ID GQ415389; SV 1; circular; genomic DNA; STD; VRL; 2725 BP. XX AC GQ415389; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate E_KE_Nye4_g363, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2725 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2725 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; 21d8e400710094966c7ab5a25f55adcb. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2725 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="E_KE_Nye4_g363" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.4 S 36.95 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW11" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW11" FT /protein_id="ADA67947.1" FT /translation="MDASSQYSALPYPQPPRVPSAAPSAGGLPWSRVGEIAIFTFVSVL FT ALYLLWLWVLRDLILLLKAQRGRSTEELIFGPGERPAVAAADGSRPVSDPSPSCPPGPR FT PFVV" FT CDS 489..1235 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW12" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW12" FT /protein_id="ADA67946.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKPARRPPPPRAAPSVRRGLPSLQ FT IQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVATAAACK FT YSSIGIGVCWLVYDAQPTGTAPTVQDIFPHPATLSAFPYTWKVGREVCHRFVVKRRWCF FT TMETNGRIGSDTPPSNVAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGFYI FT VIAPGNGLEFTCHGQCRLYFKSVGNQ" FT CDS complement(1602..2588) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW13" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW13" FT /protein_id="ADA67945.1" FT /translation="MSTEGSTSLTVTPTGRHTIRSFRHRNVNTFLTYSKCPLEPEFIGE FT HLFRLTKDYEPAYILVVRETHTDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVRDYILKDPKDKWEKGTYIPRKKSFSPPGKDSSEKKPSKDEVMREIMTHATSREE FT YLSLVQSSLPYDWATKLSYFEYSASRLFPDIAETFTSPHPTSDPDLLCNETLQDWLEPN FT IYQVSPKAYMLLEPSCLSLEQAKADLDWLAETTRLLQEQEREASTSSAQHGQVKHPGLE FT ASDDTTTGRTMSTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAVKRTT" XX SQ Sequence 2725 BP; 547 A; 724 C; 734 G; 720 T; 0 other; taatattacc gctcacaccc catgcgagcc gcggctctgt gcggcgagcg gtccccggat 60 gttttacccc cggtgcgatt tctttagctg cgtgttcttt agcagctgcc cacactgtcc 120 tataagatgc tccctcggtg cgatccgcat catggatgct agcagtcagt actctgcttt 180 accgtatcct cagccacccc gggtaccctc tgcagctccg tccgccggag gtctgccgtg 240 gagtcgcgtc ggtgagatag ctatctttac ctttgtttca gtgctagctc tttacttgct 300 ttggctttgg gtcctcagag atcttatctt gcttctgaag gctcagcgag gtagatccac 360 ggaggagctg atatttggtc ctggtgagag gccagccgtc gccgctgccg acggttctcg 420 tcctgtttcg gatccgtcgc cgtcctgtcc accgggccct agacctttcg tggtctagag 480 cactcatcat gtccggagct ttgaagcgca agcgttccga cgaggttgcc tggagtcgaa 540 ggaagcccgt gaagaagcct gcccgtcggc ccccgccgcc gcgggctgct ccctctgtca 600 ggaggggtct cccttccctg cagattcaga ccttggtggc tgccggtgac actatgatca 660 cagtgccgtc tggcggcatc tgcagtctga ttggcacgta tgcccggggc tccggtgagg 720 gtgaacgcca taccaacgag actctgacgt acaaggtcgc tctggactac cacttcgttg 780 ccaccgctgc tgcgtgtaaa tacagcagta ttgggattgg agtttgctgg ttggtgtacg 840 atgcgcagcc taccggcact gccccgaccg tccaagatat ttttccacac ccggccactc 900 tctcagcgtt cccctacacc tggaaggtgg ggagggaggt ctgccatcgc ttcgttgtta 960 aacggcgctg gtgctttacc atggagacta acggccgcat cggttcggat acacccccgt 1020 ccaacgtggc ttggccaccc tgcaagaagg acatctactt ccacaagttc tgcacgggct 1080 tgggcgtgaa gacggagtgg aagaacgtta cagacgggaa ggacggcgcc atcaagaagg 1140 gcggcttcta catagtcatt gcgcccggca acggcctcga gttcacgtgt cacggccagt 1200 gccgtctgta ctttaagtca gttgggaatc agtgattccc acttaatttt aataaaacaa 1260 gttttattca ttcagaacga agttcgtaca ttacatagtc tgcagatttg cagacgaaaa 1320 cacacacata gtgcagcctc gggctaaaga ccgagtctca aacgacccaa cttaaaaaca 1380 aatcaaaaca aacatgatat tattaaacct gcagccgccg gcttaagcag gagtgtacca 1440 cttctctcct gcttgcatta cgtagatctc gcagtttgcg tagaagtact cgtactgggc 1500 cggtgtcagt tccttcagcc agtcctcatc ctcgttggcg aggattattg tagggatgct 1560 cttcttggcg accttgcgtc tcttcccgta cttgggattg actatgtagt ccgtttgaca 1620 gccgacgagc tgcttccagc acggacagaa cttgaaggga atgtcgtcaa tgacattgta 1680 gagagcttct tcatcatatg aagaccagtc gacattgttc tgccagtagt tgtgtcgtcc 1740 gaggcttcta gcccaggatg ttttacctgt ccgtgttggg ccgacgatgt agaggcttct 1800 ctttcttgct cctggagtaa tctagttgtt tcagccagcc agtctaagtc agcttttgct 1860 tgctctaggc ttaagcagct aggttcaaga agcatgtatg ctttaggact gacctggtag 1920 atgtttggct caagccagtc ctggagagtt tcgttgcaga ggaggtctgg gtcagaagtt 1980 ggatgagggc tagtgaaggt ctctgcaatg tccgggaaga ggcgactagc tgagtactca 2040 aagtatgaca gtttagtagc ccagtcatac ggcaggctgc tctgaaccag agaaaggtac 2100 tcttctctgc tagtagcatg tgtcatgatc tctctcatga cttcatcctt gctaggcttc 2160 ttctcagaac tatccttacc tggtggactg aaggacttct tccttggaat gtatgtacct 2220 ttctcccact tgtccttggg gtccttcagt atgtagtcac gcaccttgtc agtgctcttg 2280 gcgctctgta tgttgggatg gtaccgatct atgtcaaagt acctctcgtc acgagtagtg 2340 acaggcttga tgcactggag aagagcatgg cagtgccatg ttccgtctgt gtgtgtctct 2400 ctgacaacta gtatgtaggc tggctcatag tccttagtga gcctgaagag atgctcaccg 2460 atgaactccg gttctagtgg acatttgctg tatgtgagga aggtgttaac gttccggtgc 2520 ctaaagctcc ggatcgtgtg cctgcctgtg ggtgttacag tgagggaggt tgatccttcg 2580 gtcgacatta gcgctagcgg tgggcaatct caggctcctc ctcaactcta tccctagaca 2640 gctgcgaaat aatccgccca cccccagtct ccttttataa ttacttggtg ggctgggccg 2700 gccggcccat ggggtgtgag cagca 2725 //