ID GQ401366; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC GQ401366; EF409997; XX DT 07-SEP-2010 (Rel. 106, Created) DT 22-JUL-2012 (Rel. 113, Last updated, Version 6) XX DE Ribgrass mosaic virus strain RMV Actinidia-AD isolate M1/C, complete DE genome. XX KW . XX OS Ribgrass mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RC Reference 1 (bases 1-1527) RX DOI; 10.1007/s10658-008-9409-8. RX AGRICOLA; IND44203089. RA Chavan R.R., Pearson M.N., Cohen D.; RT "Partial characterisation of a novel Tobamovirus infecting Actinidia RT chinensis and A. deliciosa (Actinidiaceae) from China"; RL Eur. J. Plant Pathol. 124(2):247-259(2009). XX RN [2] RP 1-6311 RX DOI; 10.1007/s00705-012-1292-0. RX PUBMED; 22456910. RA Chavan R.R., Cohen D., Blouin A.G., Pearson M.N.; RT "Characterization of the complete genome of ribgrass mosaic virus isolated RT from Plantago major L. from New Zealand and Actinidia spp. from China"; RL Arch. Virol. 157(7):1253-1260(2012). XX RN [3] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (28-JAN-2007) to the INSDC. RL School of Biological Sciences, The University of Auckland, Symonds Street, RL Auckland 1142, New Zealand XX RN [4] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (19-JUL-2009) to the INSDC. RL School of Biological Sciences, The University of Auckland, Thomas Building RL Symonds Street, Auckland 1142, New Zealand XX DR MD5; 7cfcd2e962655c9faa48728fde4ab709. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX CC On Sep 4, 2010 this sequence version replaced gi:148608709. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Ribgrass mosaic virus" FT /host="Actinidia deliciosa" FT /strain="RMV Actinidia-AD" FT /isolate="M1/C" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="23-Dec-2003" FT /identified_by="Ramesh R. Chavan and Michael N. Pearson" FT /note="virus can be transmitted in the following lab hosts: FT Chenopodium amaranticolor, C. quinoa, Nicotiana FT benthamiana, N. clevelandii, N. glutinosa and N. FT occidentalis subgroup: Tobamovirus subgroup 3" FT /db_xref="taxon:51680" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="RNA replicase" FT /note="contains RNA polymerase; translated by readthrough" FT /db_xref="GOA:E0WXS7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E0WXS7" FT /protein_id="ACV13194.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIQSYINRLERQRRPVPEYQ FT RAAFNNYAENPHYVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQMFDRTTKELIWSSLCDALMGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRFVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEVKSAERNDVLSLR FT NDAPFPCVKNLVEGSVPAYGICPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPTAKVILVDGVPGCGKTKEIIEKVNFQEDLILVLGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVVDEKEIRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVNAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT YQLQIDAVFKGTNLFVQTPKLGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQIPKEQPSFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVAEKFWDAYIDKEFSGTNKMSLTRESFSRWLSRQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSS FT KFLFYTRKTPGQIEEFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVI FT KAAFCGDDSLVYIPKGMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDSVHLEELRESLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIIKYLSDKRLFKDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:E0WXS8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E0WXS8" FT /protein_id="ACV13195.