ID GQ415398; SV 1; circular; genomic DNA; STD; VRL; 2708 BP. XX AC GQ415398; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate H_NG_Jic15_BL, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2708 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2708 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; 984bcb37c7c56cfdce6951cf5736ef88. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2708 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="H_NG_Jic15_BL" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="1997" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW38" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW38" FT /protein_id="ADA67972.1" FT /translation="MEASSQYSSLPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLVKAQRGRSTEELIFGPGERPPVAPADGSRPLPDPSPSCPPGPR FT PFVA" FT CDS 489..1232 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW39" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW39" FT /protein_id="ADA67973.1" FT /translation="MSGALKRKRSDEVAWSRRKPAKKPARQPPPRAGPSVRRGLPALQI FT QTLVAAGETMITVPSGGICSLLGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKY FT SSIGVGVCWLVYDAQPSGNAPAVKDIFPHGDTLSAFPYTWKVGREVCHRFVVKRRWTFT FT METDGRIGSDVPPPDASWPPCKRSIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYII FT LAPGNGLEFTVNGQARLYFKSVGNQ" FT CDS complement(1598..2572) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW40" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW40" FT /protein_id="ADA67974.1" FT /translation="MSTSLSVTSDGRHSVRCFRHRNANTFLTYSKCPLEPEFIGEHLFR FT LTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDK FT VRDYILKDPKDKWEKGTYIPRKKCFVPPGKEPAEKKPSKDEVMKEIMTHATSREEYLSL FT VQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPASDPDLLCNETLQDWLEPNIYQV FT SPKAYMLLEPSCLSLEQAKADLDWLAETTRLLQEQERQASTSSAQHGQEKHPGPEASDA FT TTTGKTMSTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAAKQTT" XX SQ Sequence 2708 BP; 527 A; 724 C; 737 G; 720 T; 0 other; taatattacc gctcacaccc catgcgagcc acggctctgt gtggcgagcg gtcctactct 60 gctttgcctc cggtgcgatt tctttagctg cgagttcttt agcagctgcc cccactgtcc 120 tataagatgt cctccggagt gcgatctgct catggaggct agcagccagt actcgtcctt 180 gccctaccct cagccgccac gggtaccctc agcagctcct tccgccggag gcctgccgtg 240 gagtcgcgtc ggtgagatag ctatctttac ctttgttgca gttctagctc tttacctgct 300 ttggctttgg gtcctcagag atcttatctt gcttgttaag gctcagcgag gtcgatccac 360 cgaggagctg atctttggtc ctggtgagag gccccccgtc gctcctgccg acggttctcg 420 tcctctcccg gatccgtcgc cctcctgtcc gccgggtcct aggccttttg tggcctagag 480 ctttcagcat gtccggagct ttgaagcgca agcgttcgga tgaggttgcc tggagtcgaa 540 ggaagccagc caagaagcca gcccgtcagc ccccaccccg ggctggcccg tccgtcagga 600 gaggactccc tgcccttcag atacagacct tggtggctgc cggtgagact atgatcactg 660 tgccgtcagg tggcatctgt agtctgcttg gcacctatgc ccgcgggtct gatgaaggaa 720 accgccacac caacgagact ctaacgtaca aggttgcgtt agactaccac ttcgttgcca 780 ccgctgctgc ttgtaaatac agcagtattg gtgttggagt gtgctggttg gtgtacgatg 840 cgcagccttc cggcaatgcc ccggccgtga aggacatctt cccgcatgga gacacgctct 900 ccgccttccc ctacacttgg aaggttggga gggaggtctg ccatcgcttc gtggtcaaga 960 gacgctggac gttcaccatg gagaccgacg gtcgcattgg gtcggatgtc cctccgcctg 1020 atgcttcttg gccgccatgc aagcgctcta tctacttcca caagttctgc accgggctcg 1080 gggtgaagac ggagtggaag aacgtcacag acgggaaggt cggcgccatc aagaagggcg 1140 ccttgtatat tattcttgcc ccgggcaacg gccttgagtt tacggttaac ggccaagccc 1200 gtttgtattt taagtctgtt gggaatcagt gattcccact tcaattaata aaacttgttt 1260 tattcaaact gaacgaagtt catacaatac atagtcggca gatttgccga cgacaaacac 1320 acacatagtg cagcctcggg ctaaagaccg agtctcaaac gacccaactt aaacacaaat 1380 caaaaaaaca tgattttatt aaaactgcag ccgctggctt atgccggagt gtaccacttc 1440 tctccggcct gcattacgta gatttcgcag ttggcgtaga agtagtcata ctgcgccggc 1500 gtcatttcct tcagccagtc ctcatcctcg ttggcgagga tgattgttgg aatgctcttc 1560 tttgctacct tccggcgttt cccgtacttg ggattgacta tgtagtctgt ttggcagccg 1620 acgagctgct tccagcacgg acagaacttg aagggaatgt cgtcaacgac attgtagaga 1680 gcttcttcat catatgaaga ccagtcgaca ttgttttgcc agtagttgtg gcgtccgagg 1740 cttctggccc aggatgtttt tcctgtccgt gttgggccga cgatgtagag gcttgtcttt 1800 cttgctcctg gagtaatctg gttgtttcag ccaaccagtc taagtcagct tttgcttgct 1860 ctaggcttaa gcagctaggt tctaggagca tgtatgcttt aggactgacc tggtagatgt 1920 ttggctcaag ccagtcctgg agtgtttcgt tgcagaggag gtctgggtct gaggcaggat 1980 gtggactggt gaaggtttct gcaatgtccg ggaagaggcg actagctgag tactcaaagt 2040 aggacagttt tgttgcccag tcatacggca ggctgctctg aaccagagaa aggtactctt 2100 ccctgctagt agcatgagtc atgatttctt tcatgacttc atccttgcta ggcttcttct 2160 cagctggttc cttacctgga gggacgaagc acttcttcct tgggatgtat gtacctttct 2220 cccacttgtc cttggggtcc ttcagtatgt agtcacgcac cttgtcggtg ctcttggcgc 2280 tctgtatgtt gggatggtac cgatcgatgt caaagtacct ctcatcccta gttgtgactg 2340 gcttgatgca ttgcaggaga gcatggcagt gccatgtccc atcctggtgt gtctctctga 2400 ctaccagtat gtaggctggt tcaaagtcct tagtgagcct gaagagatgc tcaccgatga 2460 actctggttc tagtggacac ttgctgtagg tcaggaaggt gtttgcgttc cggtgcctga 2520 agcagcggac gctgtgccta ccgtcagaag tgacagagag acttgtcgac atagcgctag 2580 aggtgggcaa tctcaggctc ctcctcaact ctatccctag acagctgcga aataatctgc 2640 ccaccccgcg tgccctttta tagttgtttg gtgggctggg ccggccggcc catggggtgt 2700 gagcagca 2708 //