 6960 aggatcgctc aagcccagaa ggtggacaaa gagctgttag gacttctcca aatggctcag 7020 gataaggccc aatacattga agaccaacgg gccggaaaca attgggctac agacgcttgg 7080 cccaactacc tggaagacgt gaacgtcatt catgacgtaa gaagaaaaat ccagaacata 7140 acacgtcact aaagaacaca gaagcgtgtg gaccccagca gcagctgcac gccaactctg 7200 aagactgctt tatcttttca ggagcacatg cttatgtctc ctcgtctttt agtgtcggca 7260 ccacagttag gtgccacgtt tagtttttga ggaatcatgg ccagctgtgc ctggaccacc 7320 tctactttta gttggaaggt agcgtcggct accattcctt tttctttaag caaggactct 7380 ctgagctgtc gatggggacc attgatcacc cgagctcaac ctccttcgct ataaatagag 7440 tagtttctga tagtttcaga cagacaagga ataaccttga agtctaattc tgtatttgcg 7500 ctacgtctga atataaatag aaaacactcg cttcggcgaa gttttccgat ccaatccttc 7560 cgcccccaat cgtcttattt tcttat 7586 //