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIQSYINRLERQRRPVPEYQ FT RAAFNNYAENPHYVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQMFDRTTKELIWSSLCDALMGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRFVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEVKSAERNDVLSLR FT NDAPFPCVKNLVEGSVPAYGICPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPTAKVILVDGVPGCGKTKEIIEKVNFQEDLILVLGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVVDEKEIRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVNAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:E0WXS9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:E0WXS9" FT /protein_id="ACV13196.1" FT /translation="MSMVSYEPKVNDFLFLTNKEKILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLNDVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDVKIEAGWQPLALEVVSVAM FT VANNVVMKGLREKIIAISDPDVEGFEGVVDEFVDSVEAFKAVDNFRKKKRKIGGSEVVS FT KNKYRPEKHAGPNSLYIKEENVLQHHELESVPVFRSGVGRAHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:E0WXT0" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:E0WXT0" FT /protein_id="ACV13197.1" FT /translation="MSYNITSSNQYQYFAAVWAEPTPMLNQCVSALSQSFQTQAGRDTV FT RQQFSNLLSAIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTKNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFEAIVPWTTTPAT" XX SQ Sequence 6311 BP; 1844 A; 1185 C; 1576 G; 1706 T; 0 other; gtttagtttt attgcaacaa caacaacaaa atacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacaat cgacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ttggtgaatg atttagcgtc tcgtcgtgtt tacgataatg cggtcgagga 180 gctgaatgct cgttctaggc gtcccaaggt tcatttctcc aaagcagtgt ctacggaaca 240 gaccctgatt gcaacaaatg cttatccgga gtttgagatc tccttcactc atacgcaatc 300 tgcagtgcat tccttagcag gaggccttcg atcgcttgaa ctggagtatc taatgatgca 360 agttccattc ggatctctga cgtacgatat cggcggcaac ttttctgcgc atcttttcaa 420 ggggcgcgac tacgttcact gctgcatgcc taacttggac gtgcgtgaca tagctcgtca 480 tgaaggacac aaggaagcca ttcaaagcta cataaatcgc cttgagaggc agcggcgacc 540 tgtgccggaa tatcagaggg cggctttcaa caactacgcg gagaatccac attacgttca 600 ttgtgatcgt ccatttcaac agtgtgaatt gacgacggca aatggtactg atacctacgc 660 cgtggcgctt catagtattt atgatatccc tgttgaagag tttggttcag cgcttctcag 720 aaagaacgtt aaaacttgtt tcgcggcttt ccatttccat gagaatatgc ttctagattg 780 tgacactgtt acacttgatg aaatcggagc aactttccag agagccggcg ataaattaag 840 ttttttcttc cataatgaga gcactcttaa ttatacccat agctttagta atataataaa 900 atatgtgtgt aaaacgtttt tccctgcaag tcaaagattt gtatatcaca aggagttctt 960 agttactaga gtcaatactt ggtattgtaa gtttactaga gtggatactt ttactctttt 1020 ccgtggtgtg tatcataata atgtagactg cgaagagttt tacaaggcta tggatgatgc 1080 gtgggagtat aagaagacgc ttgcgatgct taatgcagaa