ID   GQ386844; SV 1; linear; genomic RNA; STD; VRL; 1378 BP.
XX
AC   GQ386844;
XX
DT   09-SEP-2009 (Rel. 102, Created)
DT   30-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Sugarcane streak mosaic virus isolate KA1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1378
RX   PUBMED; 21365999.
RA   Reddy Ch.V., Sreenivasulu P., Sekhar G.;
RT   "Duplex-immunocapture-RT-PCR for detection and discrimination of two
RT   distinct potyviruses naturally infecting sugarcane (Saccharum spp.
RT   hybrid)";
RL   Indian J. Exp. Biol. 49(1):68-73(2011).
XX
RN   [2]
RP   1-1378
RA   Subba Reddy C.V., Sreenivasulu P., Sekhar G.;
RT   ;
RL   Submitted (18-JUN-2009) to the INSDC.
RL   Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL   Pradesh 517 502, India
XX
DR   MD5; 6821c02cb509e9e3603b24657de68726.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1378
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum sp. hybrid"
FT                   /isolate="KA1"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..1189
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C8CBU7"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:C8CBU7"
FT                   /protein_id="ACV31199.1"
FT                   /translation="KWLNACGMLIPNLSRERIMSILRWNRSFDLESQANKINAAWIESF
FT                   GYADIMDFVHEYADWWSKHTGKEGFLMDIDKLTALYLTDEVRIDPVPTDLLVFHSGEEA
FT                   LIYHAAVGEQRTQPPQDQSTVASTSSSTSATTSSQAESQTSGNLSNTISQTMKSLYVPP
FT                   LVKSLKTEAKAKQMMRYTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQFTDEILPF
FT                   WIYWCVVNGATEENKTKPKWTKAVFNLDGADGTEITVDENGPQIEFEMGPMYRNAKPGI
FT                   RAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVNILSPAEID
FT                   VRNQVINARTPRMGRPLFRHALRAGGDEDTDLRREDDANYGRTQIGGAHFGRAQH"
FT   misc_feature    <1..325
FT                   /product="NIb"
FT   misc_feature    326..1186
FT                   /product="coat protein"
FT   3'UTR           1190..1378
XX
SQ   Sequence 1378 BP; 406 A; 312 C; 337 G; 323 T; 0 other;
     caagtggctg aacgcctgtg ggatgctaat tccaaacttg tcacgagaac ggattatgag        60
     cattctacga tggaatcgat cctttgatct tgagagtcaa gcgaacaaga taaatgcagc       120
     atggatagaa tcatttgggt acgccgacat catggacttc gtacacgaat acgctgactg       180
     gtggagtaag catacaggga aagaggggtt cctcatggac atcgacaagc tcacagctct       240
     ctatctcaca gatgaagtaa gaattgaccc tgtgccaaca gacttgcttg tgttccattc       300
     aggagaagaa gccttaattt atcacgctgc tgttggggaa caacgaacgc agccacctca       360
     ggatcaaagt actgtagctt caacttcatc atcaacttca gcgacaactt caagccaggc       420
     tgaaagtcaa acatctggaa atttgtcaaa cacgatctcc caaacgatga aatcactgta       480
     cgtgccacca ttggttaaat ccctcaagac ggaagccaaa gcaaagcaga tgatgagata       540
     cacacctcca caagcattaa tctcctcgtc agccgcatca atacgacagt ttaatgattg       600
     ggccaacaca gcggccgagg gatatggaaa gacaatccag caattcacgg atgagatctt       660
     acctttttgg atttactggt gtgttgtcaa tggggcaact gaagagaaca aaacgaaacc       720
     caagtggacg aaagctgtgt ttaacttaga cggagcagat gggacggaaa ttaccgttga       780
     tgaaaatggg cctcaaatag agtttgagat ggggccaatg tacagaaacg ctaaacctgg       840
     tattcgcgct atcatgagac attttggcga attagcgtat aagtgggttc agttctcggt       900
     tcgtagcggg aaacccataa taccacacaa tgcagtaaag gcaggattga ccacaccaga       960
     gttttatcct tgctgcattg attttgtgat ggtgaacatc ctctcaccag cagaaattga      1020
     cgtgcgtaac caggtgatca acgcacgcac accccggatg ggaaggcctt tattccgtca      1080
     cgcgcttaga gccgggggag atgaggacac ggacctgcgt agagaagatg atgctaatta      1140
     tggaagaacg cagatcggag gcgcccactt tgggcgtgct cagcactgat taccagtgca      1200
     gttatccata tattattgta tctacgtata aaatggttct cttggatagg ctgatggtag      1260
     ttgcctgacc gcttagtcga tcatcaggag ctactggtgg atcattcgga gattgctcac      1320
     cctgtttcag accagtgaga ttctgccgaa cccacaatca acctgccccg ttaggacg        1378
//