ID GQ415660; SV 1; linear; genomic RNA; STD; VRL; 6534 BP. XX AC GQ415660; XX DT 26-OCT-2009 (Rel. 102, Created) DT 01-MAR-2018 (Rel. 136, Last updated, Version 4) XX DE Mamastrovirus 8 isolate NI-295, complete genome. XX KW . XX OS Mamastrovirus 8 OC Viruses; Riboviria; Astroviridae; Mamastrovirus. XX RN [1] RP 1-6534 RX DOI; .1099/vir.0.014449-0. RX PUBMED; 19692544. RA Kapoor A., Li L., Victoria J., Oderinde B., Mason C., Pandey P., RA Zaidi S.Z., Delwart E.; RT "Multiple novel astrovirus species in human stool"; RL J. Gen. Virol. 90(Pt 12):2965-2972(2009). XX RN [2] RP 1-6534 RA Kapoor A., Delwart E.; RT ; RL Submitted (24-JUL-2009) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270, Masonic Ave, San RL Francisco, CA 94118, USA XX DR MD5; 3538a8aced1789b83ae71c674db2bc9d. DR EuropePMC; PMC2796194; 19692544. DR EuropePMC; PMC3502403; 22998755. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..6534 FT /organism="Mamastrovirus 8" FT /host="Homo sapiens" FT /isolate="NI-295" FT /mol_type="genomic RNA" FT /country="Nigeria" FT /isolation_source="stool" FT /collection_date="21-Mar-2007" FT /db_xref="taxon:1239572" FT CDS join(43..2657,2660..4232) FT /codon_start=1 FT /ribosomal_slippage FT /product="non-structural protein" FT /note="ORF1ab" FT /db_xref="GOA:D0U6L0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D0U6L0" FT /protein_id="ACX85471.1" FT /translation="MERSYKPRGLNIYDPYDRVLQHGSKSARIKGIQLDKVSGNKLADI FT FSDGGPLCFGYGVLEMVKVDTGSVQPVTTPVKTVYVSGVLAGNEYVTYCFKPGVNQWVE FT VDPDIHQPTALVGTLYQEYKKLVQSERELKETKSGLQLEISLLRHELERSRPTVRTLRP FT YKMANIVFFGLLLGLLMAHAVTGFRTGQCLDSDVSETLKPQTCINWKWDGGIAPDTEVP FT LVERAYAWYIGVKQQMKEYYNDSVIVEWSVYVFKMLCSWTSVAVTIGVFYMIKSENPMY FT MMLTLMLATLSRIQLMAVAAIPGMEITSTFSLWCCMIVYYFNQAAAMASAIYYSFQCVM FT SSCMFMSDIEYVQVLRGHAVVVFTIICSHIFHILQIPSWVTVLIMVLYRVVRLTSVVIG FT EKIEVRNLDGKVVNTITTQTSWLNKVSKFVQSKFKQNVRVGVSSTARVVPNGVLVVEAK FT DNIGTGFRVQNYVVTAAHVVGSETQVRLKWGDVSAFAKVVYIHPSKDVAYLSLPPEMQN FT LPTYKFAKAVADGTIVITSLEDCGVLAVAITEGVVVSNNMTYAVCTKNGMSGSPVTNVD FT GRVIGVHQTNTGFTGGAVIIRQEDLPPQKKPQRELELEEKVKQLEEALAGKMNQKFSED FT QVIELIRMAVGREIGILRHELSMNQAKGKNKGKKRGNVKRKRRRMWTEEEYKELLEKGF FT TRQQLRDMAETLREAEYTDTESEEYESGYPAWSDPEDSDEIDREWFGPKKKILDEVDSG FT WSKGDFWEQCQKVWKETEPMSEEQVNTLPSHLHEKYGLTCYVITKADMEALAKDLLKYQ FT SLVEDKIKNNVVRGQWIDGVDPKVIINELDELWLGINHIMWENGLVPFTQRRKVNKRKN FT QNLKGGAQGEPPTKEQLTLSYWENMLEPGDYYLTPPTYPLLGILPINRPICDYDEPIDD FT LLNLLPSYDDDMSYGPTIWGPEAYVKSFEKFTYKEPMSNIKDKYKREWNFAMRVLRREF FT DYLVDSVMTDITATSKNSDSTPSYPKCLWWKTEAEYLKDRGYQDYITQLESIKKGERPR FT VLWYLFLKKEILKLSKIEDGDIRQIVCSDPIFARIGCVFEEHQNNLMKMRTKTRMGQCG