ID   GQ386843; SV 1; linear; genomic RNA; STD; VRL; 1402 BP.
XX
AC   GQ386843;
XX
DT   09-SEP-2009 (Rel. 102, Created)
DT   30-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Sugarcane streak mosaic virus isolate AP1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1402
RX   PUBMED; 21365999.
RA   Reddy Ch.V., Sreenivasulu P., Sekhar G.;
RT   "Duplex-immunocapture-RT-PCR for detection and discrimination of two
RT   distinct potyviruses naturally infecting sugarcane (Saccharum spp.
RT   hybrid)";
RL   Indian J. Exp. Biol. 49(1):68-73(2011).
XX
RN   [2]
RP   1-1402
RA   Subba Reddy C.V., Sreenivasulu P., Sekhar G.;
RT   ;
RL   Submitted (18-JUN-2009) to the INSDC.
RL   Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL   Pradesh 517 502, India
XX
DR   MD5; ed99b0396629b87dac375c76e9b74ff1.
DR   EuropePMC; PMC3223368; 21998156.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1402
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum sp. hybrid"
FT                   /isolate="AP1"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..1212
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C8CBU6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:C8CBU6"
FT                   /protein_id="ACV31198.1"
FT                   /translation="GQVEYMSHKWLNACGMLIPKLSRERIMSILRWNRSFDLDSQANKI
FT                   NAAWIESFGYADIMDLVHEYADWWSKHTGKEGFLMDIDKVTALYLTDEVRIDPVPTDLL
FT                   VFHSGQEALIYHAAVGDQGTEPPQDQSTVASTSSSTSATTTSQAESQTSGNFANTISQT
FT                   MKSLYVPPLVKSLKTEAKAKQMMRNTPPQALISSSAASIRQFNDWANTAAEGYGKTIQQ
FT                   FTDEILPFWIYWCVVNGATEENKTKPKWTKAVLNLDGADGTEITVDENGPQIEFEMGPM
FT                   YRNAKPGIRAIMRHFGELAYKWVQFSVRSGKPIIPHNAVKAGLTTPEFYPCCIDFVMVN
FT                   ILSPAEIDVRNQVINARTPRMGRPLFRHALSAGGDEDTDLRREDDANYGRTQIGGAHFG
FT                   RAQH"
FT   misc_feature    <1..348
FT                   /product="NIb"
FT   misc_feature    349..1209
FT                   /product="coat protein"
FT   3'UTR           1213..1402
XX
SQ   Sequence 1402 BP; 415 A; 309 C; 352 G; 326 T; 0 other;
     gggcaagttg agtacatgtc gcataagtgg ctgaacgcct gtgggatgct aataccaaag        60
     ttgtcacgag aacggattat gagcattcta cgatggaatc gatcctttga tcttgacagt       120
     caagcgaaca agataaatgc agcatggata gaatcatttg ggtacgccga catcatggac       180
     ttggtacacg aatacgctga ctggtggagt aagcatacag ggaaagaggg gttcctcatg       240
     gacatcgaca aggtcacagc tctctatctc acagatgaag taagaattga ccctgtgcca       300
     acagacttgc ttgtgttcca ttcaggacaa gaagccttaa tttatcacgc tgctgttggg       360
     gatcaaggaa cggagccacc tcaggatcaa agtaccgtag cttcaacttc atcatcaact       420
     tctgcgacaa ctacaagcca ggctgaaagt caaacatctg gaaatttcgc aaacacgatc       480
     tcccaaacga tgaaatcact gtacgtgcca ccattggtta aatccctcaa gacggaagcc       540
     aaggcaaagc agatgatgag aaacacacct ccacaagcat taatctcctc atcagccgca       600
     tcaatacgac agtttaatga ttgggccaac acagcggctg agggatatgg aaagacaatc       660
     cagcaattca cggatgagat cttacctttt tggatttact ggtgtgttgt caatggggca       720
     actgaagaga acaaaacgaa accaaagtgg acgaaagcgg tgcttaactt agacggagca       780
     gatgggacgg aaataaccgt tgatgaaaat gggcctcaga tagagtttga gatggggcca       840
     atgtacagaa acgctaaacc tggtattcgc gctatcatga gacattttgg cgaattagcg       900
     tataagtggg ttcagttctc ggttcgtagc gggaaaccca taataccaca caatgcagta       960
     aaggcaggat tgaccacacc agagttttat ccttgctgca ttgattttgt gatggtgaac      1020
     atcctttcac cagcagaaat tgacgtgcgt aaccaggtga tcaacgcacg cacaccccgg      1080
     atgggaaggc ctttattccg tcacgcgctt agtgccgggg gagatgagga cacggacctg      1140
     cgtagagaag atgatgctaa ttatggaaga acgcagatcg gaggcgccca ttttgggcgt      1200
     gctcagcact gattaccaga gcagttatcc atatattatt gtatctacgt ataaaatggt      1260
     tctcttggat aggctgatgg tagttgcctg accgcttagt cgatcatcag gagctacatg      1320
     tggatcattc ggagattgct caccctgttt tgagaccagt gagattctgc cgaacccaca      1380
     atcaacctgc cccgtgagga gg                                               1402
//