Dbfetch

Dbfetch

ID   GQ404844; SV 1; circular; genomic DNA; STD; VRL; 1723 BP.
XX
AC   GQ404844;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   11-APR-2025 (Rel. 144, Last updated, Version 2)
XX
DE   Human associated cyclovirus 2 isolate PK5006, complete genome.
XX
KW   .
XX
OS   Human associated cyclovirus 2
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes;
OC   Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus insaan.
XX
RN   [1]
RP   1-1723
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1723
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
DR   MD5; 978adfcfafa374eb63cbab9f384370af.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1723
FT                   /organism="Human associated cyclovirus 2"
FT                   /host="Homo sapiens"
FT                   /isolate="PK5006"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Pakistan"
FT                   /isolation_source="stool"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:2038720"
FT   gene            23..859
FT                   /gene="rep"
FT   CDS             23..859
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /protein_id="ADD62451.1"
FT                   /translation="MANRTVRRFCFTWNDHPVEAYEKCEKFIEKFCKYGIVGEEYAPTT
FT                   GMPHLQGFCNLNKPTRFSTIKKHLDNSIHIEKANGTDEQNQKYCSKSGIFFESGVPNKQ
FT                   GQRNDLQSLVEFIHEKRPTIRDIATEHPTTYIRYFRGIERMLQLVNPIKQRDFKTEVYY
FT                   YWGPPGTGKSRRALEEAQAFNTESIYYKPRGLWWDGYEQQDSVIIDDFYGWIKYDEMLK
FT                   IMDRYPYKVQVKGAFQEFTSKKIFITSNVDTDELYKFVGYTTAAFERRITNKEYMA"
FT   gene            complement(856..1515)
FT                   /gene="cap"
FT   CDS             complement(856..1515)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /protein_id="ADD62452.1"
FT                   /translation="MALKRLRRMPQRRNRFVRSRRRVFKRRLRFRRRPISTLFTKLTRS
FT                   VQVYSDARTGGVASLHQTLEQFSEHKNLAPNFERVKIYRLNVRVFPQQNVANNTSSRVT
FT                   NYAIVPYHRPLVKPATPNFPTCLSIDKSKIRRMTQFGRMSFVPAVRLGTDTETSTLYNT
FT                   TKWRPEFDIGVDADKEILYCGFLCFEGDSTIAESHPVNFTVVMDLFVKYKNQRSFI"
XX
SQ   Sequence 1723 BP; 560 A; 384 C; 368 G; 411 T; 0 other;
     atacccgcca cttcgttgca cgatggcaaa ccgtacagtg cgccgattct gcttcacgtg        60
     gaacgaccat ccagtcgaag catacgaaaa gtgcgaaaag tttattgaaa aattctgcaa       120
     atatggaatc gtgggagaag aatacgctcc aactacagga atgccccatc tccaaggttt       180
     ctgtaacctt aataaaccaa cacgcttcag taccatcaag aagcacctcg ataacagcat       240
     ccatattgag aaggcaaatg ggacagacga acaaaaccaa aaatactgtt caaaatcagg       300
     catatttttt gaatcgggcg tacctaacaa acaagggcaa cgcaatgatc tgcaatctct       360
     ggtggaattc attcacgaaa agaggccaac gatacgagat attgccaccg aacatcctac       420
     gacatacata cgctacttcc gtggaatcga aagaatgctg caactggtta acccgatcaa       480
     acaacgcgat ttcaagactg aagtatatta ttattgggga ccgccgggga ctggcaaatc       540
     tagaagagca cttgaagagg cacaagcatt caacactgag tcaatatact ataaaccacg       600
     cggattgtgg tgggacggat acgaacaaca ggacagcgtc atcatagacg acttctacgg       660
     atggatcaaa tacgacgaaa tgctgaaaat aatggaccgc tacccataca aggtacaagt       720
     gaaaggagct tttcaagaat ttacaagcaa aaaaattttt attacatcaa atgttgatac       780
     agacgaatta tacaaatttg taggctatac aacagccgct tttgaacgtc gcattacaaa       840
     taaagaatac atggcttaaa taaatgagcg ttgattttta tatttaacaa acaaatccat       900
     aacaactgta aaattaacag gatgcgattc cgcaatagta ctatctccct caaaacataa       960
     aaatccacaa tataatattt ccttatccgc atcaactcct atatcaaact caggtcgcca      1020
     ttttgtagta ttatataaag tagaggtctc cgtatcagta ccaagacgaa cagcaggcac      1080
     aaaactcata cgtccaaatt gcgtcatcct tcgtatcttg ctcttatcaa tagataaaca      1140
     ggtcggaaag ttcggagtag caggtttcac aagaggtcga tgatatggta caatagcata      1200
     attagtaact cgcgatgacg tattattcgc aacgttctgt tgtggaaaaa cccttacatt      1260
     cagtctatat atcttcacac gttcaaaatt tggtgcgagg ttcttatgtt cagaaaattg      1320
     ttccaacgtt tgatgcaggg aagccacacc accagttctt gcatcagaat atacttgcac      1380
     agaacgagta agtttagtaa ataatgtaga aattggacgg cggcgaaatc gcagtctacg      1440
     cttgaaaact cgcctgcgag accggacaaa ccggttccta cgctggggca ttcgccgcaa      1500
     acgcttcaag gccatgcctt tcactttaac gctcggtata aaaataactc ctcttcgggt      1560
     gacggcttgt tgccaagtga acgttgcgcc cccccccgtc ggccgggcag gctccccggc      1620
     ggggggaggg cgtgcgtgtt ggaacgtgtt acgggcggat gttagcggag cggatagtac      1680
     atgcggttac gaagtcacgg ttacgaagtg gcggggtaat act                        1723
//