ID GQ411367; SV 1; linear; genomic RNA; STD; VRL; 3130 BP. XX AC GQ411367; XX DT 09-SEP-2009 (Rel. 102, Created) DT 09-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Ligustrum necrotic ringspot virus replicase polyprotein gene, partial cds; DE and triple gene block protein 1, triple gene block protein 2, triple gene DE block protein 3, coat protein, and putative nucleotide binding protein DE genes, complete cds. XX KW . XX OS Ligustrum necrotic ringspot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3130 RA Harper S.J., Tang J., Clover G.R.G.; RT "New record of LNRsV in Impatiens in New Zealand"; RL Unpublished. XX RN [2] RP 1-3130 RA Harper S.J., Tang J., Clover G.R.G.; RT ; RL Submitted (23-JUL-2009) to the INSDC. RL IDC-PHEL, MAF Biosecurity NZ, 231 Morrin Road, Auckland 1010, New Zealand XX DR MD5; 169a3f0335f0e56bba898e51554665da. XX FH Key Location/Qualifiers FH FT source 1..3130 FT /organism="Ligustrum necrotic ringspot virus" FT /host="Impatiens sp." FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="17-Mar-2009" FT /db_xref="taxon:478550" FT CDS <1..629 FT /codon_start=3 FT /product="replicase polyprotein" FT /db_xref="GOA:C8CJM3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C8CJM3" FT /protein_id="ACV31388.1" FT /translation="DASQDQYIVAFEVNVMRFLGIPNDVINDYVFIKTHLGSKLGNFSI FT MRFSGEASTFLFNTMANMLFTFLRYSIKGNEYICFAGDDMCANTKLHVSKEHESFLSKL FT KLKAKVDNTNHPTFCGWNLSTHGIFKKPQLVFERLCIAKETNNLSNCIDNYAIEVSFAY FT KMGELAIQQMNEEEVEAFYNCVRVIIKYKHLLKSDVVNVFSNGLM" FT CDS 661..1344 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:C8CJM4" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C8CJM4" FT /protein_id="ACV31389.1" FT /translation="MDVLVSVLAKYKFERLSCSISPPIVVHSVPGAGKSSLIREIIQKD FT SRFQAYTYGEADPEHLSEFGIQKFSESLSGEFILLDEYLGGPVPDGVFAVFADPLQGGP FT GRPLRAHFIKKVSHRFGRATAQLLRDLNFEVEATNDDVVQVSGLYETDPRDTIIYCETE FT IGNLLKAHSVEAYCVSEIRGKTFESVTFVTSENSPRDRALAFQCLTRHRKSLLILCPDA FT SYSSC" FT CDS 1322..1642 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:C8CJM5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:C8CJM5" FT /protein_id="ACV31390.1" FT /translation="MPLTPPANYIQVYVSAAIGVSLALIVGLATRNTLPIVGDLQHNLP FT HGGRYRDGTKSVDYFKPCKLNSVEGGSSWVSQPWLLVILLVAAVILLSKKPNYCGTCGR FT VH" FT CDS 1624..1815 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C8CJM6" FT /protein_id="ACV31391.1" FT /translation="MRQGALNFCVVLLSFLGVYLLMTKTKTLCSIIISGESITVSGSEL FT TAEIVQAISQLRVQKLDL" FT CDS 1857..2762 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C8CJM7" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:C8CJM7" FT /protein_id="ACV31392.1" FT /translation="MPQKEAPSQTEVPPTTLPPPPVTPVTTPPPRERREERGEPSTVSG FT EEPQLELRFQRLIELLSGQRHNSNLKNMAFEIGVVSLEPTPEMKRNPANPYGRSSIDEL FT FRIKPKLVSNNMATTEQMAKIVSAIAGLGVPTEQVSAVILQTVIQCSSYSSSTFLDPDG FT SVEFEGGAVPLDAIVAIMKRDSTLRKVCRLYAPVVWNYMLVKDQPPSDWQAMGFQWNTR FT FAAFDFFDYVENQAAVQPVEGLIRRPTSAEKIAHATHRQLALDRSNRNEKFGSLEPEVT FT GGLQGTEIVRNHRNAANGNA" FT CDS 2623..3060 FT /codon_start=1 FT /product="putative nucleotide binding protein" FT /db_xref="GOA:C8CJM8" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:C8CJM8" FT /protein_id="ACV31393.1" FT /translation="MRRTGSLLWTDRTGMRNSGAWSPRSLADFKEPKLSAITGMPLMEM FT HERRRLAALFTVCNYLNKDIRALCPEIINRSPGLVLGSGKSSYARRRRAKSIGRCERCY FT RVYPPICNSKCDNTTCVPGISPNQDVVNYIKHGVTEVIPRF" XX SQ Sequence 3130 BP; 868 A; 695 C; 756 G; 811 T; 0 other; ttgatgcaag tcaagaccaa tatattgtgg cctttgaggt gaatgtgatg cgttttcttg 60 gcatcccgaa cgacgtgatc aatgattacg tatttatcaa aacgcactta ggctcgaaac 120 tggggaattt ctccatcatg