ID   GQ395794; SV 1; linear; genomic DNA; STD; VRL; 1053 BP.
XX
AC   GQ395794;
XX
DT   24-JUL-2011 (Rel. 109, Created)
DT   24-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Pineapple bacilliform comosus virus isolate HI2 hypothetical protein gene,
DE   partial cds; hypothetical protein gene, complete cds; and putative
DE   polyprotein gene, partial cds.
XX
KW   .
XX
OS   Pineapple bacilliform CO virus
OC   Viruses; Ortervirales; Caulimoviridae; Badnavirus.
XX
RN   [1]
RP   1-1053
RA   Sether D.M., Melzer M.J., Borth W.B., Hu J.S.;
RT   "Characterization of a new pineapple badnavirus and other
RT   retro-transcribing elements from pineapple in Hawaii";
RL   Unpublished.
XX
RN   [2]
RP   1-1053
RA   Sether D.M., Melzer M.J., Borth W.B., Hu J.S.;
RT   ;
RL   Submitted (17-JUL-2009) to the INSDC.
RL   Plant and Environmental Protection Sciences, University of Hawaii, 3190
RL   Maile Way, Honolulu, HI 96822, USA
XX
DR   MD5; 7e2b1608183ea766af92ab8046b90b94.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1053
FT                   /organism="Pineapple bacilliform CO virus"
FT                   /host="Ananas comosus"
FT                   /isolate="HI2"
FT                   /mol_type="genomic DNA"
FT                   /country="USA"
FT                   /db_xref="taxon:2033633"
FT   CDS             <1..171
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF1"
FT                   /db_xref="InterPro:IPR010746"
FT                   /db_xref="UniProtKB/TrEMBL:G0T3E6"
FT                   /protein_id="ADN96019.1"
FT                   /translation="YLERRPLSKEDVEELAMLISEQPKFIEKQAEALLTEILSQVRETP
FT                   LEILERQAQTL"
FT   CDS             168..563
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF2"
FT                   /db_xref="UniProtKB/TrEMBL:G0T3E7"
FT                   /protein_id="ADN96020.1"
FT                   /translation="MSLANSPAYKKALAKTASIFEESGVGQTERGTQASIDTTRQLNSL
FT                   LFLVLKLNDKVQALQEEVQDIRKRIRRLEKAEVSASLLYDAELDDIIGQLSRLQTIKGA
FT                   APRKRLGERGRLKVYQDPYEILRKLKQ"
FT   CDS             560..>1053
FT                   /codon_start=1
FT                   /product="putative polyprotein"
FT                   /note="ORF3"
FT                   /db_xref="UniProtKB/TrEMBL:G0T3E8"
FT                   /protein_id="ADN96021.1"
FT                   /translation="MSTLVLTQREVTRSVQVDDQIRDYRPLTLIESPKVHSVARLKLDR
FT                   SYGRPSTLGRSDLMYDRSSYSCTLLDREIDPEAALEIRMLKPARVVPAEVLYQRPQRQQ
FT                   RVYLARSEERMNLTQVDQPRISFQSEESLENHSGQHIHLLALELVPVQPLHSLTATVAL
FT                   PV"
XX
SQ   Sequence 1053 BP; 252 A; 315 C; 268 G; 218 T; 0 other;
     tacttagaac gtcgccccct cagtaaggaa gatgtggagg aactcgccat gctgattagc        60
     gaacagccta agttcatcga gaaacaagct gaagccttgc tgactgaaat tctcagccag       120
     gtacgtgaga ctcctcttga aattctagag cggcaggcac agaccttatg agcctggcca       180
     acagccccgc ctacaagaag gcccttgcca agaccgctag cattttcgag gagagcggag       240
     tgggacagac tgaacgcggt acgcaagcct caatcgatac cacccgccag ctgaacagcc       300
     tgctgttcct ggtgctgaag ctgaacgaca aggtgcaggc cctgcaggag gaggtgcagg       360
     acatccgcaa gagaatcaga agattggaga aggccgaggt gagcgccagc ctgctgtacg       420
     acgccgagct ggacgacatc atcggccagc tgagccgcct gcagaccatt aaaggagccg       480
     ccccgcgcaa gcgcctgggc gagcgcggcc gcctgaaggt gtaccaggac ccctacgaga       540
     tcctgcgcaa gctgaagcaa tgagcaccct tgtccttact cagcgtgaag tgacacgtag       600
     tgttcaggtg gatgaccaga ttcgtgatta ccgtcccctc acattgatcg aatcccctaa       660
     agtacattcg gttgccaggc tcaagctcga tcgatcctac ggccgaccct ctacgcttgg       720
     taggtccgac ctcatgtacg atcgatcgtc gtattcgtgt actctacttg accgtgaaat       780
     tgaccccgaa gctgctctag aaattcgtat gctgaaaccc gctcgtgtag ttcctgccga       840
     agtactttac caacgtcctc aacgtcaaca acgtgtctat ctcgcccgct ccgaagagcg       900
     catgaatctt acacaagttg accagcctcg cattagtttt cagtctgaag agtccctcga       960
     aaatcatagt ggccagcaca tccatctcct tgctctcgaa ctggtgcccg tgcagcctct      1020
     ccattctctt acggctactg ttgccctccc cgt                                   1053
//