ID GQ415397; SV 1; circular; genomic DNA; STD; VRL; 2710 BP. XX AC GQ415397; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate H_CF_Bai2_Car11, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2710 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2710 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; f8389bf30c3cf60c2bbefac4ce9075dc. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2710 FT /organism="Panicum streak virus" FT /host="Brachiaria deflexa" FT /isolate="H_CF_Bai2_Car11" FT /mol_type="genomic DNA" FT /country="Central African Republic" FT /lat_lon="3.85 N 17.99 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW35" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW35" FT /protein_id="ADA67969.1" FT /translation="MEATSQYSSLPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLVKAQRGRSTEELIFGPGERPPVAPADGPRPLPDPSPSCPPGPR FT PFVA" FT CDS 489..1235 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW36" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW36" FT /protein_id="ADA67970.1" FT /translation="MSGALKRKRSDEVAWSRRKPAKKPARQPPPPRAGPSVRRGLPALQ FT IQTLVAAGETMITVPSGGICSLLGTYSRGSDEGNRHTNETLTYKVALDYHFVATAAACK FT YSSIGVGVCWLVYDAQPSGNAPAVKDIFPHGDTLSAFPYTWKVGREVCHRFVVKRRWTF FT TMETDGRIGSDVPPPDASWPPCKRSIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYI FT ILAPGNGLEFTVHGQARLYFKSVGNQ" FT CDS complement(1600..2574) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW37" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW37" FT /protein_id="ADA67971.1" FT /translation="MSTSLSVTSDGRHSVRCFRHRNANTFLTYSRCPLEPEFIGEHLFR FT LTRDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDK FT VRDYILKDPKDKWEKGTYIPRKKSFVPPGKEPAEKKPSKDEVMKEIMTHATSREEYLSL FT VQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPASDPDLLCNETLQDWLEPNIYQV FT SPKAYMLLEPSCLSLEQAKADLHWLAETTRVLQEQEREASTSSAQHGQEKHPGPEASDA FT TTTGRTISTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAAKQTT" XX SQ Sequence 2710 BP; 518 A; 743 C; 736 G; 713 T; 0 other; taatattacc gctcacaccc catgcgagcc acggccctgt gtggcgagcg gtcctacact 60 gctttgtctc cggtgcgatt tctttagctg cgagttcttt agcagctgcc cccactgtcc 120 tataagatgc tccccggagt gcgatctgct catggaggct accagccagt actcgtcctt 180 gccctatcct cagccgccac gggtaccctc agcagctcct tccgccggag gcctgccgtg 240 gagtcgcgtc ggtgagatag ctatctttac ctttgttgct gtcctagctc tttacctgct 300 ttggctttgg gtcctcagag atcttatctt gcttgttaag gctcagcgag gtcgatccac 360 cgaggagctg atctttggtc ctggtgagag gccccccgtc gctcctgccg acggtcctcg 420 tcctctcccg gatccgtcgc cgtcctgtcc gccgggtcct aggccttttg tggcctagag 480 ctctcagcat gtccggagct ttgaagcgca agcgttcgga tgaggttgcc tggagtcgaa 540 ggaagccagc caagaagcca gcccgtcagc cccccccccc gcgggctggc ccgtccgtca 600 ggaggggact ccctgccctt cagatacaga ccttggtggc tgccggtgag actatgatca 660 cagtgccgtc cggcggcatc tgcagtctgc ttggcaccta ctcccgtggg tctgatgaag 720 gaaaccgcca caccaacgag actctaacgt acaaggttgc gttagactac cacttcgttg 780 ccaccgctgc tgcctgtaaa tacagcagta ttggtgttgg agtgtgctgg ttggtgtacg 840 atgcgcagcc ttccggcaat gccccggccg tgaaggacat cttcccgcat ggagacacgc 900 tctccgcctt cccctacact tggaaagttg ggcgggaggt ctgccatcgc ttcgtggtca 960 agagacgctg gacgttcacc atggagaccg acggtcgtat tgggtcggat gtccctccgc 1020 ctgatgcttc ttggccgccc tgcaagcgct ccatctactt ccacaagttc tgcaccgggc 1080 tcggggtgaa gacggagtgg aagaacgtca cagacgggaa ggtcggcgcc attaagaagg 1140 gcgccttgta cattattctt gccccgggca acggccttga gtttacggtt cacggccaag 1200 cccgattgta cttcaagtct gttgggaatc agtgattccc acttcaatta ataaaacttg 1260 ttttattcaa ctgaacgaag ttcatacatt acatagtcgg cagatttgcc gacgacaaac 1320 acacacatag tgcagcctcg ggctaaagac cgagtctcaa acgacccaac ttaaacacaa 1380 atcaaaaaaa catgatttta ttaaaactgc agccgctggc ttatgccgga gtgtaccact 1440 tctctccggc ttgcattacg tagatttcgc agttggcgta gaagtagtca tactgcgccg 1500 gcgtcatgtc cttcatccag tcctcatcct cgttggcgag gatgattgtt ggaatgctct 1560 tctttgccac cttccggcgc ttcccgtact tgggattgac tatgtagtct gtttggcagc 1620 cgacgagctg cttccagcac ggacagaact tgaagggaat gtcgtcaacg acattgtaga 1680 gagcttcttc atcatatgaa gaccagtcga tattgttctg ccagtagttg tggcgtccga 1740 ggcttctggc ccaggatgtt tttcctgtcc gtgttgggcc gacgatgtag aggcttctct 1800 ttcttgctcc tggagtactc tggttgtttc agccaaccag tgtaagtcag cttttgcttg 1860 ctctaggctt aagcagctag gttctaggag catgtatgct ttaggactga cctggtatat 1920 gtttggctca agccagtcct ggagtgtttc gttgcagagg aggtctgggt ctgatgctgg 1980 atgcgggctg gtgaaggttt ctgcaatgtc cgggaagagg cgactagctg agtactcaaa 2040 gtaggacagt tttgttgccc agtcatacgg caggctgctc tgaaccagag aaaggtactc 2100 ttccctgcta gtagcatgag tcatgatttc tttcatgacc tcatccttgc taggcttctt 2160 ctcagctggt tccttacctg gagggacgaa ggacttcttc cgtggtatgt atgtaccttt 2220 ctcccacttg tccttggggt ccttcagtat gtagtcacgc accttgtcag tgctcttggc 2280 gctctgtatg ttgggatggt accgatctat gtcaaagtac ctctcatccc tagttgtgac 2340 tggcttgatg cattgcagga gagcatggca gtgccatgtc ccgtcctggt gtgtctctct 2400 gactactagt atgtatgctg gttcgaagtc cctagtgagc ctgaagagat gctcaccgat 2460 gaactctggt tctagtggac atctgctgta ggtcaggaag gtgtttgcgt tccggtgcct 2520 gaagcagcgg acgctgtgcc taccgtcaga agtgacagag agactggtcg acatagcgct 2580 agaggtgggc aatctcaggc tccttctcaa ctctatccct agacagctgc gaaataatcc 2640 gcccaccccc cgtgcccttt tatagttgct tggtgggttg ggccggccgg cccatggggt 2700 gtgagcagca 2710 //