aggttttcag gtgaagcgag taccttcctc ttcaacacaa 180 tggcaaacat gcttttcact tttctgaggt acagcattaa aggtaatgag tacatatgtt 240 ttgctggtga tgatatgtgc gcgaatacca agttgcatgt ttcaaaagag catgaaagct 300 ttctgagcaa attgaagctg aaagcaaaag tggacaacac caatcaccca acattctgcg 360 ggtggaacct cagtacacat ggcatcttca agaaaccaca gttagtgttt gagaggttgt 420 gcattgccaa agagactaat aatcttagta attgcataga taactacgcc attgaagttt 480 cctttgcata caagatgggt gagttggcaa tccaacaaat gaatgaggag gaggtggaag 540 ccttttacaa ctgcgtacgt gtgatcatca agtacaaaca tctcctcaag tcagacgtgg 600 ttaatgtctt ttcaaacggt ttgatgtaat agctttggta agcgctagtt tagattgtat 660 atggatgtgt tagtaagtgt gttagctaaa tataaatttg agcgtttaag ttgtagcatt 720 agccctccta ttgttgttca tagtgtccca ggcgcaggca agtcaagctt aatcagggaa 780 attattcaaa aagacagccg cttccaggca tatacatacg gcgaggctga tcctgagcat 840 ttgtcagagt tcggaattca gaagttcagc gaatctctgt cgggggagtt catcttgcta 900 gacgagtacc ttggcggccc ggtgcccgac ggtgtttttg cagtctttgc cgacccgttg 960 cagggtggcc ctggcaggcc acttagggcc catttcatta agaaggtctc tcacagattt 1020 ggcagagcaa ctgcacagct actccgcgat ttaaattttg aggtggaagc cacaaacgat 1080 gatgtcgtac aagtgagcgg gctttatgag acagacccca gagatactat catttattgt 1140 gaaacagaga tcgggaattt actcaaagcg catagtgtcg aagcctattg tgtcagcgaa 1200 atcagaggga aaactttcga gagtgtgacc ttcgtaacat cagagaactc tcctagagac 1260 agagctttgg ctttccagtg cttaactagg caccgcaaat ccctgctgat cctgtgccct 1320 gatgcctctt actcctcctg ctaattacat tcaggtgtat gtttccgcgg caattggggt 1380 ttcgcttgca ctcatcgtgg gtcttgccac gagaaataca ctccccattg tgggcgacct 1440 gcaacataac ctgccacacg gtggtagata ccgagacggt accaaatctg tggactattt 1500 caaaccttgc aagctcaatt ctgtcgaagg tggttcgtcc tgggtcagcc agccgtggtt 1560 gctggtcata cttttggtcg cagcggtcat tctactcagt aagaaaccca actattgcgg 1620 cacatgcggc agggtgcact gaacttttgt gttgtgctat tgagtttctt aggtgtgtat 1680 ctattgatga cgaaaacgaa aacgctttgc tcaatcataa tttcaggaga atcgatcacc 1740 gtttctgggt ccgaattgac cgcagagatt gtccaagcaa tatcacaatt gagggtgcag 1800 aagttggacc tttaggttta caggtagatg atcgttattc atacatactt atcaagatgc 1860 cccaaaagga agcaccctca caaacagagg taccaccaac tacactgcca ccgccacccg 1920 tgacaccggt caccacaccc ccgccacgcg aacgcaggga ggaaagaggc gaacctagca 1980 cagtttcagg tgaggagcca caactggaat tgaggttcca aagactgata gaactcttgt 2040 cagggcagag gcacaactcg aatttgaaga atatggcatt tgagataggc gttgtctcct 2100 tagaacccac tcctgagatg aagcggaatc ctgcgaaccc atacggccgt tcttctatcg 2160 atgaactgtt ccgtatcaag ccgaagcttg tctcaaataa tatggcaact acagaacaaa 2220 tggctaagat tgtgagtgca atcgcagggc taggtgtacc cacagaacaa gtctccgctg 2280 tcatcctaca aacggtgata caatgctcta gctacagtag ctccaccttt cttgatccag 2340 atgggagcgt tgaatttgaa gggggcgcag tgcccctcga cgccatcgta gcaattatga 2400 agcgtgactc cacgctgaga aaggtttgca ggttgtacgc tccagtggtt tggaactata 2460 tgctggtgaa agaccaacct ccatcagact ggcaagctat gggattccaa tggaacacac 2520 gattcgccgc tttcgacttc tttgactatg tcgaaaatca ggctgcagta caacccgttg 2580 aggggttaat aaggaggccg acttccgctg agaagattgc acatgcgacg cacaggcagc 2640 ttgctctgga cagatcgaac cggaatgaga aattcgggag cttggagccc gaggtcactg 2700 gcggacttca aggaaccgaa attgtccgca atcacaggaa tgccgctaat ggaaatgcat 2760 gaacgacgca gattagctgc tttatttacc gtgtgcaatt atttaaataa agatattagg 2820 gctctatgcc ccgaaataat aaaccgctca cctggcttag tgctaggttc tggcaaatct 2880 agttacgcta gacgacgcag ggccaagagc atagggcgat gtgaacggtg ttatcgtgtg 2940 taccccccca tatgtaatag taagtgtgat aatactacat gtgtgccagg tatttcaccc 3000 aatcaagacg ttgtcaacta catcaagcac ggagtaactg aggtgatacc gcgcttctga 3060 gttctgccta agacctaaat aatattaagg gtgaaactat aaaaataatt tgtttttaaa 3120 ctattttagc 3130 //