ID GQ415395; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC GQ415395; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate G_YT_Coc_g385, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2736 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2736 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; e72a71c31f0a1e49d70ac508f6c7bfc2. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="G_YT_Coc_g385" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.83 S 45.14 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 153..479 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW29" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW29" FT /protein_id="ADA67963.1" FT /translation="MDAQSSYSSFPYPSAPRVPSAAPSAGGLPWSRVGEIVIFTFVSML FT ALYLLWLWVLKDCILLLKAQRGRSTEELTFGPGESSAVVPADGSRPVADPSPSCPPGPR FT PFVV" FT CDS 490..1239 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW30" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW30" FT /protein_id="ADA67964.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPARAGSSSKRTLPAL FT QIQTLVAAGDTMITVPSGGICSLIGTYGRGSGEGERHTNETLTYKVALDYHFVATAAAC FT KYSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWC FT FTMSTNGRIGSDVPPSNTAWPPCKKDLYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGLY FT IVIAPGNGLEFTVHGQCRLYFKSVGNQ" FT CDS complement(1630..2595) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW31" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW31" FT /protein_id="ADA67965.1" FT /translation="MSTEGSTSLNVTATGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE FT HLFRLSKDYEPAYILVVRETHLDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVRDYILKNPKDKWEKGTYIPRKKSFVPPGKDSSEKKPSKDEVMREIMTHATSKEE FT YLSLVQASLPYDWATKLSYFEYSASRLFPDIAESYTNPHPATELDLHCNETIRDWLEPN FT IYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRMFQEQENAASTSSAQHGPAKLPGPE FT ASGDTTIGRTISTGLHMMKKLSTMSLTTFPSSSARAGSSS" XX SQ Sequence 2736 BP; 543 A; 727 C; 763 G; 703 T; 0 other; taatattacc cgctcacacc ccatgcgagc cgcggctctg tgcggcgagc ggtccccgtt 60 ggtcctaccc cggtgtgatt tcttcggctg cgagcccttt tgcagctgcc cccactgtcc 120 tataagttgt gccctcggtg cgattccgca tcatggatgc tcaaagcagc tactcatctt 180 ttccctatcc gtctgccccg cgggtaccct ctgcagctcc gtccgccgga ggcttgccgt 240 ggagtcgcgt cggtgagata gtcatcttta cctttgtttc aatgttagcg ctttacttgc 300 tttggctgtg ggtgctcaaa gattgcatct tgcttctgaa ggctcagcga ggtagatcca 360 cggaggagct cacctttggt cctggtgaga gttcagccgt cgtccctgcc gacggttctc 420 gtcctgttgc agatccgtcg ccgtcctgtc caccgggacc taggcccttt gtggtctaga 480 gcactcagca tgtcgggggc tttgaagcgc aagcgttcgg atgaggttgc ctggagtcga 540 aggaagcccg tgaagaagcc tgcccggagg cccccacctc ctgcccgggc tggctcgtcc 600 tccaagagga cactccctgc ccttcagata cagaccttag tggctgccgg tgacactatg 660 atcactgtgc cgtctggagg catctgcagt ctgattggca cgtatggccg ggggtccggt 720 gagggtgaac gccacaccaa cgagactctg acgtacaagg ttgccctgga ctaccatttt 780 gtagctaccg ccgctgcgtg taaatacagc agcatcggga tcggagtgtg ctggttggtg 840 tacgatgccc agcctaccgg cactgccccg accgtccaag atatatttcc gcacccggac 900 actctgtccg ctttcccgta cacctggaag gtggggaggg aggtctgcca tcgcttcgtc 960 gttaagagga ggtggtgctt caccatgtcc accaatggca ggatcgggtc tgacgtccct 1020 ccttccaaca cagcttggcc cccctgtaag aaggacctgt acttccacaa gttctgcacg 1080 ggattgggag tgaagacgga gtggaagaac gtcacagacg ggaaggacgg cgccattaag 1140 aagggcggct tgtacatagt cattgcaccg ggcaatggcc tcgagttcac ggttcacggc 1200 cagtgccgtc tgtatttcaa gtcagtcggg aatcagtgat tcccacacaa atataataaa 1260 aataatttta ttcattcaga acggagttct tacattacat agtcggcaga ttagccgacg 1320 aaaaaacaca cacatagtgc agcctcgggc taaagaccga gtctcaaacg accccaaatt 1380 aaaacaaatc agaacaagca tgatattatt aaaactgcag ccgccggctt cattctgtcc 1440 ggaagaattt ctctccggac agcagtgtgt actggtcgca gttcgcctcg aagtagctct 1500 gctgcgccgg agtcatgtcc ctcagccagt cctcatcttc gttggcgagg atgattgtgg 1560 gtatgctctt ccgggccacc ttccgccgct tcccgtattt gggattgact atgtagtcgg 1620 tttgacagcc tacgagctgc ttccagcacg ggcagaactt gaagggaatg tcgtcaacga 1680 cattgtagag agcttcttca tcatatgaag accagtcgat attgttctgc caatagttgt 1740 gtctcccgag gcttcgggcc caggtagttt tgccggtccg tgttgggccg acgatgtaga 1800 ggctgcgttt tcttgttcct ggaacattct ggttgtttca gacaaccatt ctaagtcagc 1860 cttggcctgt tctaggctta agcagctagg ttctaagagc atgtatgctt tgggactgac 1920 ctggtatatg ttcggctcca gccagtcccg gatagtctca ttgcagtgga ggtcgagttc 1980 ggttgcagga tgaggattgg tgtaggactc tgcaatgtct gggaagaggc gactagctga 2040 gtattcgaag taagacagtt tcgttgccca gtcgtaaggc agcgatgcct ggaccagaga 2100 aaggtactct tccttgctgg tggcatgtgt catgatctct ctcatgacct catccttgct 2160 aggcttcttc tcagaggagt ccttacctgg agggacgaag ctcttcttcc ttgggatgta 2220 tgtgcctttc tcccacttgt ccttggggtt cttcagtatg tagtcacgca ccttgtcagt 2280 gctcttggcg ctctgtatat tgggatggta ccgatcgatg tcaaagtacc tctcgtcacg 2340 agtagtgacg ggtttgatgc actggagcag agcatggcag tgccatgtcc cgtctaagtg 2400 tgtctctcgg actactagga tgtatgctgg ttcgtagtct ttactgagcc tgaagagatg 2460 ctcaccgatg aactctggtt ctagaggaca cttgctgtat gtgaggaagg tgttaacgtt 2520 ccggtgccta aagctccgga tcgtgtgcct gccagtggct gtgacattga gggaggttga 2580 tccttcggtc gacattagcg ctagaggtgg gcagattctc aggctgctct caactctact 2640 cctagacacc gctgcgaaat aatccgccca ccccccgtgg cttttatagt tgcttaagtg 2700 ggctgggccg gccggcccat ggggtgtgag cagcga 2736 //