Dbfetch
ID GQ415400; SV 1; circular; genomic DNA; STD; VRL; 2716 BP. XX AC GQ415400; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate I_KE_Nra2_g375, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2716 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2716 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; ea41299c398180a4c0dd9f36f71818d7. XX FH Key Location/Qualifiers FH FT source 1..2716 FT /organism="Panicum streak virus" FT /host="Brachiaria deflexa" FT /isolate="I_KE_Nra2_g375" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.18 N 37.05 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 146..472 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW41" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW41" FT /protein_id="ADA67978.1" FT /translation="MEASGQYSSQPYPVSPRVPSAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLLKAQRGRSTEELIFGPGERPPVASADGSRPVPVPSPSCPPVPS FT PFLG" FT CDS 483..1226 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW42" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW42" FT /protein_id="ADA67979.1" FT /translation="MAGALKRKRSDEVAWSRRKPAKKPARAPPPRAGPSVRRGLPALQI FT QSLVAAGETMITVPNGGICSPIVTYSRGSDEGNRHTNETLTYKIALDYHFVLSSAACKY FT ASRAVGVVWLVYDAQPTGNAPQVKDIFPHGDALSAFPYTWKVGREVCHRFVVKRRWTFT FT MESNGRIGSDTPPENAAWTPVKRSIYFHKFCTGLGVKTEWKNVTDGGVGAIKKGALYIV FT IAPGNGLDFTVHGQCRLYFKSVGNQ" FT CDS complement(1570..2577) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW46" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW46" FT /protein_id="ADA67980.1" FT /translation="METTVESSQTGRHTVRSFRHRNVNTFLTYSRCPLEPEFIGEHLLR FT LTKDYDPAYILVVRETHIDGTWHCHALLQTTKPVSTSDERYFDIDRYHPNIQSAKSTDK FT VRAYILKDPKDKWEKGTYIPRKKSFSPPGKEPSEKKPSKDEIMKEIMTHATSREEYLSM FT VQSALPYDWATKLSYFEYSASRLFPDIAEPYTNPHENTDIDLLCNETVQDWLEPNIYQV FT SPQAYMLLEPSCLSREQAIADLQWLSETTRLFQEQEREASTSSAQHGQVKHHGPEASDD FT ITIGRTISTGLHMMKKLSTMSSTTFPSSSVRAGSSSSAVKKTTSSTRSTGNDAK" XX SQ Sequence 2716 BP; 532 A; 691 C; 750 G; 743 T; 0 other; taatattaca gctcacactc catgcgaggg gtcctacccc gagcggtcct cgtttgcttt 60 gttctaggtg gatttcttta gatgcggttc tttagcagcc gcactccttt gtcctataag 120 atgctcctcg gagtgcgatg tactcatgga ggccagtggc cagtactcgt ctcagcctta 180 tcctgtctcg cctcgggtac cctctgcagc tccgtccgcc ggaggtctgc cgtggagtcg 240 cgtcggtgag atagctatct ttacctttgt tgctgttctt gctttgtacc tgctgtggct 300 ttgggtcctt agagatctta tcttacttct gaaggctcag cgcggtcgat ccacggagga 360 gctgatcttt ggtcctggtg agaggccccc tgtcgcttct gccgacggtt ctcgtcctgt 420 cccggttccg tcgccgtcct gtccaccggt acctagtcca tttttgggct agagcactca 480 gcatggccgg ggcgttgaag cgcaagaggt ccgatgaggt tgcctggagt cgaaggaagc 540 ctgccaagaa gcctgcccgc gcccctcctc cgcgggctgg cccatccgtc aggaggggac 600 tccctgccct ccagattcag tccttggtgg ctgccggtga gactatgatc acggtgccta 660 acggcggcat ctgctctccg attgtgacct actcccgtgg gtccgatgag ggtaaccgcc 720 ataccaacga gactctgacg tacaagatag ccttggacta ccattttgtg ctgtcctcgg 780 ctgcctgtaa gtatgccagt cgcgctgttg gcgtggtctg gttggtctat gatgcgcagc 840 cgaccggcaa tgccccgcaa gtgaaggaca tcttccctca cggcgatgcg ctgtccgcct 900 tcccgtacac ttggaaggtt ggtagggagg tctgccatcg cttcgtggtt aagcggcggt 960 ggactttcac gatggagagc aacggcagaa tcggttcgga cacacctcct gagaatgctg 1020 cttggacgcc cgtgaagcgt tccatctact tccacaagtt ctgcactgga ctcggggtga 1080 agacggagtg gaagaacgtg acagacggtg gtgtcggcgc cattaagaag ggcgccttgt 1140 atattgtaat tgctccgggc aacggcctgg acttcacggt tcacggccag tgccgtctgt 1200 actttaagtc agttgggaat cagtgattcc cacaaaatta ataaaaactt gtttttattc 1260 caatcccagc atttaaaatg cgtacattac attacatagt cggcagattt gccgacgaaa 1320 aacacacaca tagtgcagcc tcgggctaaa gaccgagtct caaacgaccc caaattaaaa 1380 aaatcagaag aagcaagata tatattaaat tgcagccgcc ggcttaggag ggggtgtacc 1440 acttttcccc ctcctgcatt acgtagatct cgcagttttc gtagaagtac tcatactgcg 1500 ccggagtcat gtccttcatc caatcctcat ccttgttggc gaggattatt gtggggatgc 1560 tcttcttggc tactttgcgt cgtttcccgt acttcgggtt gacgatgtag tctttttgac 1620 agccgacgag ctgcttccag cacggacaga acttgaaggg aatgtcgtcg acgacattgt 1680 agagagcttc ttcatcatat gaagaccagt cgatattgtt ctgccaatag ttatgtcgtc 1740 cgaggcttct ggcccatgat gttttacctg tccgtgttgg gccgacgatg tagaggcttc 1800 tctttcttgc tcctggaata atctagtagt ttcagagagc cattgcaagt cagcaattgc 1860 ctgttctcgg cttaagcagc taggttctag gagcatgtag gcttgaggac tgacctggta 1920 tatgttgggc tcaagccagt cctggacggt ttcgttgcag aggaggtcaa tgtctgtgtt 1980 ttcgtgagga ttggtgtagg gctctgcaat gtctgggaag aggcgactag ctgagtactc 2040 aaagtatgac agttttgtgg cccaatcata gggcagtgca ctctgcacca ttgaaaggta 2100 ctcctctcta gaggttgcgt gcgtcatgat ttctttcatg atctcatcct tgctaggctt 2160 cttctcagat ggttctttac ctggcggtga gaaggacttc ttcctgggta tgtatgtacc 2220 tttctcccac ttgtccttcg gatccttcag gatgtaagct cgcaccttgt cagtgctctt 2280 ggcgctctga atgttggggt ggtatcgatc tatgtcgaag tagcgctcgt cgctcgtgct 2340 tactggcttg gtggtctgaa ggagagcatg gcagtgccat gtcccatcta tgtgtgtctc 2400 tctgactact aggatgtagg ctgggtcata gtccttggtg agtcttaaga gatgctcacc 2460 gatgaactct ggttctagtg gacatctgct gtatgtgagg aaggtgttca cgttccgatg 2520 ccgaaaggat cggacggtgt gccttccagt ctgggaggat tcgacggtag tctccatttg 2580 cgcagaggtg atggcagact cagactctcc caaactctat ccctagacag ctgcgaaata 2640 atccgccacc agccgagtgt ctttttatag ccggataggt gggctgggcc ggccggccca 2700 tggagtgtga gcagca 2716 //