FT WSPFCGGFNDRVKRLVDKGNNLFVEFDWTRYDGTIPNEVFMAIKQFRYSCLAEEFKTEE FT NLSIYKWYCESILDRYVMLPSGEVTKQVRGNPSGQVSTTMDNNLCNVFFQAFEYAYMHP FT DKDISQLMHDWEKVDSLIYGDDRLSTYPELPEDYVDRVVDMYATVFGMWVKPEKVKISN FT SIIGLTFCGFTVTESNGIYVPVPTETEKLMAGLVRPTKRLPDILSLYGKLLCYRILSHN FT LPDDHKFKNYILVALEVVARHIRASGGEEPYYITDGMLDRLWRGGPKRGDGW" FT CDS 43..2667 FT /codon_start=1 FT /product="non-structural protein" FT /note="ORF1a" FT /db_xref="GOA:D0U6L1" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D0U6L1" FT /protein_id="ACX85470.1" FT /translation="MERSYKPRGLNIYDPYDRVLQHGSKSARIKGIQLDKVSGNKLADI FT FSDGGPLCFGYGVLEMVKVDTGSVQPVTTPVKTVYVSGVLAGNEYVTYCFKPGVNQWVE FT VDPDIHQPTALVGTLYQEYKKLVQSERELKETKSGLQLEISLLRHELERSRPTVRTLRP FT YKMANIVFFGLLLGLLMAHAVTGFRTGQCLDSDVSETLKPQTCINWKWDGGIAPDTEVP FT LVERAYAWYIGVKQQMKEYYNDSVIVEWSVYVFKMLCSWTSVAVTIGVFYMIKSENPMY FT MMLTLMLATLSRIQLMAVAAIPGMEITSTFSLWCCMIVYYFNQAAAMASAIYYSFQCVM FT SSCMFMSDIEYVQVLRGHAVVVFTIICSHIFHILQIPSWVTVLIMVLYRVVRLTSVVIG FT EKIEVRNLDGKVVNTITTQTSWLNKVSKFVQSKFKQNVRVGVSSTARVVPNGVLVVEAK FT DNIGTGFRVQNYVVTAAHVVGSETQVRLKWGDVSAFAKVVYIHPSKDVAYLSLPPEMQN FT LPTYKFAKAVADGTIVITSLEDCGVLAVAITEGVVVSNNMTYAVCTKNGMSGSPVTNVD FT GRVIGVHQTNTGFTGGAVIIRQEDLPPQKKPQRELELEEKVKQLEEALAGKMNQKFSED FT QVIELIRMAVGREIGILRHELSMNQAKGKNKGKKRGNVKRKRRRMWTEEEYKELLEKGF FT TRQQLRDMAETLREAEYTDTESEEYESGYPAWSDPEDSDEIDREWFGPKKKILDEVDSG FT WSKGDFWEQCQKVWKETEPMSEEQVNTLPSHLHEKYGLTCYVITKADMEALAKDLLKYQ FT SLVEDKIKNNVVRGQWIDGVDPKVIINELDELWLGINHIMWENGLVPFTQRRKVNKRKN FT QKT" FT CDS 4222..6417 FT /codon_start=1 FT /product="capsid" FT /note="ORF2" FT /db_xref="GOA:D0U6L2" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D0U6L2" FT /protein_id="ACX85472.1" FT /translation="MAGKQPQHAATKAAIKAVAKEVVKEEKKAFKPRQQNKSTRNKFRN FT KWQTKHQVKNEIKTELKKKGLEGPKTKFTVKVSATIGKIGPNVNSGPELQISTFMHPAL FT MKEPNDGTNFGPLQAAAAQWGLWRLSDLKIQFTPLVGSSAVTGSVYRTSLNLTQSPGST FT SWGGLGARKHLDIPVGVSRTWHLRKGDLAGPRETWWLTDTNEEGGQSCGPMLEVHGLGK FT TTSTYKDEAWRGDLFIVEVTGVWQFTNYNAKPALGTLNRVVEDTTATIEVGTDGIMKMS FT IPSTGQLARHMSEQNERASNAANTIGETIWQVVDQGAGLVASVAPEPFGWLIKGGWWFV FT KKLIGRANTTTEQYYVYASLADAQNNKPVEANTFAASSHATTLAVTQINAPNTGPSTAS FT AVVQSRMFPLPQAGIPDGWFWLSGQFEALHMVGLNGTNGSALPCGMITSFDKWEFKLKK FT GTVEWGCAMQGMAAASNTVTCWSVDRENQLLGWYDVSGIASTGIVVDWVTGPNGGTVHL FT DWADVLAWRTDLWGTLRMTYWLCRTRRAVQGSDFDTTQKSPSPYIARAWPETISNVRLD FT VREVLMVNTTTNATDSNSRVQYIQRVPAGAIVILWCLGNHTFDTSTGQGSIVQKSSFGG FT FGQLPSKSSTTGLWSRALNSVGPSTDWITVSFDSHPPVCDDVVSRLMAEIADRYDLEPR FT RKKPKDATKELTRLKIYEALREADWEHLPAEEVSSVL" XX SQ Sequence 6534 BP; 1963 A; 1207 C; 1638 G; 1726 T; 0 other; ccaagtaggg tttggtgcct ttgggcatct