ID   GQ386845; SV 1; linear; genomic RNA; STD; VRL; 1394 BP.
XX
AC   GQ386845;
XX
DT   09-SEP-2009 (Rel. 102, Created)
DT   30-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Sugarcane streak mosaic virus isolate TN1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1394
RX   PUBMED; 21365999.
RA   Reddy Ch.V., Sreenivasulu P., Sekhar G.;
RT   "Duplex-immunocapture-RT-PCR for detection and discrimination of two
RT   distinct potyviruses naturally infecting sugarcane (Saccharum spp.
RT   hybrid)";
RL   Indian J. Exp. Biol. 49(1):68-73(2011).
XX
RN   [2]
RP   1-1394
RA   Subba Reddy C.V., Sreenivasulu P., Sekhar G.;
RT   ;
RL   Submitted (18-JUN-2009) to the INSDC.
RL   Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL   Pradesh 517 502, India
XX
DR   MD5; 28dc63e25310682f6c6b355292b645e6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1394
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum sp. hybrid"
FT                   /isolate="TN1"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..1204
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C8CBU8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:C8CBU8"
FT                   /protein_id="ACV31200.1"
FT                   /translation="EYMSHKWLNACGMLIPKLSRERIMSILRWNRSFDLDSQANKINAA
FT                   WIESFGYADIMDFVHEYADWWSKHTGKEGFLMDIDKVTALYLTDEVRIDPVPTDLLVFH
FT                   SGQEALIYHAAVGDQGTQPPQDQSTVASTSSSTSATTTSQAESQTSGNLANTISQTMKS
FT                   LYVPPLVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTD
FT                   EILPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQIEFEMGPMYRN
FT                   AKPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNILS
FT                   PAEIDVRNQVINARTPRMGRPLFRHALRAGGDEDTDLRREDDANYGRTQIRGAHFGRAQ
FT                   H"
FT   misc_feature    <1..340
FT                   /product="NIb"
FT   misc_feature    341..1201
FT                   /product="coat protein"
FT   3'UTR           1205..1394
XX
SQ   Sequence 1394 BP; 413 A; 311 C; 344 G; 326 T; 0 other;
     tgagtacatg tcgcataagt ggctgaacgc ctgtgggatg ctaattccaa agttgtcacg        60
     agaacggatt atgagcattc tacgatggaa tcgatccttt gatcttgaca gtcaagcgaa       120
     caagataaat gcagcatgga tagaatcatt tgggtacgcc gacatcatgg acttcgtaca       180
     cgaatacgct gactggtgga gtaagcatac agggaaagag gggttcctca tggacatcga       240
     caaggtcaca gctctctatc tcacagatga agtaagaatt gaccctgtgc caacagactt       300
     gcttgtgttc cattcaggac aagaagcctt aatttatcac gctgctgttg gggatcaagg       360
     aacgcagcca cctcaggatc aaagtaccgt agcttcaact tcatcatcaa cttcagcgac       420
     aactacaagc caggctgaaa gtcaaacatc tggaaatttg gcaaacacga tctcccaaac       480
     gatgaaatca ctgtacgtgc caccattggt taaatccctc aagacggaag ccaaagcaaa       540
     gcagatgatg agatacacac ctccacaagc attaatctcc tcatcagccg catcaatacg       600
     acagtttaat gattgggcca acacagcggc tgagggatat ggaaagacaa tccagcaatt       660
     cacggatgag atcttacctt tttggattta ctggtgtgtt gtcaatgggg caactgaaga       720
     gaacaaaacg aaaccaaagt ggacgaaagc ggtgcttaac ttagacggag cagatgggac       780
     ggaaataacc gttgatgaaa atgggcctca gatagagttt gagatggggc caatgtacag       840
     aaacgctaaa cctggtattc gcgctatcat gagacatttt ggcgaattag cgtataagtg       900
     ggttcagttc tcggttcgta gcgggaaacc cataatacca cacaatgcag taaaggcagg       960
     attgaccaca ccagagtttt atccttgctg cattgatttt gtgatggtga acatcctttc      1020
     accagcagaa attgacgtgc gtaaccaggt gatcaacgca cgcacacccc ggatgggaag      1080
     gcctttattc cgtcacgcgc ttagagccgg gggagatgag gacacggacc tgcgtagaga      1140
     agatgatgct aattatggaa gaacgcagat ccgaggcgcc cattttgggc gtgctcagca      1200
     ctgattacca gtgcagttat ccatatatta ttgtatctac gtataaaatg gttctcttgg      1260
     ataggctgat ggtagttgcc tgaccgctta gtcgatcatc aggagctaca tgtggatcat      1320
     tcggagattg ctcaccctgt tttcagacca gtgagattct gccgaaccca caatcaacct      1380
     gccccgtgag gagg                                                        1394
//