ID GQ415396; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC GQ415396; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate G_YT_Ben_g384, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2736 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2736 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; 25c7fbe5df613f8374685d9c6d2a95f6. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="G_YT_Ben_g384" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.85 S 45.19 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 153..479 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW23" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW23" FT /protein_id="ADA67966.1" FT /translation="MDAQSSYSSLPYPSAPRVPSAAPSAGGLPWSRVGEIVIFTFVSVL FT ALYLLWLWVLKDCILLLKAQRGRSTEELTFGPGESSAVVPADGSRPVADPSPSCPPGPR FT PFVV" FT CDS 490..1239 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW24" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW24" FT /protein_id="ADA67967.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPPRAGSSSKRTLPAL FT QIQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAAC FT KYSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWC FT FTMSTNGRIGSDVPPSNTAWPPCKKDLYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGLY FT IVIAPGNGLEFTVHGQCRLYFKSVGNQ" FT CDS complement(1630..2595) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW34" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW34" FT /protein_id="ADA67968.1" FT /translation="MSTEGSTSLNVTATGRHTIGSFRHRNVNTFLTYSKFPLEPEFIGE FT HLFRLTKDYEPAYILVVRETHLDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVRDYILKNPKDKWEKGTYIPRKKSFVPPGKDSSEKKPSKDEVMREIMTHATSKEE FT YLSLVQASLPYDWATKLSYFEYSASRLFPDIAESYTNPHPATELDLHCNETIRDWLEPN FT IYQVIPKAYMLLEPSCLSLEQAKADLEWLSETTRMLQEQENAASTSSAQHGPAKLPGPE FT ASGDTTTGRTISTGLHTMKKLSTMSLTTFPSSSARAGSSS" XX SQ Sequence 2736 BP; 548 A; 725 C; 765 G; 698 T; 0 other; taatattacc cgctcacacc ccatgcgagc cgcggctctg tgcggcgagc ggtccccgtt 60 ggtcctaccc cggtgtgatt tcttcggctg cgggaccttt tgcagctgcc cccactgtcc 120 tataagttgt gccctcggtg cgattccgca tcatggatgc tcaaagcagc tactcatctt 180 tgccctatcc gtctgccccg cgggtaccct ctgcagctcc gtccgccgga ggcttgccgt 240 ggagtcgcgt cggtgagata gtcatcttta cctttgtttc agtgttagcg ctttacttgc 300 tttggttgtg ggtgctcaaa gattgcatct tgcttctgaa ggctcagcga ggtagatcca 360 cggaggagct cacttttggt cctggtgaga gttcagccgt cgtccctgcc gacggttctc 420 gtcctgttgc agatccgtcg ccgtcctgtc caccgggacc taggcccttt gtggtctaga 480 gcactcagca tgtcgggggc gttgaagcgc aagcgttcgg atgaggttgc ctggagtcga 540 aggaagcccg tgaagaagcc tgcccggagg cccccaccac ctccccgggc tggctcgtcc 600 tccaagagga cactccctgc ccttcagata cagaccttag tggctgccgg tgacactatg 660 atcactgtgc cgtccggagg catctgcagt ctgattggca cgtatgcccg ggggtccggt 720 gagggtgaac gccacaccaa cgagactctg acgtacaagg ttgccctgga ctaccatttt 780 gtagctaccg ccgctgcgtg taaatacagc agcatcggga tcggagtgtg ctggttggtg 840 tacgatgccc agcctaccgg cactgccccg accgtccaag atatatttcc gcacccggac 900 actctgtccg ctttcccgta cacctggaag gtggggaggg aggtctgcca tcgcttcgtc 960 gttaagagga ggtggtgctt caccatgtcc accaatggca ggatcgggtc tgacgtccct 1020 ccttccaaca cagcttggcc cccctgtaag aaggacttgt acttccacaa gttctgcacg 1080 ggattgggag tgaagacgga gtggaagaac gtcacagacg ggaaggacgg cgccattaag 1140 aagggcggct tgtacatagt cattgcaccg ggcaatggcc tcgagttcac ggttcacggc 1200 cagtgccgtc tgtacttcaa gtcagttggg aatcagtgat tcccacacaa atataataaa 1260 aataatttta ttcattcaga acggaggtct tacattacat agtcggcaga ttagccgacg 1320 aaaaaacaca cacatagtgc agcctcgggc taaagaccga gtctcaaacg accccaaatt 1380 aaaacaaatc agaacaagca tgatattatt aaaactgcag ccgccggctt cattctgtct 1440 ggaagaattt ctctccagac agcagtgtgt actggtcgca gttcgcctcg aagtagctct 1500 gctgcgccgg agtcatgtcc ctcagccagt cctcatcttc gttggcgagg atgattgtgg 1560 ggatgctctt ccgggccacc ttccgtcgct tcccgtactt gggattgact atgtagtcgg 1620 tttgacagcc tacgagctgc ttccagcacg ggcagaactt gaagggaatg tcgtcaacga 1680 cattgtagag agcttcttca tcgtatgaag accagtcgat attgttctgc cagtagttgt 1740 gtctcccgag gcttcgggcc caggtagttt tgccggtccg tgttgggccg acgatgtaga 1800 ggctgcgttt tcttgttcct ggagcattct ggttgtttca gacaaccatt ctaagtcagc 1860 cttggcctgt tctaggctta agcagctagg ttctaagagc atgtatgctt tgggaatgac 1920 ctggtatatg ttcggctcca gccagtcccg gatagtctca ttgcagtgga ggtcgagttc 1980 ggttgcagga tgaggattgg tgtaggactc tgcaatgtct gggaagaggc gactagctga 2040 gtactcaaag taagacagtt tcgttgccca gtcgtaaggc agcgatgcct ggaccagaga 2100 aaggtactct tccttgctgg tggcatgtgt catgatctct ctcatgacct catccttgct 2160 aggcttcttc tcagaggagt ccttacctgg agggacgaag ctcttcttcc ttgggatata 2220 tgtgcctttc tcccacttgt ccttggggtt cttcagtatg tagtcacgca ccttgtcagt 2280 gctcttggcg ctctgtatat tgggatggta ccgatcgatg tcaaagtacc tctcgtcacg 2340 agtagtgacg ggtttgatgc actggagcag agcatggcag tgccatgtcc cgtctaagtg 2400 tgtctctcgg actaccaaga tgtatgctgg ttcgtagtcc ttagtgagcc tgaagagatg 2460 ctcaccgatg aactctggtt ctagaggaaa cttgctgtat gtgaggaagg tgttaacgtt 2520 ccggtgccta aagctcccga tcgtgtgcct gccagtggct gtgacattga gggaggttga 2580 tccttcggtc gacattagcg ctagaggtgg gcagattctc aggctgctct caactctact 2640 cctagacacc gctgcgaaat aatccgccca ccccccgtgg cttttatagt tgattaagtg 2700 ggctgggccg accggcccat ggggtgtgag cagcga 2736 //