ggtgggttag ctatggagcg ttcctataaa 60 ccaaggggtc ttaatatcta tgacccttat gaccgtgttt tgcaacacgg gagtaagagt 120 gccagaataa aagggattca actggacaag gtttcaggga ataagttggc agacatattc 180 tcagatggtg gcccattgtg ttttggttat ggagttctgg aaatggttaa ggttgatact 240 ggttcagtgc agccagtaac tacaccagta aaaaccgtgt acgtctcagg tgtccttgcg 300 ggcaatgagt acgttaccta ctgcttcaaa cctggtgtta accagtgggt tgaagtggat 360 ccagatatac atcaaccaac ggctttggtg ggtacactgt atcaggaata caaaaagctg 420 gtccagtctg aaagggaatt gaaagaaact aagtcaggac tacaattaga aatatccctt 480 ttaaggcatg aattggaacg ctccagaccc actgttagaa ccctacgccc atacaaaatg 540 gctaacatag tgttttttgg attgctattg ggattgttaa tggcacatgc agtcacaggt 600 tttagaacag gacaatgcct tgattcagat gtaagtgaaa cattgaagcc ccagacctgt 660 attaactgga aatgggatgg tggtatagct ccagataccg aggtaccact ggttgagagg 720 gcatatgcat ggtacatagg agttaaacag cagatgaagg aatactataa tgatagtgtt 780 atagtagagt ggtctgtgta tgtgttcaaa atgttatgtt catggacatc agttgcagtg 840 accatagggg ttttctatat gatcaaatca gagaatccca tgtatatgat gttaacacta 900 atgctggcta cactatcaag gatacagcta atggcagttg ctgccatacc tggaatggaa 960 ataacatcaa cattttcatt gtggtgctgt atgatagtgt actactttaa tcaagcagct 1020 gcgatggcat ctgcaattta ttatagcttt cagtgtgtta tgtcctcctg catgttcatg 1080 agtgacattg aatatgtaca agttttgaga ggccatgcag tggttgtttt taccataatt 1140 tgttcccata ttttccatat tttacaaata ccatcctggg ttactgtttt aataatggtt 1200 ctatataggg tggtaaggct aactagtgtt gtgattgggg agaaaattga ggttaggaac 1260 ctcgatggta aggtggttaa tacaatcaca acacagacat catggcttaa taaagtctcc 1320 aaatttgtgc aaagcaaatt taaacaaaat gttagggtgg gtgtttcatc aactgctcga 1380 gttgtaccaa atggggtatt agttgtggag gccaaggata acattgggac tggctttaga 1440 gtgcaaaact atgttgttac agcagcacac gttgttggta gtgaaaccca ggttcgccta 1500 aaatggggtg atgttagtgc atttgctaag gttgtttata tacatcctag caaggatgtg 1560 gcatatttaa gtttgccacc tgaaatgcag aacctaccaa cgtacaagtt tgcaaaagcc 1620 gtcgctgatg ggactatagt cattacctca ttagaggatt gtggggtttt ggctgttgcc 1680 atcacagaag gtgttgtcgt ctctaacaac atgacatatg ctgtgtgtac taaaaatggc 1740 atgagtgggt caccagttac caatgttgat gggcgcgtta ttggtgttca tcagacaaac 1800 actgggttta ctggtggtgc agtcattata cgccaggaag acctcccacc ccaaaagaag 1860 ccacaacgtg agttggagct ggaggagaag gttaaacaac ttgaggaagc cttagcagga 1920 aaaatgaacc aaaaattcag tgaagaccag gtcatcgaat tgataaggat ggccgttggt 1980 agagaaattg gaatattacg ccatgaattg tctatgaatc aagccaaagg taaaaataag 2040 ggcaagaagc gtggcaatgt caaacgtaag aggaggagga tgtggactga agaagagtac 2100 aaagagcttc tagaaaaagg cttcaccaga cagcagctgc gggatatggc tgagacgctg 2160 cgtgaggcag aatacactga cactgagagt gaggaatatg aatcaggtta tcctgcttgg 2220 tctgatccag aagattctga tgagatagat cgagaatggt ttggacctaa aaagaagata 2280 cttgatgagg ttgattctgg atggtccaaa ggagacttct gggaacagtg tcaaaaagtg 2340 tggaaggaaa ctgaaccgat gagtgaggag caagtaaata ctcttccatc acacctacat 2400 gagaagtatg gtttgacatg ttacgttatc acaaaagcag acatggaggc attggctaaa 2460 gatttgctaa agtatcaatc attggttgaa gataaaataa agaacaatgt ggtcaggggc 2520 caatggattg atggtgtgga tcccaaggtg attataaatg aattggatga actgtggctt 2580 ggtatcaatc acataatgtg ggagaatgga cttgtcccat ttacccaacg ccgcaaggtc 2640 aataagagaa agaatcaaaa aacttgaaag ggggggctca aggtgagccc ccaacaaaag 2700 aacaattaac tctttcttat tgggaaaata tgttggagcc aggggactat tatctcaccc 2760 ctccaacata ccctttattg ggtattttac caattaatcg accaatatgt gattatgatg 2820 agccaattga tgatttgcta aatttgttgc caagttatga tgatgatatg tcatatggtc 2880 caacaatttg gggccctgaa gcctatgtca agtcatttga aaagtttaca tataaggaac 2940 caatgagtaa catcaaggac aaatataaga gagagtggaa ttttgccatg agagtcttga 3000 ggagggaatt tgattaccta gttgatagtg tgatgacaga catcacagca acatctaaga 3060 attcagactc cacaccctcc tatccaaaat gcctgtggtg gaaaacagag gctgaatact 3120 taaaggacag aggttaccaa gattacataa cacagctgga atccataaag aaaggtgaaa 3180 ggcccagagt cctctggtat ttgttcctca agaaagaaat cctaaagctt agcaaaattg 3240 aggatgggga tatacgacaa atcgtgtgtt cagatccgat atttgcgcgc attgggtgtg 3300 tttttgagga acatcagaac aacctaatga agatgaggac aaagacccgc atggggcaat 3360 gtggctggtc cccattctgt ggtggcttca atgatcgtgt caagagattg gtggataaag 3420 gcaacaatct gtttgttgag tttgattgga cacgatatga tggtacaata ccgaatgaag 3480 tgtttatggc aattaaacag tttaggtact catgtttagc tgaggagttt aagacagagg 3540 aaaacttgag tatctacaaa tggtattgtg agagtatact agataggtac gtcatgttac 3600 cttctggcga agtcaccaaa caggttaggg ggaacccttc aggtcaggtg tcaacaacta 3660 tggacaataa cttgtgtaat gtcttcttcc aagcgtttga atacgcgtac atgcatcctg 3720 ataaggatat aagtcaactt atgcatgact gggagaaggt tgattcactt atttatggtg 3780 atgataggtt gtctacttat cctgagctgc ctgaagatta tgtagacaga gttgttgaca 3840 tgtacgccac agtgtttgga atgtgggtca aacctgaaaa agtgaaaatc tcaaacagta 3900 taataggcct tacattttgt ggttttacag tgacagaatc aaatgggatt tatgtcccag 3960 tccccacaga aacagagaaa ctcatggctg gactagtgcg accaactaaa agattacccg 4020 acattttatc gctgtatggg aaactccttt gctaccgcat actaagtcac aatctgccag 4080 atgaccacaa atttaaaaat tacatcttgg tggccttaga agttgtggct aggcacatcc 4140 gtgctagtgg aggtgaagag ccttactata ttacggatgg tatgctggat agactttgga 4200 ggggcggacc aaagcgtgga gatggctggt aagcagcccc agcatgctgc aactaaggct 4260 gccattaagg cagttgctaa agaggttgtc aaggaggaga agaaagcatt caaacccaga 4320 cagcaaaata aaagcactag gaataagttt agaaataaat ggcaaactaa acatcaagtt 