ID GQ398110; SV 4; linear; genomic DNA; STD; VRL; 7451 BP. XX AC GQ398110; XX DT 08-JUL-2011 (Rel. 109, Created) DT 06-DEC-2011 (Rel. 111, Last updated, Version 3) XX DE Pineapple bacilliform comosus virus isolate HI1, complete genome. XX KW . XX OS Pineapple bacilliform CO virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7451 RA Sether D.M., Melzer M.J., Borth W.B., Hu J.S.; RT "Pineapple badnaviruses in Hawaii"; RL Unpublished. XX RN [2] RP 1-7451 RA Sether D.M., Melzer M.J., Borth W.B., Hu J.S.; RT ; RL Submitted (20-JUL-2009) to the INSDC. RL Plant and Environmental Protection Sciences, University of Hawaii, 3190 RL Maile Way, Honolulu, HI 96822, USA XX RN [3] RC Sequence update by submitter RP 1-7451 RA Sether D.M., Melzer M.J., Borth W.B., Hu J.S.; RT ; RL Submitted (26-JUL-2011) to the INSDC. RL Plant and Environmental Protection Sciences, University of Hawaii, 3190 RL Maile Way, Honolulu, HI 96822, USA XX DR MD5; 33a3dc62e91bb737a1d35333386d1dd0. XX CC On Dec 5, 2011 this sequence version replaced gi:341575850. XX FH Key Location/Qualifiers FH FT source 1..7451 FT /organism="Pineapple bacilliform CO virus" FT /host="Ananas comosus cv. Champaka Smooth Cayenne" FT /isolate="HI1" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="Jul-2007" FT /db_xref="taxon:2033633" FT CDS 585..1100 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:G8Z331" FT /protein_id="AEV42074.1" FT /translation="MSPRYWEQKLESEYKRNSHSQEVLDLDYLLEKVSHGDLAHNLHVC FT YRSDLANKALVGQSQKREALQMRLKQQNERKLDSVLENLEKALKEQRAELADLKASSLD FT ATSDEIRKLRQDWSKRRPLSKEDVEELVILISEQPKEIEKQSEALTEELTSKVTRLLIL FT QLLGRQLG" FT CDS 1097..1495 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:G8Z332" FT /protein_id="AEV42075.1" FT /translation="MSLQIKRHTPAYKEALQKTASIWDSGVGQTERGIVASGTLTRQLN FT SLLFLLLKLHDKVSRLEEKVKRVAAPQKADISWALEYLQDIEEGGSQLDKLQTIKGATR FT KKRLQERGKLKVYEDPYIILKGEISTSK" FT CDS 1492..6972 FT /codon_start=1 FT /product="putative polyprotein" FT /note="ORF3; contains viral aspartyl proteinase, reverse FT transcriptase, RNase H, and zinc finger regions" FT /db_xref="GOA:G8Z333" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G8Z333" FT /protein_id="AEV42076.1" FT /translation="MMNTTPRGVEQPLVWDQIWGYRRTQRARYEAQRRLAWRTILGMQP FT REHTLAMVIDPEAELQRSMSERARTVPAEVLYMTRRDHHRVYYFRCEERMPPTDSDQQR FT TFITPESYEQLKEARCEYIHLGILLVRVQILHKRYAGTMAFIAWRDTRWDGRKSIIYSM FT EVDLSEGSQIVYVIPDMMTTIRDCYEHIQISIQRKGYDDWNGESNLLITRSIMLRLSNT FT PNVGFYYKILRVRDYLKSKGVKAIDASQQYDGSLGIKFGNYERSTSGPPQYNEHDEDVD FT LDEDDYFQELLIDYQPDSQLYHDNPLLIPTQHPFPSSYAPLTPPALTRLPASGGNTPDW FT FRPVLLDFLRGLDVELQTTDDFTAEEEELFWSFVNQLEEEENLYCKESPSCLFTDDESL