Dbfetch
ID GQ415386; SV 1; circular; genomic DNA; STD; VRL; 2708 BP. XX AC GQ415386; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate A_ZA_Ill_g263, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2708 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2708 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; f644d421a7801ad446c4b1b10de6f2ef. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2708 FT /organism="Panicum streak virus" FT /host="Ehrharta calycina" FT /isolate="A_ZA_Ill_g263" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="26.77 S 26.83 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 153..476 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B0Z3V7" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B0Z3V7" FT /protein_id="ADA67936.1" FT /translation="MDASSTTPFPFPQPPRVPSAAPVAGGLPWSRVGEIVIFTFVSVLG FT LYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRP FT FVV" FT CDS 487..1230 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW03" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW03" FT /protein_id="ADA67937.1" FT /translation="MSGALKRKRSDEVAWSRRKPVKKQARVPPPRAGPSVRRGLPALQI FT QTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKY FT SSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFT FT METNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIV FT IAPGNGLEFTVHGQCRLYFKSVGNQ" FT CDS complement(1598..2572) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW04" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW04" FT /protein_id="ADA67938.1" FT /translation="MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFR FT LTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDK FT VREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSL FT VQTSLPYDWGTKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQV FT SPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEALDD FT TTTGRIISTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT" XX SQ Sequence 2708 BP; 560 A; 718 C; 726 G; 704 T; 0 other; taatattacc gctcacaccc catgcgagcc acggccctgt gtggcgagcg gtccccggat 60 gttcttaccc cggtgcgatt tctttagctg cgtcttcttt agcagctgcc cccactgtcc 120 tataagttgc ttccccggtg cgattccgca tcatggatgc tagcagcacc actccttttc 180 ctttccctca gccgcctcgg gtaccctctg cagctccggt cgccggaggc ctgccgtgga 240 gtcgcgtcgg tgagatagtc atctttactt ttgtttcagt gctaggcctt tacctgcttt 300 ggctttgggt gctcaaagat tgtatcttac ttctgaaggc tcagcgaggt agatccacgg 360 aggagctgat ctttggtcct ggtgagaggc cagccgtcgc ttctgccgac ggttctcgct 420 ccgttccaga tccgtctccg tcctgtccgc cgggacctag acctttcgtg gtctagagca 480 ctcagcatgt ccggagcttt gaagcgcaag cgttcggatg aggttgcctg gagtcgaagg 540 aagcccgtca agaagcaagc ccgggttccc cctccccggg ctggcccctc tgtcaggaga 600 ggactccctg cccttcagat ccagacgctt acggcggctg gtgacactat gatcacggtg 660 ccgtccggcg gcatctgcag tctgattggc acgtatgccc ggggctctga tgaaggtaac 720 cgccacacca acgagactct gacgtacaag gttgcgctgg attaccactt cgttgctact 780 gctgcggcct gcaagtactc cagcattgga gtgggtgtca tgtggttggt gtatgatgcg 840 cagccgaccg gcaattcacc ggaggtgaag gacatcttcc ctcactccga cacgctctca 900 gcgttcccct acacttggaa ggttggcagg gaggtctgcc atcgcttcgt tgttaaacgg 960 cgctggtgct tcaccatgga gactaacggc cggatcggtt cagacgttcc tccggccaat 1020 accgcttggc cgccttgcaa gaaggacatc tacttccaca agttctgcac gggactcggc 1080 gtgaagacgg agtggaagaa cgttacagac gggaaggtcg gcgctattaa gaagggcgcc 1140 ttgtacattg tcattgcgcc tggaaacggg cttgagttta cggttcacgg ccagtgccgt 1200 ctgtacttta agtcagttgg taatcagtga ttaccacatc aattaataaa acaagtttta 1260 ttcaaagagc gaagctcata cattacatag tcagcagata tgctgacaga aaacacacac 1320 atagtgcagc ctcgggctaa agaccgagtc tcaaacgacc caacttaaaa acaaatcaaa 1380 acaagcatga tattattaaa tatgcagccg ccggcttaag caggagtgaa ccacttctct 1440 cctgcctgca ttacgtagat ttcgcagttt gcgtagaagt agtcatactg cgccggagtc 1500 atgtccttca gccagtcctc atcctcgttg gcgaggatga tagttgggta tgctctttga 1560 ggccaccttc cgtctcttcc ccgtacttcg gggttcacta tgtagtcttt ttgacagccg 1620 acgagctgct tccagcacgg acagaacttg aagggaatgt cgtccacgac attgtacgca 1680 gcttcttcat cgtatgaaga ccagtcgata ttattctgcc agtagttgtg tcgtccaagg 1740 cttctggccc aggatgtttt acctgtccgt gttgggccga cgatgtagag gcttcgcttt 1800 cttgctcctg gaataatctg gttgtttcag acaaccattc taagtcagct ttggcttgct 1860 ctaggcttaa gcagctaggt tcaaggagca tgtatgcttt aggactgacc tggtagatgt 1920 taggctcaag ccagtcctgg agtgtttcgt tgcagaggag gtcagggtca gtggcaggat 1980 gaggattgct gtaaggctct gcaatgtccg ggaacaggcg actagctgag tactcaaagt 2040 atgacagttt tgtgccccag tcgtaaggca gtgaagtctg cactagtgaa aggtactctg 2100 ctctgctagt ggcatgtgtc atgatctcct tcatgacctc atccttagaa ggcttcttct 2160 cagaattttc cttacctgga ggaacgaagc tcttcttcct tggtatgtaa gtacctttct 2220 cccacttgtc cttgggatcc ttcagtatgt actcacgtac cttgtcagtg ctcttggcgc 2280 tctgtatatt cggatgatac cgatctatgt caaagtacct ctcgtcacga gtagtgacag 2340 gcttgatgca ctggagaaga gcatggcagt gccatgttcc gtcttggtga gtctctctca 2400 ctaccaggat gtatgctggc tcaaagtcct tagtgagcct gaagagatgc tcaccgatga 2460 actcaggttc tagtggacac ttgctgtatg tgaggaaggt gttcgcgttc cggtgcctga 2520 aggaccggac gctgtgcctg ccatcagagg tgatagacag agaggtcgac attagcgcag 2580 gaggttgggc aatctcaggc tctcctcagc tctatcccta gacagctgcg aaataatccg 2640 cccacccccc gtgcctttta tagctgcttg gtgggctggg ccggccggcc catggggtgt 2700 gagcagca 2708 //