agaaccattt tcaaggataa 1140 cgccgcgttg aacttctggt ttccgaaagt gagggacatg gtcatcgttc ctctttttga 1200 cgcatccatt acgtctggaa agatgtctag aagagaggtt atggtgaaca aggacttcgt 1260 ttacacagtc cttaatcaca taaagacgta ccaagccaaa gctttaactt acgcaaatgt 1320 tctgtccttt gtagagtcaa ttaggtccag agtcataatt aacggtgtta ctgccagatc 1380 tgaatgggac acggataagg caattctagg tccactggcg atgacatttt tccttataac 1440 aaagttgggt catgtacagg atgagataat cctgaagaag ttccagatgt tcgacagaac 1500 caccaaagag ttgatttggt ccagtctctg cgatgccctg atgggggtta ttccctcggt 1560 caaggagact ctcgttcgtg gtgggtttgt gaaagtggcg gaagaggcct tagagattaa 1620 gatccccgaa ctgtactgca cgttctccga cagatttgtg ctacagtaca agaaggcgga 1680 agagtttcag tcgtgcgacc tttccaaacc tctagaggaa tctgagaagt attacaatgc 1740 attatctgag ctatcggtgc tcgagaatct cgattctttt gacttagagg cgtttaagac 1800 tttgtgccag cagaaaagtg tagaccctga catggcagct aaggtggtgg tggcaattat 1860 gaagtgtgaa ttaacattgc ctttcaagaa acctacagaa gaggaaatct cagagtcgct 1920 taaaaccgag gaggtaaaaa gtgcggagcg aaacgatgtg ttgagcttac ggaatgatgc 1980 tcctttcccg tgtgtgaaaa atctcgtaga gggttctgtg ccggcgtatg gaatatgtcc 2040 gaaaggtgga ggtttcgaca agttcgacgt ggatatagcc gattttcatc tcaagagtgt 2100 agatgcagtg aaaaggggag ctatgatgtc agcagtgtac acaggatcga ttaaagttca 2160 acagatgaag aactatatcg attacttaag tgcgtcgctg tcagctactg tctccaatct 2220 ctgtaaagtg cttagagatg ttcatggagc cgatcctgag tcgcaggaga aatctggagt 2280 gtgggatgtg agaagaggac gctggttact caaaccgaac gcgaaaagtc acgcttgggg 2340 agttgcggaa gacgccaacc acaagttggt tatagtattg cttaactggg atgaggggaa 2400 accagtttgt gacgaaacat ggttcagagt agctgtgtcg agtgattctt tagtgtactc 2460 cgacatggga aaactgaaga cgttaacgtc ctgctgttta gacggtgaac ctccggagcc 2520 aaccgcaaag gtaatcttgg ttgatggtgt tcccggttgt ggaaagacga aagagattat 2580 cgaaaaggta aactttcaag aggacttgat tctggtcctt gggaaggaag cttcgaagat 2640 gattatcaga agggcaaatc acgcaggtgt gatgagggcg gataaagaca acgttagaac 2700 ggtggattcc ttcttgatgc accctccgag gagagtgttt aagaggttat tcattgacga 2760 agggttgatg cttcacactg ggtgtgttaa ctttttgcta ctactatcgc actgcgacgt 2820 ggcgtatgtg tatggggata cacaacagat tccgtttatc tgtagagttg caaacttccc 2880 gtatcctgca cactttgcaa aacttgtagt ggacgagaag gagatcagaa gaactacgct 2940 gaggtgtcct gctgatgtca catttttctt gaacaagaag tacgacgggg cggtaatgtg 3000 taccagcgcc gttgaaaggt ctgtgaatgc ggaagtggta agaggaaaag gtgcttttaa 3060 cccaataact ttaccgttag agggaaaaat attgaccttt actcaggctg acaagttcga 3120 gttgctggaa aagggttacg cggacgtgaa cacagtgcac gaggtgcaag gggaaacata 3180 cgagaagact gctatcgttc gattgacatc gactccgtta gagatcatat caagagcgtc 3240 accacatgtt ttagtggctc tgactagaca cacaacgcgt tgtcggtact ataccgttgt 3300 gttggatcca atggttaatg tgatttcgga aatggaaaag ttgtcgaatt ttattctcga 3360 tatgtacaag gtcgaagctg gcatccaata gcaattacag atagatgcag tattcaaggg 3420 aacgaatctg ttcgttcaga cacccaagtt aggagattgg cgagacatgc aattctatta 3480 tgacactctt ctccctggaa acagcactat tcttaacgaa tttgacgctg ttaccatgaa 3540 tttgagggat atttccttaa acgtcaagga ttgcagaata gacttctcca aatctgtgca 3600 aattcccaag gagcaaccaa gttttctcaa gcccaaaata agaaccgcgg cagaaatgcc 3660 aagaactgcg ggcttgctag aaaatctagt tgccatgatt aaaagaaaca tgaatgcgcc 