4380 aagaatgaaa ttaagactga acttaagaag aaaggacttg agggacccaa gacaaaattt 4440 acagttaagg tctcagcaac aatcggaaaa attggaccaa atgtaaattc agggcctgaa 4500 ttacaaattt caacatttat gcatcctgct ttaatgaaag agccaaatga tggcaccaat 4560 tttggcccat tgcaagctgc agccgctcag tggggtttgt ggagactatc agacctcaag 4620 atacaattta caccactcgt gggttcatcg gctgtaaccg gctcagtgta ccgcacatct 4680 ttgaacctaa cgcaatcccc tggatccaca tcttggggtg gcttaggtgc ccggaaacac 4740 ctggatatcc cagttggggt gtcacggaca tggcacttaa ggaaaggtga ccttgcggga 4800 cccagagaga catggtggtt aacagacacc aatgaagagg gaggacaaag ttgcggtccc 4860 atgcttgaag tccatggcct cggtaaaaca acctcaactt ataaggatga agcctggaga 4920 ggtgatctct ttatagttga ggttacagga gtatggcagt ttacaaacta taatgccaag 4980 cctgctttgg gaacactgaa cagggtggtt gaggacacca cagcgactat tgaggtcggt 5040 acagatggca taatgaagat gtcaatacca tctactgggc agctagcacg ccacatgtca 5100 gagcaaaatg aaagggcatc aaatgcagcg aacacaattg gtgagaccat atggcaggtt 5160 gttgaccaag gagctggtct tgttgctagt gttgcacctg agccttttgg ctggctcatc 5220 aagggtggtt ggtggtttgt caagaaactg attggtaggg ctaacaccac cactgaacaa 5280 tactatgttt atgcttcact agcagatgca caaaacaaca aaccagttga agcaaatacc 5340 tttgctgctt caagccatgc tacaacactg gctgttactc agataaatgc ccctaacact 5400 gggccaagca cagcctcagc ggttgtccaa tccagaatgt ttcccctacc acaagcgggg 5460 attcccgatg gttggttttg gctcagtggg caatttgaag ctttgcatat ggttggtcta 5520 aatggcacca acggatctgc tcttccatgt ggtatgatta catcatttga caaatgggag 5580 ttcaaactaa agaaaggcac tgttgagtgg ggatgtgcta tgcaaggaat ggcagcagca 5640 agcaacactg ttacttgctg gtcagttgat cgtgaaaatc agcttttggg ttggtacgat 5700 gtcagcggca ttgcttcaac tggcattgtt gttgattggg tgactggccc aaatggtggc 5760 actgtgcatt tggattgggc cgatgtcctt gcttggagga cagatttgtg ggggacactc 5820 cgcatgacat actggttgtg tcgaactaga agagccgtgc aaggctctga ctttgacaca 5880 acacagaaga gcccgtcgcc ttatatcgcg cgggcttggc ctgagacaat aagtaatgtc 5940 aggcttgatg ttcgggaggt tttgatggtc aatacaacca ccaatgctac cgattcaaat 6000 agccgagtcc aatatatcca aagagtgcca gctggcgcca tagtcatact ctggtgcctt 6060 gggaatcaca catttgacac atcaactggc caaggttcca ttgtccaaaa gtcctcattt 6120 ggtggatttg gacagctgcc tagtaagtca tctactactg gtttgtggtc tcgtgcactt 6180 aattcagttg gtccatccac cgattggatt actgtgtctt ttgactcaca tccaccagtt 6240 tgtgatgatg ttgtttcaag gctgatggct gaaattgctg acaggtatga ccttgagccc 6300 cgcagaaaga agcctaagga tgcaaccaaa gagctaacca ggctcaaaat ctatgaagca 6360 cttagagaag ctgattggga acacctgcct gcagaggagg tgagctcagt gctttgaatt 6420 ccgccgaggc cacgccgagt aggatcgagg gtacagcgga ctattgattg cttgtggaat 6480 gaattagttt atgattataa tctgttcatt tgatcattag tgaatttgat tctc 6534 //