ID GQ415401; SV 1; circular; genomic DNA; STD; VRL; 2719 BP. XX AC GQ415401; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate I_KE_Jic13_KPC, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2719 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2719 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; ad8198e85d0e0f0b3a76ddce9bf6f95d. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2719 FT /organism="Panicum streak virus" FT /host="Panicum trichocladum" FT /isolate="I_KE_Jic13_KPC" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collection_date="1997" FT /db_xref="taxon:10826" FT CDS 147..473 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW47" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW47" FT /protein_id="ADA67981.1" FT /translation="MEASGQYSSQPYPVSPRVPSAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLVKAQRGRSTEELIFGPGERPPVASADGSRPVPVPSPSCPPVPS FT PFVG" FT CDS 484..1227 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW48" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW48" FT /protein_id="ADA67982.1" FT /translation="MAGALKRKRSDEVAWSRRKPAKKPARAPPPRAGPSVRRGLPALQI FT QTLVAAGDTMITVANGGICSPLVTYSRGSDEGNRHTNETLTYKIALDYHFVLSSAACKH FT ASRAVGVVWLVYDAQPTGNAPQVKDIFPHGDTLSAFPYTWKVGREVCHRFVVKRRWTFT FT MESNGRIGSDTPPANAAWTPVKRSIYFHKFCTGLGVKTEWKNVTDGGVGAIKKGALYIV FT IAPGNGLDFTAHGQCRLYFKSVGNQ" FT CDS complement(1574..2581) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW49" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW49" FT /protein_id="ADA67983.1" FT /translation="METTVDSSQTGRHTVRSFRHRNVNTFLTYSKCPLEPEFIGEHLFR FT LTKDFDPAYILVVRETHIDGTWHCHALLQTTRPVSTSDERYFDIDRYHPNIQSAKSTDK FT VRSYILKDPKEKWEKGTYIPRKKSFSPPGKEPSEKKPSKDEVMREIMTHATSREEYLSM FT VQSALPYDWATKLSYFEYSASRLFPDIAEPYTNPHEATDIDLLCNETVQDWLEPNIYQV FT SPQAYMLLEPSCLSREQAIADLQWLSETTRLFQDQEREASTSSAQHGQVKHHGPEASDD FT TTIGRTISTGLHMMKKLSTMSSTTFPSSSVRAGSSSSAVKKTTSSTPSTGNDGR" XX SQ Sequence 2719 BP; 532 A; 703 C; 763 G; 721 T; 0 other; taatattaca gctcacactc catgcgaggg gcccaagccc cgagcggtcc ccgtttgctt 60 tgttctaggt ggatttcctt tagctgcggt tctttagcag ccgggtccat tgtcctataa 120 gatgcttctc ggagtgcgat ctactcatgg aggccagtgg ccagtactcg tctcagcctt 180 atcctgtctc gcctcgggta ccctctgcag ctccgtccgc cggaggtctg ccgtggagtc 240 gcgtcggtga gatagctatc tttacctttg ttgctgttct ggctttgtac ctgctgtggc 300 tttgggtcct tagagatctt atcttacttg tgaaggctca gcgcggtcgc tctacggagg 360 agctgatctt tggtcctggt gagaggcccc ccgtcgcttc tgccgacggt tctcgtcctg 420 ttccggttcc gtcgccttct tgtccgccgg tacctagccc ttttgtgggc tagagcactc 480 agcatggccg gggcgttgaa gcgcaagagg tccgatgagg ttgcctggag tcgaaggaag 540 cctgccaaga agcctgcccg cgccccccct ccgcgggctg gcccatccgt caggagggga 600 ctccctgccc ttcagatcca gaccttggtg gctgccggtg acactatgat cacagtggcc 660 aacggcggta tctgctctcc gcttgtgacc tactctcgtg ggtccgatga gggtaaccgc 720 cataccaacg agactctgac gtacaagata gccttggact accattttgt gttgtcctcg 780 gcggcctgca agcatgccag tcgcgctgtt ggcgtggtct ggttggtcta tgatgcgcag 840 ccgaccggca atgccccgca agtgaaggac atcttccctc acggcgatac gctgtccgcc 900 ttcccgtaca cttggaaggt tgggagggag gtgtgccatc gcttcgtggt gaagcggcgg 960 tggactttca cgatggagag caacggcaga atcggttcgg atacgcctcc tgcgaatgct 1020 gcttggacgc ccgtgaagcg ctccatctac ttccacaagt tctgcactgg actcggggtg 1080 aagacggagt ggaagaacgt gacagacggt ggtgtcggcg ccattaagaa gggcgccttg 1140 tacattgtaa ttgctccggg caacggcctg gacttcacgg ctcacggcca gtgccgtctg 1200 tactttaagt cagtcgggaa tcagtgattc ccacattata taataaaaac ttgtttttat 1260 tccagacatc agcattgaaa atgcgtacat tacattacat agtcggcagt tttgccgacg 1320 aaaaacacac acatagtgca gcctcgggct aaagaccgag tctcaaacga ccccacttaa 1380 aaacaaatca gaagaagcaa gatatatatt aaattgcagc cgccggctta ggagggggtg 1440 taccacttct ccccctcctg cattacgtag atctcgcagt tttcgtagaa gtactcatac 1500 tgcgccggag tcatgtcctt catccagtcc tcatccttgt tggcgaggat gatcgtgggg 1560 atgctcttct tggctacctt ccgtcgtttc ccgtacttgg ggttgacgat gtagtctttt 1620 tgacagccga cgagctgctt ccagcacgga cagaacttga agggaatgtc gtcgacgaca 1680 ttgtagagag cttcttcatc atatgaagac cagtcgatat tgttctgcca atagttgtgt 1740 cgtccgaggc ttctggccca tgatgtttta cctgtccgtg ttgggccgac gatgtagagg 1800 cttctctttc ttgatcctgg aagagcctag tagtttcgga gagccattgc aagtcagcaa 1860 ttgcctgttc tcggcttaag cagctaggtt ctaagagcat gtaggcctga ggactgacct 1920 ggtatatatt gggctcaagc cagtcctgga cggtttcatt gcagaggagg tcaatgtctg 1980 tggcttcatg aggattggtg tagggctctg caatgtctgg gaagaggcga ctagctgagt 2040 actcaaagta tgacagtttt gtggcccagt catagggcag tgcactctgc accattgaaa 2100 ggtactcctc tctagatgtt gcgtgcgtca tgatttctct catgacctca tccttgctag 2160 gcttcttctc agatggttcc ttacctggtg gggagaagga cttcttcctg ggtatgtatg 2220 tacctttctc ccacttctct ttcggatcct tcaggatgta agatcgcacc ttgtcggtgc 2280 tcttggcgct ctgaatattg gggtggtatc gatctatgtc gaagtagcgc tcgtcgcttg 2340 tgcttactgg tctggtggtt tgaaggagag catggcagtg ccatgtccca tctatgtgtg 2400 tctctctgac tactaagatg taggctgggt caaagtcctt ggtgagtctg aagagatgct 2460 caccgatgaa ctctggttct agtggacact tgctgtatgt gaggaaggtg ttcacgttcc 2520 gatgccgaaa ggatcggacg gtgtgcctac cagtctggga ggaatcgacg gtagtctcca 2580 tttgcgcaga ggtgatggca gactcagact cccccaaact ctatccctag acagctgcga 2640 aataatccgc caccagccga gtgcctttta tagctgggta agtgggctgg gccggccggc 2700 ccatggagtg tgagcagca 2719 //