FT EYPELRKISDIIYSTVVDSNPGNQYMIGDTDGPPGFAPPQAPFRWKNPHEQFELPSALD FT QQWHILVMPLNFDPKVFWRWEESIVLNHLADRNLPTRLDKRKYVENLLGEIEKITFQTW FT RMRYTPEFVSLQQRVLGYKGTQNLLTQFRNEFFLEDPERGTTVSQDAAYKAIKSLTWQE FT MSWLGFYMSTYFDLRYLSGRMWVNEELSDDFFTKLPMGLGDYFFSRYPGNSIGVPARIP FT FTQVYLEERCREAAYQRSLKTLDFCKDFPIPNFYRKGPQKKYGVRKSTTYRGKPHKTHV FT RIDKTKDDHLKITNCKCYICGEEGHFARDCQNPMKIVDRVLDEDALDIQDGMDVVSVGE FT NEDVQTDIYSVSEGEYSSLEAYHNYEEAWDVFSLVEEIIPIEERFNVHSAYPYRDSLIG FT KGISWRFQVRVSPKEYYCKHECGFYCNFLKNCSAWGPTAQTGERMDCPLCNLTICSSCS FT NHCSDITMPSSSTASWQESWKNIALELENEKEAHILELNQALGQLKHTEHQDDALEREE FT KEKAKKAEESLQELLKEEKEKAKKAEESLQELLRKRKEKVRNAEESQKETPLLVEKLQR FT EEVAVITEEENLSYSAIKSPTRYNGLYNLKAKIEVEGHAQVLLQGRDREEVAVITEEEN FT LSYSAIKSPTRYNGLYNLKAKIEVEGETVVLNAILDTGATVCIIQEAKVPDRLCEQAAV FT SYTLHGVNSTTSGRKVLKGGKLWLGEQFFRLPRTLVADMVLTEGVEMIVGCNFLRSLEG FT GLRIEGEVVTFYKLVTNVQSCRSTHAFGAIIEELEMAEDEYIDLNLMLATEPAVGEEFA FT KLPLYYQLKAEGFIGENPLLHWQRNQVICELQIKNPELTIEDRPLKHVTPALKEVMQKH FT VDKLLELKVIRPSTSRHQTTAMIVYSGTEVDPVTKKEKRGKERLVFNYKRLNDNTETDQ FT YSLPGISTILQKIGHSKIYSKFDLKSGFHQVAMHPDSVPWTAFWVINGLYEWLVMPFGL FT KNAPAVFQRKMDHCFRGTEDFIAVYIDDILVFSETPEQHKKHLEVFLQIVRKNGLVLSP FT TKMKVGVQQVDFLGATIGNSRIRLQPHIIQKVVQFNNKDLQTTKGLRSFLGILNYARSY FT IPQMGKLLGPLYSKVSPTGEKRMNKQDWAIIEKIKQMVEQLPELELPPNGSVIVIETDG FT CMEGWGGICKWKFPGAPRNQEKVCAYASGRFQPIKSTIDAEIQAVINSLDKFKIYYLNQ FT KELVVRTDCQAIVSFYEKMANNKPSRVRWLTFSDFITGIGAPVKFEHIDGKDNLLADTL FT SRLVVMMLHEEAYTEPLQRILPLLSTKEAVHVLTHKPILKCGCGKTAIRKMSRTSRNPN FT RHYYCCEKDKCHCWWWEDHLLQFAAEKGALEQEALRMEELFDRLQFNTNEPHGGPLEDD FT DQASLLDAVGL" XX SQ Sequence 7451 BP; 2244 A; 1746 C; 1818 G; 1643 T; 0 other; tggtatcaga gccatgtttc tagcgtaaac accttcgggg gcccaaaggg ggcctgacaa 60 tggtgaagtt ttagataagg cgaacttcct tcttatcatc atacttctgt gtagcaatct 120 tattagcata aattgttttc ggagtaaata actccgaaaa caatttatgc taataagatt 180 gctacacaga agtataagtt tactaactaa caagggaata aacctgatgt ttgttaaggg 240 gcaaatgagc aaaagacctg agcaaaacag atagcccggg agtaattact cccgggctat 300 ctgttttgct caggtacggg gaattgaatc gtacgcagat agcccaagag ggcctcaaac 360 gcgtgaggaa attctgtacc tgatacaaaa cgaaggggac actttctaag aggactacct 420 tataagcagt tagtcacaag tcaaaggctc ttgagatagc gaagggggtt atatgagctt 480 tcagaaggaa attagtaagc cgtaataaaa caaaacaacc taaggtcacc cccgggcacc 540 cgttcgtcta taagtgtgtt ttctagaaat ttggtattct gtttatgtcc ccgagatatt 600 gggaacaaaa actcgaaagc gaatacaagc gcaattctca cagtcaggag gtcctagacc 660 ttgactacct gcttgagaag gtcagtcacg gcgacttggc tcacaacctg cacgtgtgtt 720 accgcagcga cctggcaaat aaggccctcg tcggacagag tcaaaaacgc gaagcgctgc 780 agatgcgctt gaaacagcaa aacgaacgca aactggattc ggtgctagaa aacctcgaaa 840 aagctctaaa ggagcagcgt gcggaactgg ccgacctgaa agcgagcagc cttgacgcta 900 caagcgacga aatccgcaaa ttacgccaag attggtcgaa acgccgacct ctgtccaaag 960 aagacgttga ggaactcgta atcctgatta gtgagcagcc aaaagaaatt gaaaaacaaa 1020 gtgaagcact aacagaagag ctaaccagca aggtgacccg gctcctgatc ctccagttgt 1080 tgggacgcca acttggatga gcctccagat caaaaggcac accccggcct acaaggaggc 1140 cctccagaag accgcctcca tctgggactc cggcgtgggc cagaccgagc gcggcattgt 1200 ggcctccggc acactcaccc gccagctcaa ctccctcctc ttcctcctcc tcaagctcca 1260 cgacaaggtg tccagactcg aggagaaggt gaagcgcgtg gcagcccccc aaaaggccga 1320 catttcctgg gccctcgagt acctccagga catcgaggag ggaggatccc agctcgacaa 1380 gctccagacc atcaagggcg ccacccgcaa gaagcgcctc caggagcgcg gcaagctcaa 1440 ggtgtacgag gacccgtaca tcatcctcaa gggggagatc tccaccagta aatgatgaac 1500 accactcctc gtggagtgga acagcccctg gtctgggacc agatatgggg ctaccgacga 1560 acgcaacgag cccgctatga ggctcagagg cggctcgcct ggagaactat tctgggaatg 1620 cagccaaggg agcataccct ggcaatggtg atcgaccctg aagcggagct gcaacgttca 1680 atgagtgaac gtgccagaac cgtccctgcc gaagtcctct acatgacccg gcgggatcat 1740 cacagggtct attactttcg atgcgaggaa aggatgcctc ctaccgacag tgaccagcaa 1800 cggaccttca tcactccgga aagttacgag cagctgaagg aggcgaggtg tgagtacatc 1860 catctcggaa tcctgctggt aagagtacag attctacata agcggtacgc cggtaccatg 1920 gcattcatcg cctggagaga caccaggtgg gatgggagga aatccattat ctactccatg 1980 gaggttgacc tatctgaagg ctctcaaata gtctacgtca ttccggatat gatgactact 2040 atccgggact gctatgagca cattcaaata tcaatccaaa gaaagggata tgacgactgg 2100 aatggggagt ccaacctcct catcacaaga tcgatcatgt tgcgactctc caacacacca 2160 aatgttgggt tctactacaa gatcctacga gttcgtgact acttaaagtc caaaggcgtt 2220 aaggcaattg acgcctcaca gcagtatgac ggaagtctag gcatcaaatt tggtaattat 2280 gagcgcagta caagcgggcc cccacaatac aatgaacatg acgaagatgt agacctggac 2340 gaggacgact actttcaaga attattaatt gattaccaac ctgactcgca gctttatcat 2400 gataacccac tcctcattcc aacacagcat ccatttccat cctcatatgc accactgaca 2460 ccacccgctc ttacgcgcct acctgcatca ggtggcaaca ccccggactg gttccgtccc 2520 gtcttgcttg atttcttgag agggttggat gtggagttac aaacaacgga tgacttcact 2580 gcagaggagg aagagctgtt ctggtccttc gtcaaccaac tagaagaaga ggagaacctt 2640 tactgtaagg aatctccttc atgtctattc actgatgacg aatctctgga atacccggag 2700 ttgagaaaga tatctgatat catctactcc acggtagtag acagcaatcc gggaaatcag 2760 tatatgatag gagatactga tggaccaccc gggtttgcac caccacaagc acctttcagg 2820 tggaagaacc cccatgagca atttgagcta ccatcagcac tagaccaaca atggcatatc 2880 ttagtcatgc ccctaaactt tgatccaaag gttttttggc ggtgggaaga atccatcgtt 2940 ctaaaccatc tggcggacag aaacttgcca acccgcttag acaagagaaa gtacgtggag 3000 aacctcctag gggaaatcga gaaaattaca ttccagacct ggaggatgag atacacacct 