ID GQ415390; SV 1; circular; genomic DNA; STD; VRL; 2724 BP. XX AC GQ415390; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate E_KE_Nye5_g359, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2724 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2724 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; a00e63b16f8b7faf7842a22d0d12cd01. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2724 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="E_KE_Nye5_g359" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.42 S 36.95 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW14" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW14" FT /protein_id="ADA67948.1" FT /translation="MDASSQYSALPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVSVL FT ALYLLWLWVLRDLILLLKAQRGVSTEELIFGPGERPAVAAADGSRPVSDPSPSCPPGPR FT PFVV" FT CDS 489..1235 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW12" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW12" FT /protein_id="ADA67949.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPRAAPSVRRGLPSLQ FT IQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAACK FT YSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPATLSAFPYTWKVGREVCHRFVVKRRWCF FT TMETNGRIGSDTPPSNVAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGFYI FT VIAPGNGLEFTCHGQCRLYFKSVGNQ" FT CDS complement(1602..2588) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW16" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW16" FT /protein_id="ADA67950.1" FT /translation="MSTEGSTSLTVTPTGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE FT HLFRLTKDYEPAYILVVRETHTDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVRDYILKDPKDKWEKGTYIPRKKSFSPPGKDSSEKKPSKDEVMREIMTHATSREE FT YLSLVQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPTSDPDLLCNETLQDWLEPN FT IYQVSPKAYMLLEPSCLSLEQAKADLDWLAETTRLLREQERQASTSSAQHGQVKHPGLE FT ASDDTTTGRTMSTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAVKRTT" XX SQ Sequence 2724 BP; 544 A; 732 C; 735 G; 713 T; 0 other; taatattacc gctcacaccc catgcgagcc gcggctctgt gcggcgagcg gtcctcggat 60 gttctacccc cggtgcgatt tctttagctg cgtgttcttt agcagctgcc cccactgtcc 120 tataagatgc tccctcggtg cgatccgcat catggatgct agcagccagt actctgcttt 180 gccgtatcct cagccacccc gggtaccctc tgcagctccg tccgccggag gtctgccgtg 240 gagtcgcgtc ggtgagatag ctatcttcac ctttgtttca gtgctagctc tttacttgct 300 ttggctttgg gtcctcagag atcttatctt gcttctgaag gctcagcgag gtgtatccac 360 ggaggagctg atctttggtc ctggtgagag gccagccgtc gccgctgccg acggttctcg 420 tcctgtttcg gatccgtcgc cgtcctgtcc accgggacct agacctttcg tggtctagag 480 cactcatcat gtctggtgct ttgaagcgca agcgttccga cgaggttgcc tggagtcgaa 540 ggaagcccgt gaagaagcct gcccgccggc ccccaccgcc gcgggctgct ccctctgtca 600 ggaggggtct cccttccctg cagattcaga ctttagtggc tgccggtgac actatgatca 660 ctgtgccgtc cggaggcatc tgcagtctga ttggcacgta tgcccggggc tccggtgagg 720 gtgaacgcca caccaacgag actctgacgt acaaggtcgc tctggactac cacttcgttg 780 ccaccgctgc tgcgtgtaaa tacagcagta ttggcattgg agtttgctgg ttggtgtacg 840 atgcgcagcc taccggcact gccccgaccg tccaagacat ttttccacac ccggctactc 900 tctcagcatt tccctacacc tggaaggtgg ggagggaggt ctgccatcgc ttcgttgtta 960 aacggcgctg gtgctttacc atggagacta acggccggat cggttcggat acccccccgt 1020 ccaacgtggc ttggccaccc tgcaagaagg acatctactt ccacaagttc tgcacgggct 1080 tgggcgtgaa gacggagtgg aagaacgtta cagacgggaa ggacggcgcc atcaagaagg 1140 gcggcttcta catagtcatt gcgcccggca acggcctcga gttcacgtgt cacggccagt 1200 gccgtctgta ctttaagtca gttgggaatc agtgattccc acataatttt aataaaacaa 1260 gttttattca ttcagaacga agttcgtaca ttacatagtc tgcagatttg cagacgaaaa 1320 cacacacata gtgcagcctc gggctaaaga ccgagtctca aacgacccaa cttaaaaaca 1380 aatcaaaaca aacatgatat tattaaacct gcagccgccg gcttaagcag gagtgtacca 1440 cttctctcct gcttgcatta cgtagatctc gcagtttgcg tagaagtact cgtactgggc 1500 cggtgtcagt tccttcagcc agtcctcatc ctcgttggcg aggattattg taggtatgcc 1560 cttcttggcg aacctgcgtc ttttcccgta cttgggattg actatgtagt ccgtttgaca 1620 gccgacgagc tgcttccagc acggacagaa cttgaaggga atgtcgtcaa tgacattgta 1680 gagagcttct tcatcatatg aagaccagtc gacattgttc tgccagtagt tgtgtcgtcc 1740 gaggcttcta gcccaggatg ttttacctgt ccgtgttggg ccgacgatgt agaggcttgt 1800 ctttcttgct cccggagtaa tctagttgtt tcagccagcc agtctaagtc agcttttgct 1860 tgctctaggc ttaagcagct aggttcgaga agcatgtatg ctttaggact gacctggtag 1920 atgttcggct caagccagtc ctggagagtt tcgttgcaga ggaggtctgg gtcagaagtc 1980 ggatgagggc tagtgaaggt ctctgcaatg tccgggaaga ggcgactagc tgagtactca 2040 aagtatgaca gtttagtagc ccagtcatac ggcaggctgc tctgaaccag agaaaggtac 2100 tcttctctgc tagtagcatg tgtcatgatc tctctcatga cttcatcctt gctaggcttc 2160 ttctcagaac tatccttacc tggtggactg aaggacttct tccttggaat gtatgtacct 2220 ttctcccact tgtccttggg gtccttcagt atgtagtcac gcaccttgtc agtgctcttg 2280 gcgctctgta tgttgggatg gtaccgatct atgtcaaagt acctctcgtc ccgagtagtg 2340 acaggcttga tgcactggag aagagcatgg cagtgccatg ttccgtctgt gtgtgtctct 2400 ctgactacta gtatgtaggc tggctcatag tccttagtga gcctgaagag atgctcaccg 2460 atgaactccg gttctagagg acacttgctg tatgtgagga aggtgttaac gttccggtgc 2520 ctaaagctcc ggatcgtgtg cctgcctgtg ggtgtcacag tgagggaggt tgatccttcg 2580 gtcgacatta gcgctagagg tgggcaatct caggctctcc tcaactctac ccctagacag 2640 ctgcgaaata atccgcccac cccccgtccc cttttatagt tgcttggtgg gctgggccgg 2700 caggcccatg gggtgtgagc agca 2724 //