ID GQ395793; SV 1; linear; genomic DNA; STD; VRL; 2704 BP. XX AC GQ395793; XX DT 24-JUL-2011 (Rel. 109, Created) DT 24-JUL-2011 (Rel. 109, Last updated, Version 1) XX DE Pineapple bacilliform comosus virus isolate HI1 variant a polyprotein gene, DE partial cds. XX KW . XX OS Pineapple bacilliform CO virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-2704 RA Sether D.M., Melzer M.J., Borth W.B., Hu J.S.; RT "Characterization of a new pineapple badnavirus and other RT retro-transcribing elements from pineapple in Hawaii"; RL Unpublished. XX RN [2] RP 1-2704 RA Sether D.M., Melzer M.J., Borth W.B., Hu J.S.; RT ; RL Submitted (17-JUL-2009) to the INSDC. RL Plant and Environmental Protection Sciences, University of Hawaii, 3190 RL Maile Way, Honolulu, HI 96822, USA XX DR MD5; 3f0af8fc4c67edb2f420427c8e23e54e. XX FH Key Location/Qualifiers FH FT source 1..2704 FT /organism="Pineapple bacilliform CO virus" FT /host="Ananas comosus" FT /isolate="HI1 variant a" FT /mol_type="genomic DNA" FT /country="USA" FT /db_xref="taxon:2033633" FT CDS <1..2319 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G0T3E5" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G0T3E5" FT /protein_id="ADN96018.1" FT /translation="DCSELHPSRCQLNHIRKKSIEGRQVMALLDTGATVCIIQEAKVPD FT RLCEQTAVSYTLHGVNSTTSGRKVLKGGKLWLGEQFFRLPRTLVADMVLTEGVEMIVGC FT NFLRSLEGGLRIEGEVVTFYKLVTNVQSCRSTHAFGAIIEELEMAEDEYIDLNLMLATE FT PAVGEEFAKLPLYQQLKAEGFIGENPLLHWQRNQVICELQIKNPELTIEDRPLKHVTPA FT LKEVMQKHVDKLLELKAIRPSTSRHRTTAMIVYSGTEVDPVTKKEKRGKERLVFNYKRL FT NDNTEKDQYSLPGISTILQKIGHSKIYSKFDLKSGFHQVAMHPDSVPWTAFWAINGLYE FT WLVMPFGLKNAPAVFQRKMDHCFRGTEDFIAVYIDDILVFSETPEQHKKHLEVFLQIVR FT KNGLVLSPTKMKVGVQQVDFLGATIGNSRIRLQPHIIQKVVQFDNKDLQTTKGLRSFLG FT ILNYARSYIPQMGKLLGPLYSKVSPTGEKRMNKQDWAIIEKIKQMVEQLPELELPPNGS FT VIVIETDGCMEGWGGICKWKFPGAPRNQEKVCAYASGRFQPIKSTIDAEIQAVINSLDK FT FKIYYLNQKELVVRTDCQAIVSFYEKMANNKPSRVRWLTFSDFITGIGVPVKFEHIDGK FT DNLLADTLSRLVVMMLHEEAYTEPLQRVLPLLSTKEAVHVLTHKPILKCGCGKTAIRKM FT SRTSRNPNRHYYCCEKDKCHCWWWEDHLLQFAAEKGALEQEALRMEELFDRLQFNTNEP FT HGGPLEDDDQASLLDAVGL" FT mat_peptide 712..1260 FT /product="reverse transcriptase" FT mat_peptide 1561..1926 FT /product="ribonuclease H" FT misc_feature 2050..2160 FT /note="Region: zinc finger" XX SQ Sequence 2704 BP; 816 A; 595 C; 655 G; 638 T; 0 other; gactgcagtg agttacaccc ttcacggtgt caactcaacc acatcaggaa gaaaagtatt 60 gaagggaggc aagttatggc tttactggat acaggggcca cggtatgtat catccaagaa 120 gccaaggttc ctgatcgact gtgtgaacag actgcagtga gttacaccct tcacggtgtc 180 aactcaacca catcaggaag aaaagtattg aagggaggca agttatggct tggagaacaa 240 ttcttcaggc ttccaagaac actagtcgcc gacatggtgt tgacggaggg agttgagatg 300 atcgtgggat gtaacttcct acgaagtctt gaaggaggac tcaggattga aggtgaggta 360 gtaacttttt ataaattagt tactaatgtg