ID GQ379224; SV 1; linear; genomic RNA; STD; VRL; 4297 BP. XX AC GQ379224; AY758560-AY758561; XX DT 30-AUG-2009 (Rel. 102, Created) DT 30-AUG-2009 (Rel. 102, Last updated, Version 1) XX DE Cotton leafroll dwarf virus isolate CLRDV-PV1 RNA-dependent RNA polymerase DE and P1 protein genes, partial cds; and read-through protein, coat protein, DE and putative movement protein genes, complete cds. XX KW . XX OS Cotton leafroll dwarf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-4297 RX DOI; 10.1007/s00705-004-0475-8. RX PUBMED; 15789270. RA Correa R.L., Silva T.F., Simoes-Araujo J.L., Barroso P.A., Vidal M.S., RA Vaslin M.F.; RT "Molecular characterization of a virus from the family Luteoviridae RT associated with cotton blue disease"; RL Arch. Virol. 150(7):1357-1367(2005). XX RN [2] RP 1-4297 RA Castilho Y.G., Correa R.L., Silva T.F., Vaslin M.F.S.; RT "Sequence determination and analysis of RNA-dependent RNA polymerase (RdRp) RT and read-though protein (RTP) of the polerovirus Cotton leafroll dwarf RT virus (CLRDV)"; RL Unpublished. XX RN [3] RP 1-4297 RA Correa R.L., Silva T.F., Barroso P., Araujo J.S., Vidal M.S., Vaslin M.; RT ; RL Submitted (21-SEP-2004) to the INSDC. RL Departamento de Virologia, Instituto de Microbiologia, Universidade Federal RL do Rio de Janeiro - UFRJ, Avenida Pau Brasil s/n, Rio de Janeiro, RJ RL 21941-590, Brasil XX RN [4] RP 1-4297 RA Castilho Y.G., Correa R.L., Silva T.F., Vaslin M.F.S.; RT ; RL Submitted (13-JUL-2009) to the INSDC. RL Departamento de Virologia, Instituto de Microbiologia, Universidade Federal RL do Rio de Janeiro - UFRJ, Avenida Pau Brasil s/n, Rio de Janeiro, RJ RL 21941-590, Brasil XX DR MD5; 36d86b7a3addbb332b96324201ddb7bd. XX CC On or before Aug 29, 2009 this sequence version replaced CC gi:59805030, gi:59805033. XX FH Key Location/Qualifiers FH FT source 1..4297 FT /organism="Cotton leafroll dwarf virus" FT /host="Gossypium (cotton)" FT /isolate="CLRDV-PV1" FT /mol_type="genomic RNA" FT /country="Brazil:Mato Grosso" FT /note="Aphis gossypii originally collected between FT 2003-2004; infected plants maintained from 2004-2005" FT /db_xref="taxon:312295" FT CDS join(<1..158,158..1901) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="replicase; ORFs1-2; P1-P2 fusion" FT /db_xref="GOA:Q4KUQ4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q4KUQ4" FT /protein_id="AAX08106.2" FT /translation="WADYSEEEDFFVEASETLPLQQPVPSAPPLSPRFYPQVDASPVAA FT PMVPESASGKRTRRSRPPKQGKSICHPRRAAERWSIRNGSAGGRAGKQNFNQLDREGGS FT QTSGIQNAHSRDPSSTTQAAAAASEAIKDFQNYFHAFYNWQVPASAQEVPGFQACGTLP FT QFYYAKQKGKSPWGEQLCAEFPQLEEETRGFGWPQFGPQAELKSLQQQAARWLERAQSA FT QIPSKEQRERVIQKTVEAYASCRTNRPAATARDVLSWPDFLEDLKEAVHSLELDAGVGV FT PYVGYGLPTHRGWVEDSKLLPVLSRLVFDRLQKMSEASFESMTAEELVQAGLCDPIRLF FT VKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFGLSTD FT GQTQEFLNLLANQMSTTAEDVVARWREYLVPTDCSGFDWSVADWMLHDEMEVRNRLTVQ FT NNGLTRRLRACWLRCISNSVLCLSDGTLLAQRVAGVQKSGSYNTSSSNSRIRVMSAYHC FT GASWAMAMGDDALESVDTDLSVYKQLGFKVEVSGELEFCSHIFLSPTLAVPVNRAKMLY FT KLIHGYNPGSGNLEVISNYLNACFSVLNELRSDPDFVALLYSWLVTPVLPQKNDTED" FT CDS <1..615 FT /codon_start=1 FT /product="P1 protein" FT /note="contains protease and VPg; ORF1" FT /db_xref="UniProtKB/TrEMBL:C8CBA9" FT /protein_id="ACU82790.1" FT /translation="WADYSEEEDFFVEASETLPLQQPVPSAPPLSPRFYPQVDASPVAA FT PMVPESASGNELGGADRPNKASPSATPVEQQNGGPSVMDRLVAELVNKISTSSIEKEVA FT KQVASKMPIPETPPQQPKQQRRRRKQSKTSKTTSTPSTTGKYQPPHKRSQASKLVAPSP FT SSTTPNKRANRLGGSSSVQNSPNWRKKPEASGGLNSAPKRS" FT CDS 2089..4176 FT /codon_start=1 FT /transl_except=(pos:2692..2694,aa:OTHER) FT /product="read-through protein" FT /note="P5; ORFs3-5" FT /db_xref="GOA:C8CBB0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:C8CBB0" FT /protein_id="ACU82791.1" FT /translation="MNTVVGRRTINGRRRPRRRNRRRQNQPVVVVQAPRNTQRRRRRRR FT GGRNRTGGRIPGGPGASSETFVFSKDSLSGSSSGSITFGPSLSDCPAFSNGMLKAYHEY FT KISMVLLEFISEASSTSSGSISYEVDPHCKLSTLSSTINKFGITKNGRKQFAASFINGQ FT EWHDTSEDQFRILYKGNGSSSIAGSFRVTIRCQFHNPKXVDDGPPPPGPSPPPSPSPPP FT PVPSRFWGYEGNPQCKILTAENNRNIDSRPLNFVSMYKWEDEKWDKVNLQAGYSRNDRR FT CMETYFVIPASRGKFHVYLEADGEFVVKHIGGDCDGNWLGNIAYDVSQRGWNIGDYKGC FT RISNYQSNTVFVAGHPDAEMNGKHFDAARAVEVDWFASFELTCDDEDGAWRIYPPPIQK FT DSSYNYTVSYGDYTEKYCEWGAVSVSIDEDNSTGTKSRIKPHKGVMMWSYPEKENSEGE FT SESETDQGKDLKTPDATTLVDFESDDNSSSKSAESIPDNTDLNPWNAVVSSKSDRPFKQ FT EDDRVSTSSRLSGNLRRPGSGNPQLRSPLGREKAPEPSESDLDAARIKGLPPPREQLPG FT FKPTRSISTFNPEPDLVEAWRPGTGPGYSKEDVAAATILAHGSIADGRSMLDKRDQEVL FT RSRSSWGTGGFLKKMKTSSSDKAEKLAKLSTAERREYELIKNSSGKTQAALFLEQKVMD FT R" FT CDS 2089..2694 FT /codon_start=1 FT /product="coat protein" FT /note="CP; P3; ORF3" FT /db_xref="GOA:Q4KUQ6" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q4KUQ6" FT /protein_id="AAX08104.1" FT /translation="MNTVVGRRTINGRRRPRRRNRRRQNQPVVVVQAPRNTQRRRRRRR FT GGRNRTGGRIPGGPGASSETFVFSKDSLSGSSSGSITFGPSLSDCPAFSNGMLKAYHEY FT KISMVLLEFISEASSTSSGSISYEVDPHCKLSTLSSTINKFGITKNGRKQFAASFINGQ FT EWHDTSEDQFRILYKGNGSSSIAGSFRVTIRCQFHNPK" FT CDS 2120..2644 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q4KUQ5" FT /protein_id="AAX08105.1" FT /translation="MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAF FT LEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMECSRPTMNIRSQWSYWSSS FT PRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRTGGSNLRRLSSMDRNGMTPPRTSS FT ESYIKAMVPRR" XX SQ Sequence 4297 BP; 1150 A; 1077 C; 1080 G; 990 T; 0 other; tgggctgatt actccgagga ggaagacttc ttcgttgaag cctccgaaac ccttcctctc 60 caacaacccg tgccctcagc tccacctctt tccccgaggt tttatcctca ggtggatgca 120 tctcctgtgg ctgcgccgat ggttcctgag tcggcgtcgg gaaacgaact aggcggagcc 180 gaccgcccaa acaaggcaag tccatctgcc acccccgtcg agcagcagaa cggtggtcca 240 tccgtaatgg atcggctggt ggccgagctg gtaaacaaaa tttcaaccag ctcgatcgag 300 aaggaggtag ccaaacaagt ggcatccaaa atgcccattc cagagacccc tcctcaacaa 360 cccaagcagc agcggcggcg tcggaagcaa tcaaagactt ccaaaactac ttccacgcct 420 tctacaactg gcaagtacca gcctccgcac aagaggtccc aggcttccaa gcttgtggca 480 ccctccccca gttctactac gccaaacaaa agggcaaatc gccttggggg gagcagctct 540 gtgcagaatt cccccaactg gaggaagaaa ccagaggctt cgggtggcct caattcggcc 600 cccaagcgga gctgaagagc ttgcagcagc aagctgctag gtggctggaa cgcgcccagt 660 ccgcacaaat accctccaag gaacagaggg agcgtgtaat tcaaaagacc gtggaagcgt 720 acgcgtcgtg tcgtacgaat cggcccgcgg caaccgctag ggatgtcctt agctggccgg 780 attttcttga agatcttaaa gaggccgtgc actccctgga gctcgatgcc ggtgtaggtg 840 taccctacgt tggatatggt ctccctactc atcgtgggtg ggttgaagac tccaagcttt 900 tgccagtcct ttctcggctg gtctttgacc gattacagaa gatgtcagag gctagttttg 960 agtccatgac tgctgaagag cttgtccagg ctgggctctg tgacccgatc agattattcg 1020 tgaaagggga gccgcacaaa caagctaagc ttgatgaagg tcgctaccgc ctcatcatgt 1080 ctgtatccct agtggatcaa ttggtggccc gggttttgtt ccaagcgcaa aacaaacggg 1140 agattgctct ctggcgtgca atccccagta aacccggttt tggactgtct actgatggac 1200 agacccagga gttccttaat ctcctggcga accagatgag taccaccgcc gaagatgtag 1260 ttgctaggtg gcgggaatac ctggttccca ctgattgctc tggtttcgac tggagtgtag 1320 ccgactggat gcttcacgat gagatggagg tccggaaccg cctcacggta cagaacaacg 1380 gactgacgag gcgccttcga gcctgctggc tcaggtgcat atctaactca gttctgtgcc 1440 tttcagacgg aacgctgctg gcccaacgag tggctggagt gcaaaagagc ggtagttaca 1500 acaccagctc ctccaacagc agaatccgcg ttatgagtgc ttaccattgt ggagcctcat 1560 gggcgatggc catgggcgat gatgcccttg aatcagtgga cacggaccta tccgtgtata 1620 aacaattagg ttttaaagtc gaggtgtcag gagaactgga gttctgttct catatctttc 1680 tttcccctac cctcgccgtc ccggtgaata gagccaaaat gctctacaag ctcatacatg 1740 gctataaccc gggatcagga aatctggagg ttatctccaa ctacctgaac gcctgtttca 1800 gcgttttaaa cgagttgcgt tcagacccag atttcgtagc tctcctctac tcgtggctcg 1860 tcactccagt cttgccacaa aagaacgata cagaggattg agcaaacctg agctagctct 1920 taatcttgtt gcaatagaga gaagcttaaa gtcaagatca cagcctaaca ctggactaca 1980 aattcctatc aggattcaca gcaggttttc tggtagcagt accaatatca acgttaggct 2040 tatatttaat ctacctaaag gtttctgctc acgtgcgaca aatagttaat gaatacggtc 2100 gtgggtagaa gaacgattaa tggaagaaga cgaccacgta ggcgcaacag gcgtcggcaa 2160 aatcagccag tggttgtggt ccaagcccct cggaacacac aacgcagaag acgacgaaga 2220 cgaggaggtc gtaataggac aggaggacgc attcctggag gaccaggagc ttcaagcgag 2280 acatttgttt tctcaaaaga cagtctctcg ggaagttcct caggatcaat cacgttcggg 2340 ccgtctttat cagattgccc ggcattcagc aatggaatgc tcaaggccta ccatgaatat 2400 aagatctcaa tggtcttatt ggagttcatc tccgaggcct cttcaacatc ctccggttcc 2460 atctcttacg aagtggatcc acactgtaaa ttgtcaaccc tatcctccac gattaacaaa 2520 ttcggaatca ccaagaacgg gaggaagcaa tttgcggcgt ctttcatcaa tggacaggaa 2580 tggcatgaca cctccgagga ccagttcaga atcttatata aaggcaatgg ttcctcgtcg 2640 atagctggct cttttagggt cacaattcgg tgccaattcc acaatccaaa ataggtagat 2700 gatggtcccc ccccaccggg tccgtctccc cctccttctc cttccccccc tcctccagtt 2760 ccttctcggt tctggggtta tgagggaaat ccacaatgca agatactcac ggctgaaaac 2820 aacagaaata tcgatagtag gccgttgaat ttcgtatcaa tgtataagtg ggaagatgag 2880 aaatgggata aagtcaatct tcaggccggt tactctcgca atgatcgacg ttgtatggaa 2940 acatacttcg tgatcccagc ttcccgagga aaatttcatg tttatcttga agctgatggc 3000 gagttcgttg tcaaacacat tggcggcgac tgcgatggta actggctggg caatatcgct 3060 tatgacgttt cccagagagg ttggaatatt ggagactata aaggttgcag gattagcaac 3120 taccagtcaa acacggtttt tgtggctgga cacccggacg cggaaatgaa tggcaagcac 3180 tttgatgctg cacgcgcagt ggaagtggat tggtttgcct cttttgagct tacatgtgat 3240 gatgaagatg gagcttggcg aatctaccct ccccccatac aaaaagatag ctcgtataat 3300 tacactgtat cctacggcga ttatactgag aaatattgcg agtggggagc tgtctcggtc 3360 tctatagacg aagacaattc cacagggacc aaatcaagaa ttaaaccaca taagggggta 3420 atgatgtggt catacccgga gaaggaaaac tctgaaggcg aaagcgaatc tgaaaccgat 3480 caaggaaaag atcttaaaac cccagacgcc acaactttag tcgatttcga atctgatgac 3540 aattcctctt ccaaatcggc agaaagcatt ccggataaca cagacttgaa tccttggaat 3600 gcagttgtgt cttccaagtc agatagacca tttaaacaag aagacgatcg agtttctaca 3660 agctctcgtt tatcaggtaa tctgaggcgt cctggatctg gaaatcctca actgcgctct 3720 ccacttggaa gggagaaagc gccagaacca tcggaatctg accttgacgc tgcaaggatt 3780 aagggacttc ctcctccacg ggagcaactc ccgggtttta aaccaacacg atcaatttca 3840 acgtttaacc cggaaccaga tttagttgag gcttggaggc caggaacagg tcctggatat 3900 tccaaggagg atgttgctgc tgcaacaatt ctcgcgcatg gttctatagc tgatgggagg 3960 tcgatgctag acaaacgtga tcaggaagtt ctaagaagcc gttccagttg gggaactggc 4020 ggattcttaa agaaaatgaa gacatcttcc tctgacaaag ctgaaaagct cgcgaaactg 4080 tctaccgccg agaggcgtga atatgaacta ataaagaaca gctcggggaa aacccaagct 4140 gcattgtttc ttgagcaaaa ggtgatggat aggtaagtga ttaagcttat cctcgtggat 4200 caccccgtcg agcctgtgac gttaaacagg aacgaatccg gaaggatagg cagcgaacct 4260 ttaatcctaa ggccaggcta tagccctgag acaggga 4297 //