3060 gaattcgtaa gcctgcagca gcgagtgctt ggctacaagg gcactcagaa cctgctcact 3120 cagttccgaa acgaattctt cctggaggat cctgaacgag gaaccactgt ttctcaggat 3180 gcggcctata aggccatcaa gagcttgacg tggcaagaaa tgtcgtggct aggattctat 3240 atgtctacct actttgatct gcgttacctg tcaggaagga tgtgggtgaa tgaggagcta 3300 tctgacgact tcttcaccaa gctccccatg ggtttaggcg actatttctt ttcgaggtac 3360 cccggcaact caataggggt tccagcaagg atcccattca cccaggtata cctggaagag 3420 cgttgtcggg aggcagccta tcaacgctcc ctaaagaccc tggacttctg caaagatttc 3480 ccaatcccga acttctaccg caaaggaccc caaaagaagt acggagtaag gaagtccacc 3540 acctatcgcg gcaaacctca caagacccat gttaggattg acaagacgaa ggatgatcac 3600 ttgaagatca caaattgcaa gtgctacatc tgcggagaag aaggacattt tgcaagggat 3660 tgccaaaacc cgatgaagat cgttgatcgg gttcttgacg aagatgcact agacatccaa 3720 gacggaatgg atgtcgtctc ggtcggagag aatgaagacg tgcagaccga tatctactcc 3780 gtctctgaag gagagtattc ctcacttgag gcataccaca actacgaaga agcatgggac 3840 gtcttctccc ttgtggaaga aattattcca attgaagaaa gatttaacgt acattcggcg 3900 tatccatatc gagactccct cattggaaag ggcatctcct ggaggttcca ggtacgtgta 3960 tccccgaagg aatactattg taaacacgag tgcggtttct actgcaattt tctaaaaaac 4020 tgcagtgcgt gggggccaac agctcaaact ggtgagcgta tggattgtcc cctttgtaat 4080 ttgactatct gctcttcctg ttccaatcac tgctctgaca taactatgcc atcatcctca 4140 acagcatcat ggcaagaaag ctggaaaaac atcgccttgg agctggagaa tgaaaaggag 4200 gctcacatac tagagctaaa tcaagcattg ggacaactga aacacacaga gcatcaggat 4260 gatgcgctag aaagggaaga gaaagagaag gcaaagaagg ctgaggaaag ccttcaggaa 4320 cttctgaagg aagagaaaga gaaggcaaag aaggctgagg aaagccttca ggaacttctg 4380 aggaagagaa aggaaaaagt aaggaacgct gaagaaagcc agaaggagac gccgctgtta 4440 gtagaaaaat tgcaacgaga agaggtagct gtgataactg aggaggagaa tctcagttat 4500 agcgcaatca agtctccaac aaggtacaac ggcctgtaca atttaaaggc caaaattgaa 4560 gttgaaggac acgcccaggt gctcctccag ggccgcgacc gagaagaagt agctgtgata 4620 actgaggaag agaacctcag ttatagcgca atcaagtctc caacaaggta caacggcctg 4680 tacaatttga aggccaaaat tgaagttgag ggagaaactg tagtccttaa cgccatcctg 4740 gacactggag ctacggtatg tatcatccaa gaagccaagg ttcctgatcg actgtgtgaa 4800 caggctgcag tgagttacac ccttcacggt gtcaactcaa ccacatcagg aagaaaagta 4860 ttgaagggag gcaagttatg gcttggagaa caattcttca ggcttccaag aacactagtc 4920 gccgacatgg tgttgacaga gggagttgag atgatcgtgg gatgtaactt cctacgaagt 4980 cttgaaggag gactcaggat tgaaggtgag gtagtaactt tttataaatt agttactaat 5040 gtgcaatcat gcagaagtac acacgccttc ggagccatca tagaggaact cgagatggct 5100 gaggacgagt acattgacct caacctcatg ttagcaacag aacctgccgt aggagaagaa 5160 tttgccaaac ttcccctata ctaccaattg aaggctgaag gattcattgg agaaaatccc 5220 cttctccact ggcaacgaaa tcaagtgatc tgtgaactac