3720 ggatttgaca gggacgattg atatagagga tactgcatca ctggtggccg aaaagttttg 3780 ggatgcatac attgacaagg agtttagtgg aacgaataaa atgtccttaa ctagggaaag 3840 tttttctaga tggctctcta gacaagagtc atctacagtt ggtcagctag cggattttaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaagagcc aaccaaagca 3960 gaagttagac ttaagcattc aggatgaata tcctgcattg cagacaatag tctatcactc 4020 gaagaagatc aatgctattt tcggtcctat gtttgcagaa cttacgagga tgctgctcga 4080 gagagtggac tcttcaaaat ttctgtttta cacgagaaaa acacctgggc aaatagaaga 4140 atttttctct gaccttgatt caacccaggc gatggaaatt ctggaactcg acatctcaaa 4200 gtacgacaag tcacaaaacg agtttcattg cgctgtagag tacaagatct gggaaaaact 4260 tgggatagat gagtggttgg ctgaagtgtg gaaacaggga cacaggaaaa cgactttgaa 4320 ggactatacg gccggaatca aaacatgtct ttggtaccaa aggaaaagcg gtgatgtgtc 4380 aacctttatc ggtaacacta ttatcattgc aacctgtctg agttcgatga ttccgatgga 4440 caaagtgatt aaagcagcct tttgcggaga cgacagttta gtttacattc ccaaaggtat 4500 ggacttgcct gatattcaag ccggtgcaaa cctcatgtgg aatttcgagg cgaagctttt 4560 caggaaaaag tatggttact tctgcggtcg ttacgttatt catcatgata gaggagcaat 4620 tgtgtattat gatccgctca aactaatatc taagttaggt tgtaaacata ttagggattc 4680 agttcattta gaagagttac gtgagtcgtt gtgtgatgta actagcaact taaataattg 4740 tgcgtatttt tcacagttgg atgaggccgt tgccgaggtt cataaaaccg cggtaggcgg 4800 atcgtttgct ttttgtagta taattaaata tttatcagat aagaggttgt tcaaagattt 4860 gttttttgtt tgataatgtc gatggtttcg tatgagccca aggtgaatga tttccttttc 4920 ctcacgaata aggaaaagat actcccgaaa gctctaacga gacttaagac tgtgtctatt 4980 agtactaagg atataatatc tgtcaaggag tctgagactt tgtgtgatat agatttgtta 5040 aatgatgtgc cattagataa gtatagatac gtgggtattt taggagctgt ttttacagga 5100 gagtggcttg taccagactt tgtcaagggc ggagtgacaa taagcgtgat agacaagcgt 5160 ctggtgaact ctaaggaatg tgtgatcggt acgtacagag cagcggccaa gagcaaaagg 5220 ttccagttca aactggttcc gaattacttc gtgtctactg cagacgccaa gaggaaaccg 5280 tggcaagttc atgtgcgtat tcaagacgta aagatagaag cgggttggca accattagct 5340 ctagaagtgg tatccgttgc tatggttgct aataatgtgg ttatgaaggg tttgagagaa 5400 aagatcatcg caataagtga tccggacgtc gaaggtttcg aaggcgtggt tgacgaattc 5460 gtcgattcgg ttgaagcatt taaagcggtt gacaatttca ggaaaaagaa aaggaagata 5520 ggaggaagtg aagtagtaag taagaataaa tatagaccgg agaagcacgc cggtcctaat 5580 tcgttatata ttaaggaaga aaatgtctta caacatcacg agctcgaatc agtaccagta 5640 tttcgcagcg gtgtgggcag agcccacacc aatgcttaat cagtgcgtgt cggcattgtc 5700 acagtcgttt cagacacaag cagggagaga tactgttaga cagcaattct caaacttgtt 5760 gagtgcgatt gtggcgccaa accagcggtt cccagataca gggttccggg tgtatgttaa 5820 ttcggcggtt ataaagccgt tatacgaggc tcttatgaag tctttcgata ctaaaaatag 5880 aattatcgag acggaagagg agtcacgccc gtcagcgtct gaagtagcaa acgcaacaca 5940 gcgtgttgat gatgcgaccg tcgccattag aagtcaaatt cagcttctgc tgaatgaact 6000 ttcaaatgga cacggttata tgaacagagc ggagttcgag gctatagtgc cttggactac 6060 gacacctgct acttaagcgt ggtgtgcacg atagcgcaca gtgtttttct ctccacttaa 6120 atcgaagaga tatacctacg gtgtaattcc gtggggtgac gtaaaccaaa ttacgtaatg 6180 ttttgggttc catttaaatc gaaaccccat atttcctgga tcgccctgtt aacgcacgtt 6240 ggacgtgtat tacagtggga atatgtaaaa gcgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //