ID GQ415399; SV 1; circular; genomic DNA; STD; VRL; 2717 BP. XX AC GQ415399; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate I_KE_Nra1_g374, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2717 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2717 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; d223403a1c913d9549b0dd5df9f4839f. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2717 FT /organism="Panicum streak virus" FT /host="Brachiaria deflexa" FT /isolate="I_KE_Nra1_g374" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.18 N 37.05 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 147..473 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW41" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW41" FT /protein_id="ADA67975.1" FT /translation="MEASGQYSSQPYPVSPRVPSAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLLKAQRGRSTEELIFGPGERPPVASADGSRPVPVPSPSCPPVPS FT PFLG" FT CDS 484..1227 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW42" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW42" FT /protein_id="ADA67976.1" FT /translation="MAGALKRKRSDEVAWSRRKPAKKPARAPPPRAGPSVRRGLPALQI FT QSLVAAGETMITVPNGGICSPIVTYSRGSDEGNRHTNETLTYKIALDYHFVLSSAACKY FT ASRAVGVVWLVYDAQPTGNAPQVKDIFPHGDALSAFPYTWKVGREVCHRFVVKRRWTFT FT MESNGRIGSDTPPENAAWTPVKRSIYFHKFCTGLGVKTEWKNVTDGGVGAIKKGALYIV FT IAPGNGLDFTVHGQCRLYFKSVGNQ" FT CDS complement(1572..2579) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW43" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW43" FT /protein_id="ADA67977.1" FT /translation="METTVGSSQTGRHTVRSFRHRNVNTFLTYSKCPLEPEFIGEHLFR FT LTKDYDPAYILVVRETHIDGTWHCHALLQTTKPVSTSDERYFDIDRYHPNIQSAKSTDK FT VRAYILKDPKDKWEKGTYIPRKKSFSPPGKEPSEKKPSKDEIMKEIMTHATSREEYLSM FT VQSALPYDWATKLSYFEYSASRLFPDIAETYTNPHESTDIDLLCNETVQDWLEPNIYQV FT SPQAYMLLEPSCLSREQAIADLQWLSETTRLFQEQEREASTSSAQHGQVKHHGPEASDD FT ITIGRTISTGLHTMKKLSTMSSTTFPSSSVRAGSSSSAVKKTTSSTRSTGNAAK" XX SQ Sequence 2717 BP; 529 A; 696 C; 756 G; 736 T; 0 other; taatattaca gctcacactc catgcgaggg gtcctacccc gagcggtcct cgtttgcttt 60 gttctaggtg gatttccttt agctgcggtt ctttagcagc cgcactcctt tgtcctataa 120 gatgctcctc ggagtgcgat ctactcatgg aggccagtgg ccagtactcg tctcagcctt 180 atcctgtctc gcctcgggta ccctctgcag ctccgtccgc cggaggtctg ccgtggagtc 240 gcgtcggtga gatagctatc tttacctttg ttgctgttct tgctttgtac ctgctgtggc 300 tttgggtcct tagagatctt atcttacttc tgaaggctca gcgcggtcga tccacggagg 360 agctgatctt tggtcctggt gagaggcccc ctgtcgcttc tgccgacggt tctcgtcctg 420 tcccggttcc gtcgccgtcc tgtccaccgg tacctagtcc attcttgggc tagagcactc 480 agcatggccg gggcgttgaa gcgcaagagg tccgatgagg ttgcctggag tcgaaggaag 540 cctgccaaga agcctgcccg cgctcctcct ccgcgggctg gcccatccgt caggagggga 600 ctccctgccc ttcagattca gtccttggtg gctgccggtg agactatgat cacggtgcct 660 aacggcggca tctgctctcc gattgtgacc tactcccgtg ggtccgatga gggtaaccgc 720 cataccaacg agactctgac gtacaagata gccttggact accattttgt gctgtcctcg 780 gctgcctgta agtatgccag tcgcgctgtt ggcgtggtct ggttggtcta tgatgcgcag 840 ccgaccggca atgccccgca agtgaaggac atcttccctc acggcgatgc gctgtccgcc 900 ttcccgtaca cttggaaggt tggtagggag gtctgccatc gcttcgtggt taagcggcgg 960 tggactttca cgatggagag caacggcaga atcggttcgg acacacctcc tgagaatgct 1020 gcttggacgc ccgtgaagcg ctccatctac ttccacaagt tctgcactgg actcggggtg 1080 aagacggagt ggaagaacgt gacagacggt ggtgtcggcg ccattaagaa gggcgccttg 1140 tatattgtaa ttgctccggg caatggcctc gacttcacgg ttcacggcca gtgccgtctg 1200 tactttaagt cagtcgggaa tcagtgattc ccataaattt aataaaaact tgtttttatt 1260 gcaagcccag catttaaaat gcgtacatta cattacatag tcggcagatt tgccgacgaa 1320 aaacacacac atagtgcagc ctcgggctaa agaccgagtc tcaaacgacc ccaaattaaa 1380 aaaaatcaga agaagcaaga tatatattaa attgcagccg ccggcttagg agggggtgta 1440 ccacttttcc ccctcctgca ttacgtagat ctcgcagttt tcgtagaagt actcatactg 1500 cgccggagtc atgtccttca tccaatcctc atccttgttg gcgaggatga ttgtggggat 1560 gctcttcttg gctactttgc ggcgtttccc gtacttcggg ttgacgatgt agtctttttg 1620 acagccgacg agctgcttcc agcacggaca gaacttgaag ggaatgtcgt cgacgacatt 1680 gtagagagct tcttcatcgt atgaagacca gtcgatattg ttctgccaat agttatgtcg 1740 tccgaggctt ctggcccatg atgttttacc tgtccgtgtt gggccgacga tgtagaggct 1800 tctctttctt gctcctggaa taatctagta gtttcagaga gccattgcaa gtcagcaatt 1860 gcctgttctc ggcttaagca gctaggttct aggagcatgt aggcctgagg actgacctgg 1920 tatatgttgg gctcaagcca gtcctggacg gtttcgttgc agaggaggtc aatgtctgtg 1980 gattcgtgag gattggtgta ggtctctgca atgtctggga agaggcgact agctgagtac 2040 tcaaagtatg acagttttgt ggcccagtca tagggcagtg cactctgcac cattgaaagg 2100 tactcctctc tagatgttgc gtgcgtcatg atctctttca tgatctcatc cttgctaggc 2160 ttcttctcag agggttcttt acctggcggg gagaaggact tcttcctggg tatgtatgta 2220 cctttctccc acttgtcctt cggatccttc aggatgtaag ctcgcacctt gtcggtgctc 2280 ttggcgctct gaatgttggg gtggtatcga tctatgtcga agtagcgctc gtcgctcgtg 2340 cttactggct tggtggtctg aaggagagca tggcagtgcc atgtcccatc tatgtgtgtc 2400 tctctgacta ctaggatgta ggctgggtca tagtccttgg tgagtctgaa cagatgctca 2460 ccgatgaact ctggttctag tggacacttg ctgtatgtga ggaaggtgtt cacgttccga 2520 tgccgaaagg atcggacggt gtgccttcca gtctgggagg atccgacggt agtttccatt 2580 tgcgcagagg tgatggcaga ctcagactct cccaaactct atccctagac agctgcgaaa 2640 taatccgcca ccagccgagt gtcttttata gccggatagg tgggctgggc cggccggccc 2700 atggagtgtg agcagca 2717 //