agatcaaaaa ccctgagtta 5280 actatagagg accggcctct aaaacatgtt acgccggcct tgaaggaagt aatgcagaag 5340 cacgtcgaca agcttctgga attgaaggtg atccggcctt caacgagtag acaccaaaca 5400 actgcaatga tagtctactc cggaacggaa gtggatcccg taaccaagaa ggaaaagaga 5460 gggaaagagc gcttggtgtt caactataag cgcctcaacg acaacactga gacggatcaa 5520 tattcactcc caggtatttc tacgatcctt cagaaaattg gccactcaaa aatctattca 5580 aaattcgacc tcaagagcgg atttcatcaa gtggctatgc accccgactc cgttccatgg 5640 accgcattct gggtcattaa cggcctttat gaatggttgg tgatgccttt tgggcttaaa 5700 aatgcaccag cggtctttca aagaaaaatg gatcattgct ttagaggcac agaagacttt 5760 attgctgtct acatagacga tatcttagtc ttctctgaga cccctgagca gcacaagaag 5820 catctggagg ttttcctcca gatagtcagg aagaatgggc ttgtgttaag cccaacaaaa 5880 atgaaagtgg gagttcaaca agtagacttc ctaggagcta caattggaaa ttcacgcatc 5940 cggctccagc cccatattat ccagaaggtc gttcagttta acaacaagga ccttcaaaca 6000 acaaaaggac tccgaagctt cctcgggata ttaaattacg caaggagtta tataccacaa 6060 atggggaaat tgcttggtcc cctgtactcg aaggtttctc caactggaga aaagaggatg 6120 aacaaacagg attgggcgat cattgaaaag atcaagcaaa tggtggagca attgcccgag 6180 ttagagcttc cccccaacgg ttcggtaata gttatagaga cggacggatg tatggaagga 6240 tggggaggta tttgcaaatg gaaattccca ggcgccccaa ggaatcaaga aaaggtgtgc 6300 gcctatgcaa gcgggcgatt tcagccaatc aaaagtacta tcgatgcaga gatccaggcg 6360 gtgatcaaca gcctggataa attcaaaatc tattatctga atcaaaagga gctcgttgtg 6420 aggacggact gccaggcaat cgtatccttc tacgagaaaa tggctaacaa caagccatca 6480 cgggtaagat ggctaacgtt ctctgacttt attacaggca taggagcccc tgtaaagttc 6540 gaacacatcg acggcaagga taatctatta gcagacacgc tatcaagatt ggtcgtgatg 6600 atgctgcatg aagaggcgta tacggaacct cttcaacgaa tccttcccct tctgtcaaca 6660 aaggaggcag tacatgtgct cacccacaag cctatactca aatgtggttg cgggaaaaca 6720 gcaatcagaa aaatgtcccg cacctcgagg aacccaaatc ggcactacta ctgctgtgaa 6780 aaggataaat gccattgctg gtggtgggag gatcacctgc tacaatttgc tgctgaaaaa 6840 ggagcgctag aacaagaagc gctaaggatg gaggagctgt tcgacaggct ccaattcaac 6900 accaacgaac cgcatggagg accactcgaa gacgatgacc aagcctcctt actagacgcg 6960 gtgggcttat gaagcgggcg tggtaggccc ataatttatt attttaaaga caatcggact 7020 tttggctctg gttttgggcc ttggccctgg tttgtaataa tattatttgg ccctttatca 7080 ctaccaggac agctgttcct ggaaaaactg tggcccatta ctttttaagg cgcccctggt 7140 tttgtgcgcc catggttttt gctttctggt ttagcatctt gtaaagaagc ggtattatgt 7200 gcattgagga caagcaaagt gacgatgagg ccccacgagt actcggcttt gcttaccatc 7260 aacgcaagaa agataccctt tctgcctata taaggactta gtttagctca ttgctaagca 7320 tcgaagcaga acttcagttg cttactttga gagatattgt aagagtttcc atctatatat 7380 aaaatttctg agtgtttgct agtttctttc tgaaatctag taggaaagcg atcaaagggc 7440 gcgaaaaatc c 7451 //