caatcatgca gaagtacaca cgccttcgga 420 gccatcatag aggaactcga gatggctgag gacgagtaca ttgacctcaa cctcatgtta 480 gcaacagaac ctgccgtagg agaagaattt gccaaacttc ccctatacca gcaattgaag 540 gctgaaggat tcattggaga aaatcccctt ctccactggc aacgaaatca agtgatctgt 600 gaactacaga tcaaaaaccc tgagttaact atagaggacc ggcctctaaa acatgttacg 660 ccggccttga aggaagtaat gcagaagcac gtcgacaagc ttctggaatt gaaggcgatc 720 cggccttcaa cgagtagaca ccgaacaact gcaatgatag tctactccgg aacggaagtg 780 gatcccgtaa ccaagaaaga aaagagaggg aaagagcgct tggtgttcaa ctataagcgc 840 ctcaacgaca acactgagaa ggatcaatat tcactcccag gtatttctac gatccttcag 900 aaaattggcc actcaaaaat ctattcaaaa ttcgacctca agagcggatt tcatcaagtg 960 gctatgcacc ccgactccgt tccatggacc gcattctggg ccattaacgg cctttatgaa 1020 tggttggtga tgccttttgg gcttaaaaat gcaccagcgg tctttcaaag aaaaatggat 1080 cattgcttta gaggcacaga agactttatt gctgtctaca tagacgatat cttagtcttc 1140 tctgagaccc ctgagcagca caagaagcat ctggaggttt tcctccagat agtcaggaag 1200 aatgggcttg tgttaagccc aacaaaaatg aaagtgggag ttcaacaagt ggacttccta 1260 ggagctacaa ttggaaattc acgcatccgg ctccagcccc atattatcca gaaggtcgtt 1320 cagtttgaca acaaggacct tcaaacaaca aaaggactcc gaagcttcct cgggatatta 1380 aattacgcaa ggagttatat accacaaatg gggaaattgc ttggtcccct gtactcgaag 1440 gtttctccaa ctggagaaaa gaggatgaac aaacaggatt gggcgatcat tgaaaagatc 1500 aagcaaatgg tggagcaatt gcccgagtta gagcttcccc ccaacggttc ggtaatagtt 1560 atagagacgg acggatgtat ggaaggatgg ggaggtattt gcaaatggaa attcccaggc 1620 gccccaagga atcaagaaaa ggtgtgcgcc tatgcaagcg ggcgatttca gccaatcaaa 1680 agtactatcg atgcagagat ccaggcggtg atcaacagcc tggataaatt caaaatctat 1740 tatctgaatc aaaaggagct cgttgtgagg acggactgcc aggcaatcgt atccttctac 1800 gagaaaatgg ctaacaacaa gccatcacgg gtaagatggc taacgttctc tgactttatt 1860 acaggcatag gagtccctgt aaagttcgaa cacatcgacg gcaaggataa tctattagca 1920 gacacgctat caagattggt cgtgatgatg ctgcatgaag aggcgtatac ggaacctctt 1980 caacgagtcc ttccccttct gtcaacaaag gaggcagtac atgtgctcac ccacaagcct 2040 atactcaaat gtggttgcgg gaaaacagca atcagaaaaa tgtcccgcac ctcgaggaac 2100 ccaaatcggc actactactg ctgtgaaaag gataaatgcc attgctggtg gtgggaggat 2160 cacctgctac aatttgctgc tgaaaaagga gcgctagaac aagaagcgct aaggatggag 2220 gagctgttcg acaggctcca attcaacacc aacgaaccgc atggaggacc actcgaagac 2280 gatgaccaag cctccttact agacgcggtg ggcttatgaa gcgggcgtgg taggcccata 2340 atttattatt ttcttaaaga caatcggact tttggctctg gttttgggcc ttggccctgg 2400 tttgtaataa tattatttgg ccctttatca ctaccaggac agctgttcct ggaaaaactg 2460 tggcccatta cttttaaggc gcccctggtt ttgtgcgccc atggtttttg ctttctggtt 2520 tagcatcttg taaagaagcg gtattatgtg ctttgaggac aagcaaagtg acgatgaggc 2580 cccacgagta ctcggctttg cttaccatca acgcaagaaa aatacccttt ctgcctatat 2640 aaggacttag tttagctcat tgctaggcat cgaagcagaa cttcagttgc ttactttgag 2700 aaat 2704 //