ID GQ415388; SV 1; circular; genomic DNA; STD; VRL; 2707 BP. XX AC GQ415388; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate D_NG_Ola_g242, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2707 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2707 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; 1d5cf613c365beac744eb69f6ccca03d. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2707 FT /organism="Panicum streak virus" FT /host="Urochloa maxima" FT /isolate="D_NG_Ola_g242" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /lat_lon="7.41 N 3.86 E" FT /collection_date="2007" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B0Z3W6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B0Z3W6" FT /protein_id="ADA67942.1" FT /translation="MEASSQYSSLPYPQPPRVPAAAPSAGGLPWSRVGEIAIFTFVAVL FT ALYLLWLWVLRDLILLVKAQRGRSTEELIFGPGERPAVAPADGSRPVPDPSPSCPPGPR FT PFVA" FT CDS 489..1232 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B0Z3W7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B0Z3W7" FT /protein_id="ADA67943.1" FT /translation="MSGALKRKRSDEVAWSRRKPAKKPARQPPPRAGPSVRRGLPALQI FT QTLVAAGDTMITVPSGGICSLLGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKY FT SSIGVGVCWLVYDAQPSGNAPEVKDIFPHGDTLSAFPYTWKVGREVCHRFVVKRRWTFT FT METDGRIGSDVPPANASWPPCKRSIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIV FT LAPGNGLEFTVHGQARLYFKSVGNQ" FT CDS complement(1600..2571) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW10" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW10" FT /protein_id="ADA67944.1" FT /translation="MSTVGSSSESRHSVRCFRHRNANTFLTYSKCPLEPEFIGEHLFRL FT TRDFEPAYILVVRETHTDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDKV FT RDYILKDPKDKWEKGTYIPRKKSFVPPGKENSGKKPSKDEVMREIMTHATSKEEYLSLV FT QTSLPYDWATKLSYFEYSASRLFPDIAESYTNPHPATELDLHCNETIRDWLEPNIYQVS FT PKAYMLLEPSCLSLEQAKADLEWLSETTRMLQEQENAASTSSAQHGQVKPPGPEASEDT FT TTGKTILTGLHMMKKLSTMSLTTFPSSSVRAGSSSSAAKQTT" XX SQ Sequence 2707 BP; 530 A; 717 C; 735 G; 725 T; 0 other; taatattacc gctcacaccc catgcgagcc acggccctgt gtggcgagcg gtcctacact 60 gctttgtctc cggtgcgatt tctttagctg cgccgtcttt agcagctgcc cccactgtcc 120 tataagatgc tctccggagt gcgatgcgct catggaggct agcagccagt actcgtcctt 180 gccctatcct cagccgccac gggtacccgc cgcagctcct tccgccggag gcctgccgtg 240 gagtcgcgtc ggtgagatag ctatctttac ctttgttgca gtcctagctc tttacttgct 300 ttggctttgg gtgctcagag atcttatctt gcttgttaag gctcagcgag gacgatccac 360 ggaggagctg atctttggtc ctggtgagag gccagccgtc gcccctgccg acggttctcg 420 tcctgttccg gatccgtctc cgtcctgtcc gccgggtcct aggccttttg tggcctagag 480 ctctcagcat gtccggagct ttgaagcgca agcgttctga tgaggttgcc tggagtcgaa 540 ggaagccagc caagaagcca gcccgtcagc ccccaccccg ggctggcccg tccgtcagga 600 ggggactccc tgccctccag attcagacct tggtggctgc cggtgatact atgatcactg 660 tgccgtcagg cggcatctgc agtctgcttg gcacctatgc ccgcggatct gatgaaggaa 720 accgtcacac caacgagact ctaacgtaca aggttgcgtt agactaccac tttgttgcca 780 ccgctgctgc gtgtaaatac agcagtattg gtgttggagt gtgctggttg gtgtacgatg 840 cgcagccttc cggcaatgcc ccggaggtga aggatatctt ccctcatgga gatacgcttt 900 ccgccttccc ctacacttgg aaggttggga gggaggtctg ccatcgcttc gtggtgaagc 960 gacgctggac gttcaccatg gagaccgacg gtcgcattgg gtcggatgtc cctccggcta 1020 atgcctcttg gccgccgtgc aagcgctcca tatacttcca caagttctgc actggactcg 1080 gagtgaagac ggagtggaag aacgttacag acgggaaggt cggcgccatt aagaagggcg 1140 ccttgtacat tgttcttgcc ccgggcaacg gccttgagtt tacggttcac ggccaagccc 1200 gtttgtactt caagtctgtt gggaatcagt gattcccact taatttaata aaacttgttt 1260 tattcatact gaacgaagtt catacattac atagtcggca gatttgccga cgaaaaacac 1320 acacatagtg cagcctcggg ctaaagaccg agtctcaaac gacccaactt aaaaacaaat 1380 caaaacaagc atgatattat taaaattgca gccgccggct tcactctgtc tggaagaact 1440 tctctccaga cagcaggatg tactggtcgc agtttgcctc gaagtagctc agctgcgccg 1500 gagtcatgtc cctcagccag tcctcatcct cgttggcgag gatgattgtt ggaatgctct 1560 tctttgctac cttccggcgt ttcccgtact tgggattgac tatgtagtct gtttggcagc 1620 cgacgagctg cttccagcac ggacagaact tgaagggaat gtcgtcaacg acattgtaga 1680 gagcttcttc atcatatgaa gaccagtcaa tattgttttg ccagtagttg tgtcttccga 1740 ggcttctggc ccaggtggtt ttacctgtcc gtgttgggcc gacgatgtag aggctgcgtt 1800 ttcttgttcc tggagcattc tggttgtttc agacaaccat tctaagtcag cttttgcttg 1860 ttctagactt aagcagctag gttctaagag catgtatgct ttgggactga cctggtagat 1920 gtttggctcc agccagtccc ggattgtctc attgcagtgg aggtcaagct ctgtggcagg 1980 atgaggattg gtgtaggact ctgcgatgtc tgggaagagg cgactagctg agtattcaaa 2040 gtaggacagt tttgttgccc agtcataggg cagtgaagtc tgcaccagag aaaggtactc 2100 ttccttgctg gtggcatgtg tcatgatctc tctcatgact tcatccttgc taggcttctt 2160 cccagagttt tccttacctg gaggcacgaa ggacttcttc cttggtatgt atgtaccttt 2220 ctcccacttg tccttggggt ccttcagtat gtagtcacgc accttgtcag tgctcttggc 2280 gctctgtatg ttgggatggt accgatctat gtcaaagtac ctctcatctc ttgttgtgac 2340 tggcttgatg cattgcagga gagcatggca gtgccatgtt ccatctgtgt gtgtctctct 2400 aactaccagt atgtaggctg gttcaaagtc cctagtgagc ctgaacagat gctcaccgat 2460 gaactctggt tctagtggac acttgctgta ggtcaggaag gtgtttgcgt tccggtgcct 2520 gaagcaacgg acgctgtgcc tgctctcaga gctggaacca acggtggaca tagcgctaga 2580 ggtgggcagt ctcaggctcc tcctcaactc tatccctaga cagctgcgaa ataatccgcc 2640 cacccccagt gcccttttat agttgtttgg tgggctgggc cggccggccc atggggtgtg 2700 agcagca 2707 //